CircRNA Information

General Information
circRNA Basic Information
CircID chr3:185921104|185922126
Strand -
CircType exon
Host Gene ENSG00000136527.17;
Algorism find_circ;CIRI2;DCC;
Sequence GCTAAAGAACGTGCCAATGGAATGGAGCTTGATGGGCGTAGGATCAGAGTTGATTTCTCTATAACAAAAAGACCACATACGCCAACACCAGGAATTTACATGGGGAGACCTACCTATGGCAGCTCTCGCCGTCGGGATTACTATGACAGAGGATATGATCGGGGCTATGATGATCGGGACTACTATAGCAGATCATACAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:185921104|185922126 hsa-miR-183-5p 0 0 1
chr3:185921104|185922126 hsa-miR-183-3p 0 0 1
chr3:185921104|185922126 hsa-miR-186-5p 0 0 1
chr3:185921104|185922126 hsa-miR-186-3p 0 0 1
chr3:185921104|185922126 hsa-miR-206 0 0 1
chr3:185921104|185922126 hsa-miR-383-5p 0 0 1
chr3:185921104|185922126 hsa-miR-383-3p 0 0 1
chr3:185921104|185922126 hsa-miR-425-5p 0 0 1
chr3:185921104|185922126 hsa-miR-425-3p 0 0 1
chr3:185921104|185922126 hsa-miR-487a-5p 0 0 1
chr3:185921104|185922126 hsa-miR-487a-3p 0 0 1
chr3:185921104|185922126 hsa-miR-495-5p 0 0 1
chr3:185921104|185922126 hsa-miR-495-3p 0 0 1
chr3:185921104|185922126 hsa-miR-585-5p 0 0 1
chr3:185921104|185922126 hsa-miR-585-3p 0 0 1
chr3:185921104|185922126 hsa-miR-613 0 0 1
chr3:185921104|185922126 hsa-miR-939-5p 0 0 1
chr3:185921104|185922126 hsa-miR-939-3p 0 0 1
chr3:185921104|185922126 hsa-miR-1272 0 0 1
chr3:185921104|185922126 hsa-miR-1322 0 0 1
chr3:185921104|185922126 hsa-miR-769-5p 0 0 1
chr3:185921104|185922126 hsa-miR-885-3p 0 0 1
chr3:185921104|185922126 hsa-miR-485-3p 0 0 1
chr3:185921104|185922126 hsa-miR-1268 0 0 1
chr3:185921104|185922126 hsa-miR-1 0 0 1
chr3:185921104|185922126 hsa-miR-219-1-3p 0 0 1
chr3:185921104|185922126 hsa-miR-1185 0 0 1
chr3:185921104|185922126 hsa-miR-638 1 0 0
chr3:185921104|185922126 hsa-miR-663a 1 0 0
chr3:185921104|185922126 hsa-miR-1268a 1 0 0
chr3:185921104|185922126 hsa-miR-3945 1 1 0
chr3:185921104|185922126 hsa-miR-1268b 1 0 0
chr3:185921104|185922126 hsa-miR-4489 1 1 0
chr3:185921104|185922126 hsa-miR-4660 0 1 0
chr3:185921104|185922126 hsa-miR-4739 1 0 0
chr3:185921104|185922126 hsa-miR-6133 1 0 0
chr3:185921104|185922126 hsa-miR-12120 1 0 0
chr3:185921104|185922126 hsa-miR-4433b-3p 1 0 0
chr3:185921104|185922126 hsa-miR-6840-3p 0 1 0
chr3:185921104|185922126 hsa-miR-3150a-3p 0 1 0
chr3:185921104|185922126 hsa-miR-6728-5p 1 0 0
chr3:185921104|185922126 hsa-miR-6727-5p 0 1 0
chr3:185921104|185922126 hsa-miR-6716-5p 1 0 0
chr3:185921104|185922126 hsa-miR-6772-5p 1 1 0
chr3:185921104|185922126 hsa-miR-6847-5p 0 1 0
chr3:185921104|185922126 hsa-miR-4733-3p 0 1 0
chr3:185921104|185922126 hsa-miR-3065-3p 0 1 0
chr3:185921104|185922126 hsa-miR-744-5p 1 0 0
chr3:185921104|185922126 hsa-miR-302c-5p 1 1 0
chr3:185921104|185922126 hsa-miR-6768-3p 0 1 0
chr3:185921104|185922126 hsa-miR-6775-5p 1 0 0
chr3:185921104|185922126 hsa-miR-3620-5p 1 0 0
chr3:185921104|185922126 hsa-miR-4745-5p 1 0 0
chr3:185921104|185922126 hsa-miR-3199 0 1 0
chr3:185921104|185922126 hsa-miR-3679-5p 1 1 0
chr3:185921104|185922126 hsa-miR-10393-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:185921104|185922126
ORF Type ORF1
Protein Length 59
Nucleotide Length 177
Protein Sequence MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY
Nucleotide Sequence ATGGAGCTTGATGGGCGTAGGATCAGAGTTGATTTCTCTATAACAAAAAGACCACATACGCCAACACCAGGAATTTACATGGGGAGACCTACCTATGGCAGCTCTCGCCGTCGGGATTACTATGACAGAGGATATGATCGGGGCTATGATGATCGGGACTACTATAGCAGATCATAC
CircID chr3:185921104|185922126
ORF Type ORF1
Protein Length 28
Nucleotide Length 87
Protein Sequence MICYSSPDHHSPDHILCHSNPDGESCHR
Nucleotide Sequence ATGATCTGCTATAGTAGTCCCGATCATCATAGCCCCGATCATATCCTCTGTCATAGTAATCCCGACGGCGAGAGCTGCCATAGGTAG
CircID chr3:185921104|185922126
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MWSFCYREINSDPTPIKLHSIGTFFS
Nucleotide Sequence ATGTGGTCTTTTTGTTATAGAGAAATCAACTCTGATCCTACGCCCATCAAGCTCCATTCCATTGGCACGTTCTTTAGC
CircID chr3:185921104|185922126
ORF Type ORF3
Protein Length 59
Nucleotide Length 177
Protein Sequence MELDGRRIRVDFSITKRPHTPTPGIYMGRPTYGSSRRRDYYDRGYDRGYDDRDYYSRSY
Nucleotide Sequence ATGGAGCTTGATGGGCGTAGGATCAGAGTTGATTTCTCTATAACAAAAAGACCACATACGCCAACACCAGGAATTTACATGGGGAGACCTACCTATGGCAGCTCTCGCCGTCGGGATTACTATGACAGAGGATATGATCGGGGCTATGATGATCGGGACTACTATAGCAGATCATAC
CircID chr3:185921104|185922126
ORF Type ORF4
Protein Length 28
Nucleotide Length 84
Protein Sequence MAALAVGITMTEDMIGAMMIGTTIADHT
Nucleotide Sequence ATGGCAGCTCTCGCCGTCGGGATTACTATGACAGAGGATATGATCGGGGCTATGATGATCGGGACTACTATAGCAGATCATACA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:185921104|185922126 KHSRP 0 2 0
chr3:185921104|185922126 MOV10 0 1 0
chr3:185921104|185922126 PRPF8 0 6 3
chr3:185921104|185922126 SRSF10 1 1 0
chr3:185921104|185922126 TNRC6A 3 0 1
chr3:185921104|185922126 CAPRIN1 0 0 2
chr3:185921104|185922126 NUDT21 0 3 0
chr3:185921104|185922126 RBM15B 0 6 0
chr3:185921104|185922126 TROVE2 0 0 1
chr3:185921104|185922126 GNL3 1 0 1
chr3:185921104|185922126 DGCR8 2 0 5
chr3:185921104|185922126 PTBP1 23 0 2
chr3:185921104|185922126 DDX3X 2 0 1
chr3:185921104|185922126 ACIN1 1 0 4
chr3:185921104|185922126 RANGAP1 1 2 2
chr3:185921104|185922126 FXR1 0 1 2
chr3:185921104|185922126 FXR2 0 1 4
chr3:185921104|185922126 DICER1 0 1 1
chr3:185921104|185922126 RBM47 0 1 1
chr3:185921104|185922126 SLTM 1 0 2
chr3:185921104|185922126 EIF4G2 0 1 1
chr3:185921104|185922126 EIF4G1 0 0 1
chr3:185921104|185922126 DDX42 0 1 1
chr3:185921104|185922126 CSTF2T 0 1 2
chr3:185921104|185922126 YWHAG 0 0 2
chr3:185921104|185922126 RNF219 1 0 0
chr3:185921104|185922126 XRN2 1 2 4
chr3:185921104|185922126 SLBP 0 0 1
chr3:185921104|185922126 ELAVL1 0 0 2
chr3:185921104|185922126 KHDRBS1 0 1 0
chr3:185921104|185922126 CELF2 0 1 0
chr3:185921104|185922126 RC3H1 0 0 1
chr3:185921104|185922126 YTHDF1 1 1 0
chr3:185921104|185922126 SRSF7 0 1 1
chr3:185921104|185922126 SRSF1 3 4 9
chr3:185921104|185922126 SRSF3 1 0 0
chr3:185921104|185922126 NONO 1 0 0
chr3:185921104|185922126 ADAR 0 1 0
chr3:185921104|185922126 U2AF2 11 8 7
chr3:185921104|185922126 SRSF9 0 0 4
chr3:185921104|185922126 DDX54 0 0 6
chr3:185921104|185922126 SF3A3 2 0 1
chr3:185921104|185922126 ZNF184 2 0 5
chr3:185921104|185922126 LIN28B 5 5 9
chr3:185921104|185922126 LIN28A 0 0 1
chr3:185921104|185922126 RBFOX2 1 9 2
chr3:185921104|185922126 RBM27 1 0 2
chr3:185921104|185922126 RBM22 0 1 0
chr3:185921104|185922126 HNRNPK 1 0 0
chr3:185921104|185922126 AIFM1 0 0 1
chr3:185921104|185922126 AGO1 0 0 2
chr3:185921104|185922126 EIF4A3 5 5 4
chr3:185921104|185922126 FAM120A 1 0 2
chr3:185921104|185922126 CNBP 0 0 1
chr3:185921104|185922126 TAF15 2 0 1
chr3:185921104|185922126 RBM10 4 0 0
chr3:185921104|185922126 HNRNPC 25 23 0
chr3:185921104|185922126 SMNDC1 3 3 5
chr3:185921104|185922126 AUH 1 1 0
chr3:185921104|185922126 HNRNPA1 11 7 0
chr3:185921104|185922126 SND1 0 0 5
chr3:185921104|185922126 IGF2BP1 0 1 4
chr3:185921104|185922126 IGF2BP3 1 1 5
chr3:185921104|185922126 IGF2BP2 3 4 11
chr3:185921104|185922126 HNRNPUL1 0 1 0
chr3:185921104|185922126 TARDBP 1 0 3
chr3:185921104|185922126 YTHDC1 8 7 0
chr3:185921104|185922126 BUD13 2 1 4
chr3:185921104|185922126 RTCB 0 0 1
chr3:185921104|185922126 FBL 0 0 4
chr3:185921104|185922126 NUMA1 0 1 1
chr3:185921104|185922126 SF3B4 2 1 0
chr3:185921104|185922126 CPSF7 3 0 0
chr3:185921104|185922126 FMR1 1 1 16
chr3:185921104|185922126 CPSF6 2 0 2
chr3:185921104|185922126 CPSF4 1 0 0
chr3:185921104|185922126 CPSF3 0 1 0
chr3:185921104|185922126 NOP58 4 5 4
chr3:185921104|185922126 NOP56 0 3 1
chr3:185921104|185922126 LSM11 1 1 3
chr3:185921104|185922126 HNRNPA2B1 2 2 1
chr3:185921104|185922126 FIP1L1 1 0 0
chr3:185921104|185922126 TRA2A 1 0 4
chr3:185921104|185922126 ZC3H7B 0 1 2
chr3:185921104|185922126 MSI2 3 1 2
chr3:185921104|185922126 NPM1 0 0 2
chr3:185921104|185922126 ATXN2 0 1 0
chr3:185921104|185922126 U2AF1 3 0 7
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab