CircRNA Information

General Information
circRNA Basic Information
CircID chr3:187077530|187077806
Strand +
CircType exon
Host Gene ENSG00000073849.13;
Algorism CIRI2;
Sequence CTCTTCCACACTAGCCTCCGTCACAGCAGGGTGCATGCAGCCGAGGTGTGAGCACAGAGCAGGTCCCTACTAAAGGCAGGAAGGAAACCAGCATGAACTGAGCACCTACTACGTGCCAGGTACAGAGCCAGGACAGGTGCTTTCCTGTAATCCTCACAAAAGCAGTGAGATAGGATCATCATCCCCACTTTACAGGTGTGGAAACAGGCTCAAGGAAGAGCATTTGCCCAGAGTGGCACAGCTAGTCAGTAGGGGAGCATCAATTTGAAAATCCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:187077530|187077806 hsa-miR-17-5p 0 0 1
chr3:187077530|187077806 hsa-miR-17-3p 0 0 1
chr3:187077530|187077806 hsa-miR-20a-5p 0 0 1
chr3:187077530|187077806 hsa-miR-20a-3p 0 0 1
chr3:187077530|187077806 hsa-miR-93-5p 0 0 1
chr3:187077530|187077806 hsa-miR-93-3p 0 0 1
chr3:187077530|187077806 hsa-miR-106a-5p 0 0 1
chr3:187077530|187077806 hsa-miR-106a-3p 0 0 1
chr3:187077530|187077806 hsa-miR-149-5p 0 0 1
chr3:187077530|187077806 hsa-miR-149-3p 0 0 1
chr3:187077530|187077806 hsa-miR-106b-5p 0 0 1
chr3:187077530|187077806 hsa-miR-106b-3p 0 0 1
chr3:187077530|187077806 hsa-miR-370-5p 0 0 1
chr3:187077530|187077806 hsa-miR-370-3p 0 0 1
chr3:187077530|187077806 hsa-miR-326 0 1 1
chr3:187077530|187077806 hsa-miR-20b-5p 0 0 1
chr3:187077530|187077806 hsa-miR-20b-3p 0 0 1
chr3:187077530|187077806 hsa-miR-492 0 0 1
chr3:187077530|187077806 hsa-miR-519d-5p 0 0 1
chr3:187077530|187077806 hsa-miR-519d-3p 0 0 1
chr3:187077530|187077806 hsa-miR-564 0 0 1
chr3:187077530|187077806 hsa-miR-607 0 0 1
chr3:187077530|187077806 hsa-miR-612 0 1 1
chr3:187077530|187077806 hsa-miR-619-5p 0 0 1
chr3:187077530|187077806 hsa-miR-619-3p 0 0 1
chr3:187077530|187077806 hsa-miR-648 0 0 1
chr3:187077530|187077806 hsa-miR-758-5p 0 0 1
chr3:187077530|187077806 hsa-miR-758-3p 0 0 1
chr3:187077530|187077806 hsa-miR-760 0 1 1
chr3:187077530|187077806 hsa-miR-1178-5p 0 0 1
chr3:187077530|187077806 hsa-miR-1178-3p 0 0 1
chr3:187077530|187077806 hsa-miR-1227-5p 0 0 1
chr3:187077530|187077806 hsa-miR-1227-3p 0 0 1
chr3:187077530|187077806 hsa-miR-1228-5p 0 0 1
chr3:187077530|187077806 hsa-miR-1228-3p 0 0 1
chr3:187077530|187077806 hsa-miR-1236-5p 0 0 1
chr3:187077530|187077806 hsa-miR-1236-3p 0 0 1
chr3:187077530|187077806 hsa-miR-1206 0 0 1
chr3:187077530|187077806 hsa-miR-1290 0 0 1
chr3:187077530|187077806 hsa-miR-1294 0 0 1
chr3:187077530|187077806 hsa-miR-1305 0 0 1
chr3:187077530|187077806 hsa-miR-1272 0 0 1
chr3:187077530|187077806 hsa-miR-491-5p 0 0 1
chr3:187077530|187077806 hsa-miR-502-5p 0 0 1
chr3:187077530|187077806 hsa-miR-330-5p 0 1 1
chr3:187077530|187077806 hsa-miR-502-3p 0 0 1
chr3:187077530|187077806 hsa-miR-501-3p 0 0 1
chr3:187077530|187077806 hsa-miR-876-5p 0 0 1
chr3:187077530|187077806 hsa-miR-342-3p 0 0 1
chr3:187077530|187077806 hsa-miR-105 0 0 1
chr3:187077530|187077806 hsa-miR-7 0 0 1
chr3:187077530|187077806 hsa-miR-138 0 0 1
chr3:187077530|187077806 hsa-miR-1285 0 0 1
chr3:187077530|187077806 hsa-miR-220a 0 0 1
chr3:187077530|187077806 hsa-miR-1185 0 0 1
chr3:187077530|187077806 hsa-miR-325 0 1 0
chr3:187077530|187077806 hsa-miR-892b 1 1 0
chr3:187077530|187077806 hsa-miR-1248 1 0 0
chr3:187077530|187077806 hsa-miR-3907 1 1 0
chr3:187077530|187077806 hsa-miR-4489 0 1 0
chr3:187077530|187077806 hsa-miR-4780 0 1 0
chr3:187077530|187077806 hsa-miR-5691 0 1 0
chr3:187077530|187077806 hsa-miR-6860 0 1 0
chr3:187077530|187077806 hsa-miR-7974 1 0 0
chr3:187077530|187077806 hsa-miR-8057 0 1 0
chr3:187077530|187077806 hsa-miR-29b-1-5p 0 1 0
chr3:187077530|187077806 hsa-miR-105-5p 0 1 0
chr3:187077530|187077806 hsa-miR-92a-1-5p 1 0 0
chr3:187077530|187077806 hsa-miR-3194-3p 1 0 0
chr3:187077530|187077806 hsa-miR-6875-3p 1 1 0
chr3:187077530|187077806 hsa-miR-6741-5p 1 0 0
chr3:187077530|187077806 hsa-miR-4728-3p 1 0 0
chr3:187077530|187077806 hsa-miR-6772-3p 1 0 0
chr3:187077530|187077806 hsa-miR-7113-3p 1 0 0
chr3:187077530|187077806 hsa-miR-4638-5p 0 1 0
chr3:187077530|187077806 hsa-miR-4774-5p 0 1 0
chr3:187077530|187077806 hsa-miR-1296-5p 1 0 0
chr3:187077530|187077806 hsa-miR-1296-3p 0 1 0
chr3:187077530|187077806 hsa-miR-6748-3p 0 1 0
chr3:187077530|187077806 hsa-miR-6751-5p 0 1 0
chr3:187077530|187077806 hsa-miR-4685-3p 0 1 0
chr3:187077530|187077806 hsa-miR-1909-3p 1 0 0
chr3:187077530|187077806 hsa-miR-6846-5p 0 1 0
chr3:187077530|187077806 hsa-miR-1271-3p 1 0 0
chr3:187077530|187077806 hsa-miR-5008-3p 0 1 0
chr3:187077530|187077806 hsa-miR-4722-3p 1 0 0
chr3:187077530|187077806 hsa-miR-6805-3p 0 1 0
chr3:187077530|187077806 hsa-miR-6737-3p 0 1 0
chr3:187077530|187077806 hsa-miR-6835-3p 0 1 0
chr3:187077530|187077806 hsa-miR-7157-3p 0 1 0
chr3:187077530|187077806 hsa-miR-498-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:187077530|187077806
ORF Type ORF1
Protein Length 56
Nucleotide Length 171
Protein Sequence MSTYYVPGTEPGQVLSCNPHKSSEIGSSSPLYRCGNRLKEEHLPRVAQLVSRGASI
Nucleotide Sequence CTGAGCACCTACTACGTGCCAGGTACAGAGCCAGGACAGGTGCTTTCCTGTAATCCTCACAAAAGCAGTGAGATAGGATCATCATCCCCACTTTACAGGTGTGGAAACAGGCTCAAGGAAGAGCATTTGCCCAGAGTGGCACAGCTAGTCAGTAGGGGAGCATCAATTTGA
CircID chr3:187077530|187077806
ORF Type ORF2
Protein Length 41
Nucleotide Length 126
Protein Sequence MSWLCTWHVVGAQFMLVSFLPLVGTCSVLTPRLHAPCCDGG
Nucleotide Sequence CTGTCCTGGCTCTGTACCTGGCACGTAGTAGGTGCTCAGTTCATGCTGGTTTCCTTCCTGCCTTTAGTAGGGACCTGCTCTGTGCTCACACCTCGGCTGCATGCACCCTGCTGTGACGGAGGCTAG
CircID chr3:187077530|187077806
ORF Type ORF3
Protein Length 28
Nucleotide Length 87
Protein Sequence LDFQIDAPLLTSCATLGKCSSLSLFPHL
Nucleotide Sequence CTGGATTTTCAAATTGATGCTCCCCTACTGACTAGCTGTGCCACTCTGGGCAAATGCTCTTCCTTGAGCCTGTTTCCACACCTGTAA
CircID chr3:187077530|187077806
ORF Type ORF4
Protein Length 53
Nucleotide Length 162
Protein Sequence MMILSHCFCEDYRKAPVLALYLARSRCSVHAGFLPAFSRDLLCAHTSAACTLL
Nucleotide Sequence ATGATGATCCTATCTCACTGCTTTTGTGAGGATTACAGGAAAGCACCTGTCCTGGCTCTGTACCTGGCACGTAGTAGGTGCTCAGTTCATGCTGGTTTCCTTCCTGCCTTTAGTAGGGACCTGCTCTGTGCTCACACCTCGGCTGCATGCACCCTGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab