CircRNA Information

General Information
circRNA Basic Information
CircID chr3:189127057|189207594
Strand +
CircType exon
Host Gene ENSG00000188001.9;
Algorism find_circ;CIRI2;CIRC
Sequence GATTATTTATGAGGATGGCCTGTGCAAAAAGACACCCAGAGATTTCATGCTGTTGATTCACAGAAAGCCTGTTCCTCTTCACTCCGTAGAGTCCTCAGAGTCTGGATCATCCCTTACAGAAGATCCTTGATAATATTTCTGATATACCTCCAAGGTTCCGTTTGTCAAATGTGTGCGACCCTTCTGATAAGTCACCAGAGGTGATGAGGGAGAGAGAGAAAGAAAGCAAATTACAACTGTAAAGAGTCTCTGAACAGTGAAAGATCAAAACAGACAGTCTCTGGCTTTACTGGATGAGTCACCATTGCAGCCCGACCGCAAAAACAAGCGTGGCTTCTGTACTTAGCAGCAGTCTTCCTGTCTGGAAAGGAAACATTGCTCAGATTGGAGATACTGGCCATTTTATAGACTTCAAAGCAACTTAGGCCACTGAACTGTCAGGCGGGAAAACAGGATGTCTTCCATTTGGAAGCCCCTTTGCTTCTAAGAAGTTCCAGAGACCATCCCAGGCCCACAGAGAGTTATAAGGATTCATCTGGGCACTGAAGACATTTGGGACCTCAGTGAAGTTTCTCCGAGGCCAGATGGTCACATTGATTTTCTGGAATCATTTTGAATAAAAATGAGCGAGGTGGTGAACACAATGCAAGGCTCTCCACGTACTGTCTGGTATTGTTCAACCAGCTCCACGACTCCCTGAGGGCAGAGATGAGCAGATGTTAATGGATAAAGCCAGGTGGGATGATGTTATAACATTTCTCCTACAGCCCCAAATCTCCCAACTCCTGCATGTGTGACCTGAGTAAGACTCGGTGCAAGAAGACATCAGTGTTCCCATCTGTGAAATGAAGGAATTGACCCCCGAGGATCTTCCATTTCTGACAGTGCTTTGGATTTCATTGGTTTTGTCACAGGTACCCCCCAAAAGCCTCCATCTTTGGATAAGTGATTAAAACTGCTGAGTAATTTTCAATTAATAAAAGTTCAGTGCTGGCTCTCACTTGGTGAAGTGAGATTCAGACTGAGTGGGGTCACAGCACAGGGCACTGTCTTGCCTGGCTTTATCTGAGCCAATCACACCTCTCCTGGCCACTATCTGTGGTCTAGCCCCCTTTGTGCAGAAAGAGAAAGAAGAGCCTTGAGGACCAGCCTAGTCAGAGGCTGAAGAAATGTCAACAATTGGGAGTTTTGAAGGATTCCAGGCTGTGTCTCTGAAGCAAGAGGGAGATGACCAACCCTCTGAGACTGACCACCTATCGATGGAGGAAGAGGACCCGATGCCAAGACAGATTTCAAGGCAGTCAAGTGTGACCGAATCAACTCTTTACCCCAATCCTTATCATCAGCCTTATATCTCACGGAAGTACTTTGCTACACGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:189127057|189207594 hsa-miR-661 1 1 1
chr3:189127057|189207594 hsa-miR-760 1 1 1
chr3:189127057|189207594 hsa-miR-2861 1 1 1
chr3:189127057|189207594 hsa-miR-4260 1 1 1
chr3:189127057|189207594 hsa-miR-4469 1 1 1
chr3:189127057|189207594 hsa-miR-4656 1 1 1
chr3:189127057|189207594 hsa-miR-4739 1 1 1
chr3:189127057|189207594 hsa-miR-5192 1 1 1
chr3:189127057|189207594 hsa-miR-5572 1 1 1
chr3:189127057|189207594 hsa-miR-197-3p 1 1 1
chr3:189127057|189207594 hsa-miR-4433b-3p 1 1 1
chr3:189127057|189207594 hsa-miR-92a-1-5p 1 1 1
chr3:189127057|189207594 hsa-miR-7-5p 1 1 1
chr3:189127057|189207594 hsa-miR-31-5p 1 1 1
chr3:189127057|189207594 hsa-miR-504-3p 1 1 1
chr3:189127057|189207594 hsa-miR-4433a-3p 1 1 1
chr3:189127057|189207594 hsa-miR-205-5p 1 1 1
chr3:189127057|189207594 hsa-miR-6822-3p 1 1 1
chr3:189127057|189207594 hsa-miR-4687-3p 1 1 1
chr3:189127057|189207594 hsa-miR-129-5p 1 1 1
chr3:189127057|189207594 hsa-miR-6728-5p 1 1 1
chr3:189127057|189207594 hsa-miR-1236-5p 1 1 1
chr3:189127057|189207594 hsa-miR-4709-3p 1 1 1
chr3:189127057|189207594 hsa-miR-4722-5p 1 1 1
chr3:189127057|189207594 hsa-miR-4459 1 1 1
chr3:189127057|189207594 hsa-miR-24-3p 1 1 1
chr3:189127057|189207594 hsa-miR-3928-3p 1 1 1
chr3:189127057|189207594 hsa-miR-185-3p 1 1 1
chr3:189127057|189207594 hsa-miR-6829-5p 1 1 1
chr3:189127057|189207594 hsa-miR-1224-5p 1 1 1
chr3:189127057|189207594 hsa-miR-6881-5p 1 1 1
chr3:189127057|189207594 hsa-miR-3934-3p 1 1 1
chr3:189127057|189207594 hsa-miR-615-5p 1 1 1
chr3:189127057|189207594 hsa-miR-3944-3p 1 1 1
chr3:189127057|189207594 hsa-miR-185-5p 1 1 1
chr3:189127057|189207594 hsa-miR-4786-3p 1 1 1
chr3:189127057|189207594 hsa-miR-4717-3p 1 1 1
chr3:189127057|189207594 hsa-miR-6847-5p 1 1 1
chr3:189127057|189207594 hsa-miR-6830-3p 1 1 1
chr3:189127057|189207594 hsa-miR-6830-5p 1 1 1
chr3:189127057|189207594 hsa-miR-202-3p 1 1 1
chr3:189127057|189207594 hsa-miR-3160-5p 1 1 1
chr3:189127057|189207594 hsa-miR-188-3p 1 1 1
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:189127057|189207594 ELAVL1 0 0 3
chr3:189127057|189207594 FUS 0 1 0
chr3:189127057|189207594 LIN28B 0 0 1
chr3:189127057|189207594 IGF2BP1 0 0 1
chr3:189127057|189207594 IGF2BP3 0 0 1
chr3:189127057|189207594 TARDBP 0 1 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab