CircRNA Information

General Information
circRNA Basic Information
CircID chr3:190306489|190306716
Strand -
CircType exon
Host Gene ENSG00000163347.5;
Algorism CIRI2;
Sequence CACACTTACATGTATTCTATCTCACTGGATCCCCACAACATCACTGTGAGGTGGGAAGATCAGGAATTACAAACCACCGCTTACAGATGAAGCAATAAGCTTACAGCAGCCAAATGCCTTGCTCAAACACAGACGGTGATTGATAGCACCAAGACTCAAATCCAGGTCTCCAGACACCAATGCCAACACCCTTTCCATTACATCATCTTGCTCAAGTGAAATAGCATT
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:190306489|190306716 hsa-miR-21-5p 0 0 1
chr3:190306489|190306716 hsa-miR-21-3p 0 0 1
chr3:190306489|190306716 hsa-miR-27a-5p 0 0 1
chr3:190306489|190306716 hsa-miR-27a-3p 0 0 1
chr3:190306489|190306716 hsa-miR-27b-5p 0 0 1
chr3:190306489|190306716 hsa-miR-27b-3p 0 0 1
chr3:190306489|190306716 hsa-miR-137-5p 0 0 1
chr3:190306489|190306716 hsa-miR-137-3p 0 0 1
chr3:190306489|190306716 hsa-miR-380-5p 0 0 1
chr3:190306489|190306716 hsa-miR-380-3p 0 0 1
chr3:190306489|190306716 hsa-miR-595 0 0 1
chr3:190306489|190306716 hsa-miR-604 0 0 1
chr3:190306489|190306716 hsa-miR-609 0 0 1
chr3:190306489|190306716 hsa-miR-619-5p 0 0 1
chr3:190306489|190306716 hsa-miR-619-3p 0 0 1
chr3:190306489|190306716 hsa-miR-627-5p 0 0 1
chr3:190306489|190306716 hsa-miR-627-3p 0 0 1
chr3:190306489|190306716 hsa-miR-631 0 0 1
chr3:190306489|190306716 hsa-miR-647 0 0 1
chr3:190306489|190306716 hsa-miR-924 0 0 1
chr3:190306489|190306716 hsa-miR-1231 0 0 1
chr3:190306489|190306716 hsa-miR-1200 0 0 1
chr3:190306489|190306716 hsa-miR-1290 0 0 1
chr3:190306489|190306716 hsa-miR-1256 0 0 1
chr3:190306489|190306716 hsa-miR-1825 0 0 1
chr3:190306489|190306716 hsa-miR-769-5p 0 1 1
chr3:190306489|190306716 hsa-miR-491-5p 1 0 1
chr3:190306489|190306716 hsa-miR-199a-5p 0 0 1
chr3:190306489|190306716 hsa-miR-1224-3p 0 0 1
chr3:190306489|190306716 hsa-miR-188-3p 0 0 1
chr3:190306489|190306716 hsa-miR-876-3p 0 1 1
chr3:190306489|190306716 hsa-miR-199b-5p 0 0 1
chr3:190306489|190306716 hsa-miR-876-5p 0 0 1
chr3:190306489|190306716 hsa-miR-590-5p 0 0 1
chr3:190306489|190306716 hsa-miR-1260 0 0 1
chr3:190306489|190306716 hsa-miR-1280 0 0 1
chr3:190306489|190306716 hsa-miR-128 0 0 1
chr3:190306489|190306716 hsa-miR-516b 0 0 1
chr3:190306489|190306716 hsa-miR-638 1 0 0
chr3:190306489|190306716 hsa-miR-1182 1 0 0
chr3:190306489|190306716 hsa-miR-1183 1 0 0
chr3:190306489|190306716 hsa-miR-1260a 0 1 0
chr3:190306489|190306716 hsa-miR-1270 1 0 0
chr3:190306489|190306716 hsa-miR-3147 1 0 0
chr3:190306489|190306716 hsa-miR-3154 1 0 0
chr3:190306489|190306716 hsa-miR-4321 1 0 0
chr3:190306489|190306716 hsa-miR-3911 1 0 0
chr3:190306489|190306716 hsa-miR-3936 1 1 0
chr3:190306489|190306716 hsa-miR-4443 1 0 0
chr3:190306489|190306716 hsa-miR-4450 1 0 0
chr3:190306489|190306716 hsa-miR-3135b 1 0 0
chr3:190306489|190306716 hsa-miR-4506 1 0 0
chr3:190306489|190306716 hsa-miR-4647 1 0 0
chr3:190306489|190306716 hsa-miR-4669 1 0 0
chr3:190306489|190306716 hsa-miR-4754 1 0 0
chr3:190306489|190306716 hsa-miR-5087 0 1 0
chr3:190306489|190306716 hsa-miR-5681a 1 1 0
chr3:190306489|190306716 hsa-miR-6127 1 0 0
chr3:190306489|190306716 hsa-miR-6165 1 0 0
chr3:190306489|190306716 hsa-miR-8089 1 1 0
chr3:190306489|190306716 hsa-miR-141-5p 0 1 0
chr3:190306489|190306716 hsa-miR-6734-5p 1 0 0
chr3:190306489|190306716 hsa-miR-31-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6747-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6857-5p 0 1 0
chr3:190306489|190306716 hsa-miR-6804-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6089 1 0 0
chr3:190306489|190306716 hsa-miR-6807-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6730-5p 1 0 0
chr3:190306489|190306716 hsa-miR-138-2-3p 0 1 0
chr3:190306489|190306716 hsa-miR-200b-5p 1 0 0
chr3:190306489|190306716 hsa-miR-1292-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6772-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6796-5p 0 1 0
chr3:190306489|190306716 hsa-miR-6782-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6810-5p 1 0 0
chr3:190306489|190306716 hsa-miR-1229-5p 1 0 0
chr3:190306489|190306716 hsa-miR-4713-3p 1 1 0
chr3:190306489|190306716 hsa-miR-216a-3p 0 1 0
chr3:190306489|190306716 hsa-miR-4763-3p 1 0 0
chr3:190306489|190306716 hsa-miR-7107-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6774-5p 1 0 0
chr3:190306489|190306716 hsa-miR-5196-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6780b-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6836-5p 1 0 0
chr3:190306489|190306716 hsa-miR-4725-3p 1 0 0
chr3:190306489|190306716 hsa-miR-4726-5p 1 0 0
chr3:190306489|190306716 hsa-miR-4769-5p 0 1 0
chr3:190306489|190306716 hsa-miR-3198 1 0 0
chr3:190306489|190306716 hsa-miR-4747-5p 1 0 0
chr3:190306489|190306716 hsa-miR-6849-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:190306489|190306716
ORF Type ORF1
Protein Length 26
Nucleotide Length 81
Protein Sequence MYSISLDPHNITVRWEDQELQTTAYR
Nucleotide Sequence ATGTATTCTATCTCACTGGATCCCCACAACATCACTGTGAGGTGGGAAGATCAGGAATTACAAACCACCGCTTACAGATGA
CircID chr3:190306489|190306716
ORF Type ORF2
Protein Length 29
Nucleotide Length 87
Protein Sequence MIAPRLKSRSPDTNANTLSITSSCSSEIA
Nucleotide Sequence TTGATAGCACCAAGACTCAAATCCAGGTCTCCAGACACCAATGCCAACACCCTTTCCATTACATCATCTTGCTCAAGTGAAATAGCA
CircID chr3:190306489|190306716
ORF Type ORF3
Protein Length 43
Nucleotide Length 132
Protein Sequence MERVLALVSGDLDLSLGAINHRLCLSKAFGCCKLIASSVSGGL
Nucleotide Sequence ATGGAAAGGGTGTTGGCATTGGTGTCTGGAGACCTGGATTTGAGTCTTGGTGCTATCAATCACCGTCTGTGTTTGAGCAAGGCATTTGGCTGCTGTAAGCTTATTGCTTCATCTGTAAGCGGTGGTTTGTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab