CircRNA Information

General Information
circRNA Basic Information
CircID chr3:190306654|190306836
Strand +
CircType exon
Host Gene ENSG00000163347.5;
Algorism CIRI2;
Sequence CTTCATGTGGCTCAGTGCCTTCCTCTCTCTACCAGTCTATTTCCATTCTTTCAGCTGTGTCTGACATGTTTGTGCTCTGTTCCATTTTAACAACTGCTCTTACTTTTCCAGTCTGTACAGAATGCTATTTCACTTGAGCAAGATGATGTAATGGAAAGGGTGTTGGCATTGGTGTCTGGAGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:190306654|190306836 hsa-miR-186-5p 0 0 1
chr3:190306654|190306836 hsa-miR-186-3p 0 0 1
chr3:190306654|190306836 hsa-miR-379-5p 0 0 1
chr3:190306654|190306836 hsa-miR-379-3p 0 0 1
chr3:190306654|190306836 hsa-miR-506-5p 0 0 1
chr3:190306654|190306836 hsa-miR-506-3p 0 0 1
chr3:190306654|190306836 hsa-miR-559 0 0 1
chr3:190306654|190306836 hsa-miR-587 0 0 1
chr3:190306654|190306836 hsa-miR-766-5p 0 0 1
chr3:190306654|190306836 hsa-miR-766-3p 0 0 1
chr3:190306654|190306836 hsa-miR-1178-5p 0 0 1
chr3:190306654|190306836 hsa-miR-1178-3p 0 0 1
chr3:190306654|190306836 hsa-miR-1179 0 0 1
chr3:190306654|190306836 hsa-miR-548j-5p 0 0 1
chr3:190306654|190306836 hsa-miR-548j-3p 0 0 1
chr3:190306654|190306836 hsa-miR-548n 0 0 1
chr3:190306654|190306836 hsa-miR-1324 0 0 1
chr3:190306654|190306836 hsa-miR-875-3p 0 0 1
chr3:190306654|190306836 hsa-miR-885-5p 0 0 1
chr3:190306654|190306836 hsa-miR-548b-5p 0 0 1
chr3:190306654|190306836 hsa-miR-548d-5p 0 0 1
chr3:190306654|190306836 hsa-miR-548c-5p 0 0 1
chr3:190306654|190306836 hsa-miR-548a-5p 0 0 1
chr3:190306654|190306836 hsa-miR-548i 0 0 1
chr3:190306654|190306836 hsa-miR-124 0 0 1
chr3:190306654|190306836 hsa-miR-151-3p 0 0 1
chr3:190306654|190306836 hsa-miR-499-3p 0 0 1
chr3:190306654|190306836 hsa-miR-548h 0 0 1
chr3:190306654|190306836 hsa-miR-630 1 0 0
chr3:190306654|190306836 hsa-miR-765 1 0 0
chr3:190306654|190306836 hsa-miR-1270 1 0 0
chr3:190306654|190306836 hsa-miR-3132 1 0 0
chr3:190306654|190306836 hsa-miR-4462 1 0 0
chr3:190306654|190306836 hsa-miR-4490 1 0 0
chr3:190306654|190306836 hsa-miR-4499 1 0 0
chr3:190306654|190306836 hsa-miR-2392 1 0 0
chr3:190306654|190306836 hsa-miR-4672 1 0 0
chr3:190306654|190306836 hsa-miR-4739 1 0 0
chr3:190306654|190306836 hsa-miR-5093 1 0 0
chr3:190306654|190306836 hsa-miR-6081 1 0 0
chr3:190306654|190306836 hsa-miR-6124 1 0 0
chr3:190306654|190306836 hsa-miR-6125 1 0 0
chr3:190306654|190306836 hsa-miR-6133 1 0 0
chr3:190306654|190306836 hsa-miR-6894-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6880-5p 1 0 0
chr3:190306654|190306836 hsa-miR-4695-5p 1 0 0
chr3:190306654|190306836 hsa-miR-197-5p 1 0 0
chr3:190306654|190306836 hsa-miR-1292-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6770-5p 1 0 0
chr3:190306654|190306836 hsa-miR-1226-5p 1 0 0
chr3:190306654|190306836 hsa-miR-4796-3p 1 0 0
chr3:190306654|190306836 hsa-miR-1233-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6797-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6879-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6780b-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6729-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6735-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6831-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6731-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6758-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6856-5p 1 0 0
chr3:190306654|190306836 hsa-miR-7151-3p 1 0 0
chr3:190306654|190306836 hsa-miR-6849-5p 1 0 0
chr3:190306654|190306836 hsa-miR-6715b-5p 1 0 0
chr3:190306654|190306836 hsa-miR-3617-5p 1 0 0
chr3:190306654|190306836 hsa-miR-7161-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:190306654|190306836
ORF Type ORF1
Protein Length 30
Nucleotide Length 90
Protein Sequence MLLLFQSVQNAISLEQDDVMERVLALVSGD
Nucleotide Sequence CTGCTCTTACTTTTCCAGTCTGTACAGAATGCTATTTCACTTGAGCAAGATGATGTAATGGAAAGGGTGTTGGCATTGGTGTCTGGAGAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab