CircRNA Information

General Information
circRNA Basic Information
CircID chr3:196055080|196055242
Strand -
CircType exon
Host Gene ENSG00000072274.12;
Algorism CIRI2;DCC;
Sequence GATTCCTGAGTTGAACAAAGTGGCACGAGCAGCTGCAGAGGTCGCTGGTCAGTTCGTGATTAAACTAACCCATGATGTTGAATTGAACCTGGACTATGAGAGGTACAACAGCCAACTGCTTTCATTTGTGAGGGATCTGAACCAATACAGAGCAGACATAAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:196055080|196055242 hsa-miR-223-5p 0 0 1
chr3:196055080|196055242 hsa-miR-223-3p 0 0 1
chr3:196055080|196055242 hsa-miR-422a 0 1 1
chr3:196055080|196055242 hsa-miR-520g-5p 0 0 1
chr3:196055080|196055242 hsa-miR-520g-3p 0 0 1
chr3:196055080|196055242 hsa-miR-520h 0 0 1
chr3:196055080|196055242 hsa-miR-564 0 0 1
chr3:196055080|196055242 hsa-miR-571 0 0 1
chr3:196055080|196055242 hsa-miR-579-5p 0 0 1
chr3:196055080|196055242 hsa-miR-579-3p 0 0 1
chr3:196055080|196055242 hsa-miR-619-5p 0 0 1
chr3:196055080|196055242 hsa-miR-619-3p 0 0 1
chr3:196055080|196055242 hsa-miR-646 0 1 1
chr3:196055080|196055242 hsa-miR-653-5p 0 0 1
chr3:196055080|196055242 hsa-miR-653-3p 0 0 1
chr3:196055080|196055242 hsa-miR-758-5p 0 0 1
chr3:196055080|196055242 hsa-miR-758-3p 0 0 1
chr3:196055080|196055242 hsa-miR-1200 0 0 1
chr3:196055080|196055242 hsa-miR-1294 0 0 1
chr3:196055080|196055242 hsa-miR-219a-1-3p 0 1 1
chr3:196055080|196055242 hsa-miR-490-3p 0 0 1
chr3:196055080|196055242 hsa-miR-378 0 0 1
chr3:196055080|196055242 hsa-miR-219-2-3p 0 0 1
chr3:196055080|196055242 hsa-miR-219-1-3p 0 0 1
chr3:196055080|196055242 hsa-miR-602 1 0 0
chr3:196055080|196055242 hsa-miR-658 1 0 0
chr3:196055080|196055242 hsa-miR-921 1 1 0
chr3:196055080|196055242 hsa-miR-1202 1 0 0
chr3:196055080|196055242 hsa-miR-663b 1 0 0
chr3:196055080|196055242 hsa-miR-1538 1 0 0
chr3:196055080|196055242 hsa-miR-378b 0 1 0
chr3:196055080|196055242 hsa-miR-378c 0 1 0
chr3:196055080|196055242 hsa-miR-4507 1 0 0
chr3:196055080|196055242 hsa-miR-378i 0 1 0
chr3:196055080|196055242 hsa-miR-4634 1 0 0
chr3:196055080|196055242 hsa-miR-4688 1 0 0
chr3:196055080|196055242 hsa-miR-6131 0 1 0
chr3:196055080|196055242 hsa-miR-8055 1 0 0
chr3:196055080|196055242 hsa-miR-12115 1 0 0
chr3:196055080|196055242 hsa-miR-3677-5p 1 0 0
chr3:196055080|196055242 hsa-miR-593-5p 1 0 0
chr3:196055080|196055242 hsa-miR-6823-5p 1 0 0
chr3:196055080|196055242 hsa-miR-6834-5p 0 1 0
chr3:196055080|196055242 hsa-miR-3690 1 0 0
chr3:196055080|196055242 hsa-miR-4724-5p 1 0 0
chr3:196055080|196055242 hsa-miR-891a-3p 1 0 0
chr3:196055080|196055242 hsa-miR-4796-3p 0 1 0
chr3:196055080|196055242 hsa-miR-4709-5p 0 1 0
chr3:196055080|196055242 hsa-miR-4763-3p 1 0 0
chr3:196055080|196055242 hsa-miR-6812-5p 1 0 0
chr3:196055080|196055242 hsa-miR-6815-5p 1 0 0
chr3:196055080|196055242 hsa-miR-6722-3p 1 0 0
chr3:196055080|196055242 hsa-miR-6780a-5p 0 1 0
chr3:196055080|196055242 hsa-miR-6738-5p 0 1 0
chr3:196055080|196055242 hsa-miR-378a-3p 0 1 0
chr3:196055080|196055242 hsa-miR-9851-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:196055080|196055242
ORF Type ORF1
Protein Length 51
Nucleotide Length 153
Protein Sequence LNKVARAAAEVAGQFVIKLTHDVELNLDYERYNSQLLSFVRDLNQYRADIK
Nucleotide Sequence TTGAACAAAGTGGCACGAGCAGCTGCAGAGGTCGCTGGTCAGTTCGTGATTAAACTAACCCATGATGTTGAATTGAACCTGGACTATGAGAGGTACAACAGCCAACTGCTTTCATTTGTGAGGGATCTGAACCAATACAGAGCAGACATAAAG
CircID chr3:196055080|196055242
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MLCIGSDPSQMKAVGCCTSHSPGSIQHHGLV
Nucleotide Sequence CTGCTCTGTATTGGTTCAGATCCCTCACAAATGAAAGCAGTTGGCTGTTGTACCTCTCATAGTCCAGGTTCAATTCAACATCATGGGTTAGTTTAA
CircID chr3:196055080|196055242
ORF Type ORF2
Protein Length 51
Nucleotide Length 153
Protein Sequence MNKVARAAAEVAGQFVIKLTHDVELNLDYERYNSQLLSFVRDLNQYRADIK
Nucleotide Sequence TTGAACAAAGTGGCACGAGCAGCTGCAGAGGTCGCTGGTCAGTTCGTGATTAAACTAACCCATGATGTTGAATTGAACCTGGACTATGAGAGGTACAACAGCCAACTGCTTTCATTTGTGAGGGATCTGAACCAATACAGAGCAGACATAAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:196055080|196055242 AGGF1 1 3 0
chr3:196055080|196055242 RBM5 1 0 0
chr3:196055080|196055242 SLBP 2 0 0
chr3:196055080|196055242 MOV10 1 0 0
chr3:196055080|196055242 ELAVL1 1 0 2
chr3:196055080|196055242 SF3B4 1 0 0
chr3:196055080|196055242 FAM120A 0 0 1
chr3:196055080|196055242 CELF2 0 2 0
chr3:196055080|196055242 PRPF8 0 3 0
chr3:196055080|196055242 UPF1 5 0 1
chr3:196055080|196055242 TNRC6A 1 1 0
chr3:196055080|196055242 FMR1 4 0 2
chr3:196055080|196055242 FUS 1 0 0
chr3:196055080|196055242 GNL3 1 0 0
chr3:196055080|196055242 DGCR8 0 0 2
chr3:196055080|196055242 SRSF7 1 0 0
chr3:196055080|196055242 DROSHA 0 1 0
chr3:196055080|196055242 SRSF1 2 3 2
chr3:196055080|196055242 NOP58 2 1 1
chr3:196055080|196055242 U2AF1 3 0 0
chr3:196055080|196055242 U2AF2 9 6 0
chr3:196055080|196055242 SRSF9 1 0 0
chr3:196055080|196055242 DDX54 5 1 5
chr3:196055080|196055242 RBM10 1 1 0
chr3:196055080|196055242 HNRNPM 1 0 0
chr3:196055080|196055242 MSI2 1 0 0
chr3:196055080|196055242 SF3A3 2 0 0
chr3:196055080|196055242 PTBP1 1 0 1
chr3:196055080|196055242 HNRNPC 2 5 0
chr3:196055080|196055242 TRA2A 0 0 2
chr3:196055080|196055242 KHSRP 0 2 0
chr3:196055080|196055242 HNRNPA1 8 2 1
chr3:196055080|196055242 TIAL1 1 1 0
chr3:196055080|196055242 LARP7 1 1 0
chr3:196055080|196055242 SMNDC1 1 0 0
chr3:196055080|196055242 AUH 2 0 2
chr3:196055080|196055242 ACIN1 5 2 4
chr3:196055080|196055242 LIN28B 0 2 5
chr3:196055080|196055242 LIN28A 1 0 1
chr3:196055080|196055242 BCCIP 1 0 1
chr3:196055080|196055242 SND1 4 0 7
chr3:196055080|196055242 BUD13 3 0 1
chr3:196055080|196055242 IGF2BP3 1 0 0
chr3:196055080|196055242 IGF2BP2 3 6 5
chr3:196055080|196055242 TARDBP 0 2 1
chr3:196055080|196055242 YTHDC1 0 1 0
chr3:196055080|196055242 GTF2F1 1 0 1
chr3:196055080|196055242 RBFOX2 0 0 1
chr3:196055080|196055242 RBM47 1 0 1
chr3:196055080|196055242 SLTM 1 0 0
chr3:196055080|196055242 EIF4G2 1 0 0
chr3:196055080|196055242 CSTF2T 1 0 1
chr3:196055080|196055242 FXR2 0 0 1
chr3:196055080|196055242 SAFB2 1 0 0
chr3:196055080|196055242 HNRNPA2B1 0 1 0
chr3:196055080|196055242 RBM22 0 2 0
chr3:196055080|196055242 XRN2 3 0 0
chr3:196055080|196055242 HNRNPK 0 3 0
chr3:196055080|196055242 AGO2 3 0 2
chr3:196055080|196055242 EIF4A3 5 6 2
chr3:196055080|196055242 FBL 1 1 2
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab