CircNet

General Information

circRNA Basic Information

CircID	chr3:196055080\|196060247
Strand	-
CircType	exon
Host Gene	ENSG00000072274.12;
Algorism	CIRI2;find_circ;DCC;
Sequence	GTACCAGCAACTTCAAGGTTTCTGCCAGCCCACTGTTGTATACGCTTATTGAGAAAACAATGCAAAATGTGAAGCATCCGGTTACTGGGCAATTTCTATATCAGGACAGCAACTGGGCCAGCAAAGTTGAGAAACTCACTTTAGACAATGCTGCTTTCCCTTTCCTTGCATATTCTGGAATCCCAGCAGTTTCTTTCTGTTTTTGCGAGGACACAGATTATCCTTATTTGGGTACCACCATGGACACCTATAAGGAACTGATTGAGAGGATTCCTGAGTTGAACAAAGTGGCACGAGCAGCTGCAGAGGTCGCTGGTCAGTTCGTGATTAAACTAACCCATGATGTTGAATTGAACCTGGACTATGAGAGGTACAACAGCCAACTGCTTTCATTTGTGAGGGATCTGAACCAATACAGAGCAGACATAAAG

circRNA Expression in different cancers

circRNA-miRNA-gene regulatory network

Target miRNAs

CircID	miRNA	PITA	miRanda	targetScan
chr3:196055080\|196060247	hsa-miR-223-3p	0	1	1
chr3:196055080\|196060247	hsa-miR-219a-1-3p	0	1	1

Target Genes

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Target miRNA Expression in different cancers

circRNA Open Reading Frame (ORF)

CircID	chr3:196055080\|196060247
ORF Type	ORF1
Protein Length	124
Nucleotide Length	372
Protein Sequence	MQNVKHPVTGQFLYQDSNWASKVEKLTLDNAAFPFLAYSGIPAVSFCFCEDTDYPYLGTTMDTYKELIERIPELNKVARAAAEVAGQFVIKLTHDVELNLDYERYNSQLLSFVRDLNQYRADIK
Nucleotide Sequence	ATGCAAAATGTGAAGCATCCGGTTACTGGGCAATTTCTATATCAGGACAGCAACTGGGCCAGCAAAGTTGAGAAACTCACTTTAGACAATGCTGCTTTCCCTTTCCTTGCATATTCTGGAATCCCAGCAGTTTCTTTCTGTTTTTGCGAGGACACAGATTATCCTTATTTGGGTACCACCATGGACACCTATAAGGAACTGATTGAGAGGATTCCTGAGTTGAACAAAGTGGCACGAGCAGCTGCAGAGGTCGCTGGTCAGTTCGTGATTAAACTAACCCATGATGTTGAATTGAACCTGGACTATGAGAGGTACAACAGCCAACTGCTTTCATTTGTGAGGGATCTGAACCAATACAGAGCAGACATAAAG

CircID	chr3:196055080\|196060247
ORF Type	ORF2
Protein Length	38
Nucleotide Length	114
Protein Sequence	MLLSLSLHILESQQFLSVFARTQIILIWVPPWTPIRN*
Nucleotide Sequence	ATGCTGCTTTCCCTTTCCTTGCATATTCTGGAATCCCAGCAGTTTCTTTCTGTTTTTGCGAGGACACAGATTATCCTTATTTGGGTACCACCATGGACACCTATAAGGAACTGA

CircID	chr3:196055080\|196060247
ORF Type	ORF3
Protein Length	64
Nucleotide Length	192
Protein Sequence	FNHELTSDLCSCSCHFVQLRNPLNQFLIGVHGGTQIRIICVLAKTERNCWDSRICKERESSIV*
Nucleotide Sequence	TTTAATCACGAACTGACCAGCGACCTCTGCAGCTGCTCGTGCCACTTTGTTCAACTCAGGAATCCTCTCAATCAGTTCCTTATAGGTGTCCATGGTGGTACCCAAATAAGGATAATCTGTGTCCTCGCAAAAACAGAAAGAAACTGCTGGGATTCCAGAATATGCAAGGAAAGGGAAAGCAGCATTGTCTAA

RNA Binding Protein (RBP) of circRNA

CircID	RBP	Number of Upstream Sites	Number of Downstream Sites	Number of Circ Exons Sites
chr3:196055080\|196060247	AGGF1	0	3	0
chr3:196055080\|196060247	RBM5	0	0	2
chr3:196055080\|196060247	KHSRP	2	2	0
chr3:196055080\|196060247	ELAVL1	0	0	5
chr3:196055080\|196060247	SF3B4	1	0	0
chr3:196055080\|196060247	FAM120A	0	0	1
chr3:196055080\|196060247	CELF2	0	2	0
chr3:196055080\|196060247	PRPF8	0	3	0
chr3:196055080\|196060247	UPF1	0	0	2
chr3:196055080\|196060247	TNRC6A	0	1	0
chr3:196055080\|196060247	FMR1	0	0	4
chr3:196055080\|196060247	DGCR8	0	0	2
chr3:196055080\|196060247	SRSF7	0	0	2
chr3:196055080\|196060247	DROSHA	0	1	0
chr3:196055080\|196060247	SRSF1	0	3	5
chr3:196055080\|196060247	NOP58	2	1	3
chr3:196055080\|196060247	U2AF1	2	0	3
chr3:196055080\|196060247	U2AF2	6	6	3
chr3:196055080\|196060247	SRSF9	0	0	1
chr3:196055080\|196060247	DDX54	1	1	14
chr3:196055080\|196060247	HNRNPK	0	3	1
chr3:196055080\|196060247	HNRNPA2B1	0	1	0
chr3:196055080\|196060247	SF3A3	2	0	1
chr3:196055080\|196060247	PTBP1	0	0	3
chr3:196055080\|196060247	HNRNPC	3	5	0
chr3:196055080\|196060247	TRA2A	0	0	5
chr3:196055080\|196060247	DHX9	2	0	1
chr3:196055080\|196060247	ACIN1	4	2	14
chr3:196055080\|196060247	TIAL1	0	1	0
chr3:196055080\|196060247	LARP7	0	1	0
chr3:196055080\|196060247	SMNDC1	3	0	1
chr3:196055080\|196060247	MSI2	0	0	1
chr3:196055080\|196060247	HNRNPA1	2	2	1
chr3:196055080\|196060247	RBM10	1	1	0
chr3:196055080\|196060247	LIN28B	0	2	6
chr3:196055080\|196060247	LIN28A	0	0	1
chr3:196055080\|196060247	BCCIP	0	0	1
chr3:196055080\|196060247	SND1	0	0	16
chr3:196055080\|196060247	GTF2F1	0	0	1
chr3:196055080\|196060247	IGF2BP3	0	0	2
chr3:196055080\|196060247	IGF2BP2	1	6	11
chr3:196055080\|196060247	NPM1	1	0	0
chr3:196055080\|196060247	AUH	0	0	3
chr3:196055080\|196060247	TARDBP	4	2	1
chr3:196055080\|196060247	YTHDC1	0	1	1
chr3:196055080\|196060247	BUD13	0	0	3
chr3:196055080\|196060247	RBFOX2	0	0	2
chr3:196055080\|196060247	RBM47	1	0	4
chr3:196055080\|196060247	DDX42	2	0	0
chr3:196055080\|196060247	CSTF2T	0	0	3
chr3:196055080\|196060247	FXR2	0	0	1
chr3:196055080\|196060247	RBM22	0	2	0
chr3:196055080\|196060247	XRN2	2	0	0
chr3:196055080\|196060247	AGO2	0	0	9
chr3:196055080\|196060247	EIF4A3	7	6	5
chr3:196055080\|196060247	FBL	1	1	2

CircRNA Information