CircRNA Information

General Information
circRNA Basic Information
CircID chr3:196234463|196234624
Strand -
CircType exon
Host Gene ENSG00000161217.10;
Algorism CIRI2;
Sequence CCCACTTGAGGAAGACTTCCCCACGGACTCACACTGGTGATGGGGCGAACGTTCAAGACGAAGCCAGCAGTCCTTTCCAAGACTCTTTTGTCTTTTAGGGATCCTCAATACAAAACAACCCAACTAATCCAGGATATGTGTTCAAAACAGTCAGTTTTCCCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:196234463|196234624 hsa-miR-452-5p 0 0 1
chr3:196234463|196234624 hsa-miR-452-3p 0 0 1
chr3:196234463|196234624 hsa-miR-432-5p 0 0 1
chr3:196234463|196234624 hsa-miR-432-3p 0 0 1
chr3:196234463|196234624 hsa-miR-1264 0 0 1
chr3:196234463|196234624 hsa-miR-887-5p 0 0 1
chr3:196234463|196234624 hsa-miR-887-3p 0 0 1
chr3:196234463|196234624 hsa-miR-924 0 1 1
chr3:196234463|196234624 hsa-miR-943 0 0 1
chr3:196234463|196234624 hsa-miR-1226-5p 0 0 1
chr3:196234463|196234624 hsa-miR-1226-3p 0 0 1
chr3:196234463|196234624 hsa-miR-548e-5p 0 0 1
chr3:196234463|196234624 hsa-miR-548e-3p 0 0 1
chr3:196234463|196234624 hsa-miR-1288-5p 0 0 1
chr3:196234463|196234624 hsa-miR-1288-3p 0 0 1
chr3:196234463|196234624 hsa-miR-491-5p 1 1 1
chr3:196234463|196234624 hsa-miR-1224-5p 0 0 1
chr3:196234463|196234624 hsa-miR-199a-5p 0 0 1
chr3:196234463|196234624 hsa-miR-199b-5p 0 0 1
chr3:196234463|196234624 hsa-miR-548a-3p 0 0 1
chr3:196234463|196234624 hsa-miR-548f 0 0 1
chr3:196234463|196234624 hsa-miR-1185 0 0 1
chr3:196234463|196234624 hsa-miR-1182 1 1 0
chr3:196234463|196234624 hsa-miR-3169 0 1 0
chr3:196234463|196234624 hsa-miR-4302 0 1 0
chr3:196234463|196234624 hsa-miR-4259 1 0 0
chr3:196234463|196234624 hsa-miR-4271 1 0 0
chr3:196234463|196234624 hsa-miR-3911 1 0 0
chr3:196234463|196234624 hsa-miR-4538 1 0 0
chr3:196234463|196234624 hsa-miR-4658 1 0 0
chr3:196234463|196234624 hsa-miR-3150a-3p 1 0 0
chr3:196234463|196234624 hsa-miR-3189-5p 1 1 0
chr3:196234463|196234624 hsa-miR-6884-3p 0 1 0
chr3:196234463|196234624 hsa-miR-5580-5p 0 1 0
chr3:196234463|196234624 hsa-miR-3690 1 0 0
chr3:196234463|196234624 hsa-miR-6737-5p 1 0 0
chr3:196234463|196234624 hsa-miR-6780b-5p 1 1 0
chr3:196234463|196234624 hsa-miR-4725-3p 1 0 0
chr3:196234463|196234624 hsa-miR-6777-5p 1 0 0
chr3:196234463|196234624 hsa-miR-6889-5p 1 0 0
chr3:196234463|196234624 hsa-miR-939-5p 1 0 0
chr3:196234463|196234624 hsa-miR-4747-5p 1 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr3:196234463|196234624
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MVMGRTFKTKPAVLSKTLLSFRDPQYKTTQLIQDMCSKQSVFP
Nucleotide Sequence CTGGTGATGGGGCGAACGTTCAAGACGAAGCCAGCAGTCCTTTCCAAGACTCTTTTGTCTTTTAGGGATCCTCAATACAAAACAACCCAACTAATCCAGGATATGTGTTCAAAACAGTCAGTTTTCCCC

CircID chr3:196234463|196234624
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MRKTSPRTHTGDGANVQDEASSPFQDSFVF
Nucleotide Sequence TTGAGGAAGACTTCCCCACGGACTCACACTGGTGATGGGGCGAACGTTCAAGACGAAGCCAGCAGTCCTTTCCAAGACTCTTTTGTCTTTTAG

CircID chr3:196234463|196234624
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MGCFVLRIPKRQKSLGKDCWLRLERSPHHQCESVGKSSSSG
Nucleotide Sequence TTGGGTTGTTTTGTATTGAGGATCCCTAAAAGACAAAAGAGTCTTGGAAAGGACTGCTGGCTTCGTCTTGAACGTTCGCCCCATCACCAGTGTGAGTCCGTGGGGAAGTCTTCCTCAAGTGGG

CircID chr3:196234463|196234624
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MERTAGFVLNVRPITSVSPWGSLPQV
Nucleotide Sequence TTGGAAAGGACTGCTGGCTTCGTCTTGAACGTTCGCCCCATCACCAGTGTGAGTCCGTGGGGAAGTCTTCCTCAAGTG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites