CircRNA Information

General Information
circRNA Basic Information
CircID chr3:196391813|196393619
Strand -
CircType exon
Host Gene ENSG00000163960.11;
Algorism find_circ;CIRI2;DCC;
Sequence CTCCTAAAAGACGACGGCCTGCACGTTCAATTTTTGATGGTTTCCGGGATTTTCAGACTGAAACTAGTAGTTCGGCAAGAACAAGAATTAAGAAATGGAGGAGCTATCGATAAGAAATTAACTACCCTTGCAGATCTATTCCGGCCACCCATTGATTTGATGCATAAAGGCAGCTTTGAAACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:196391813|196393619 hsa-miR-31-5p 0 0 1
chr3:196391813|196393619 hsa-miR-31-3p 0 0 1
chr3:196391813|196393619 hsa-miR-494-5p 0 0 1
chr3:196391813|196393619 hsa-miR-494-3p 0 0 1
chr3:196391813|196393619 hsa-miR-606 0 0 1
chr3:196391813|196393619 hsa-miR-660-5p 0 0 1
chr3:196391813|196393619 hsa-miR-660-3p 0 0 1
chr3:196391813|196393619 hsa-miR-765 0 0 1
chr3:196391813|196393619 hsa-miR-708-5p 0 0 1
chr3:196391813|196393619 hsa-miR-708-3p 0 0 1
chr3:196391813|196393619 hsa-miR-1180-5p 0 0 1
chr3:196391813|196393619 hsa-miR-1180-3p 0 0 1
chr3:196391813|196393619 hsa-miR-1234-3p 0 0 1
chr3:196391813|196393619 hsa-miR-1290 0 0 1
chr3:196391813|196393619 hsa-miR-1234 0 0 1
chr3:196391813|196393619 hsa-miR-28-5p 0 0 1
chr3:196391813|196393619 hsa-miR-4494 0 1 0
chr3:196391813|196393619 hsa-miR-4534 1 0 0
chr3:196391813|196393619 hsa-miR-4739 1 0 0
chr3:196391813|196393619 hsa-miR-5698 1 0 0
chr3:196391813|196393619 hsa-miR-5739 1 0 0
chr3:196391813|196393619 hsa-miR-6077 1 0 0
chr3:196391813|196393619 hsa-miR-12118 1 0 0
chr3:196391813|196393619 hsa-miR-6809-5p 1 0 0
chr3:196391813|196393619 hsa-miR-6894-5p 1 0 0
chr3:196391813|196393619 hsa-miR-766-5p 1 0 0
chr3:196391813|196393619 hsa-miR-7847-3p 1 0 0
chr3:196391813|196393619 hsa-miR-8069 1 0 0
chr3:196391813|196393619 hsa-miR-4773 0 1 0
chr3:196391813|196393619 hsa-miR-6731-3p 0 1 0
chr3:196391813|196393619 hsa-miR-1343-5p 1 0 0
chr3:196391813|196393619 hsa-miR-6726-5p 1 0 0
chr3:196391813|196393619 hsa-miR-6751-5p 1 0 0
chr3:196391813|196393619 hsa-miR-10396b-5p 1 0 0
chr3:196391813|196393619 hsa-miR-4723-5p 1 1 0
chr3:196391813|196393619 hsa-miR-939-5p 1 0 0
chr3:196391813|196393619 hsa-miR-6500-5p 1 0 0
chr3:196391813|196393619 hsa-miR-151a-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:196391813|196393619
ORF Type ORF1
Protein Length 49
Nucleotide Length 147
Protein Sequence MVSGIFRLKLVVRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFET
Nucleotide Sequence ATGGTTTCCGGGATTTTCAGACTGAAACTAGTAGTTCGGCAAGAACAAGAATTAAGAAATGGAGGAGCTATCGATAAGAAATTAACTACCCTTGCAGATCTATTCCGGCCACCCATTGATTTGATGCATAAAGGCAGCTTTGAAACA
CircID chr3:196391813|196393619
ORF Type ORF2
Protein Length 42
Nucleotide Length 126
Protein Sequence MGGRNRSARVVNFLSIAPPFLNSCSCRTTSFSLKIPETIKN*
Nucleotide Sequence ATGGGTGGCCGGAATAGATCTGCAAGGGTAGTTAATTTCTTATCGATAGCTCCTCCATTTCTTAATTCTTGTTCTTGCCGAACTACTAGTTTCAGTCTGAAAATCCCGGAAACCATCAAAAATTGA
CircID chr3:196391813|196393619
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MPLCIKSMGGRNRSARVVNFLSIAPPFLNSCSCRIVSV
Nucleotide Sequence CTGCCTTTATGCATCAAATCAATGGGTGGCCGGAATAGATCTGCAAGGGTAGTTAATTTCTTATCGATAGCTCCTCCATTTCTTAATTCTTGTTCTTGCCGAATAGTTTCAGTCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:196391813|196393619 NOP56 2 0 0
chr3:196391813|196393619 MOV10 1 0 1
chr3:196391813|196393619 ELAVL1 0 0 2
chr3:196391813|196393619 FAM120A 0 0 1
chr3:196391813|196393619 PRPF8 0 0 1
chr3:196391813|196393619 CPSF6 0 0 1
chr3:196391813|196393619 FUS 0 1 0
chr3:196391813|196393619 SRSF1 0 0 2
chr3:196391813|196393619 NOP58 1 1 3
chr3:196391813|196393619 U2AF1 0 0 1
chr3:196391813|196393619 U2AF2 5 4 3
chr3:196391813|196393619 DDX54 0 1 3
chr3:196391813|196393619 RBM10 1 0 0
chr3:196391813|196393619 HNRNPM 0 1 0
chr3:196391813|196393619 PTBP1 0 0 1
chr3:196391813|196393619 HNRNPC 1 1 0
chr3:196391813|196393619 TRA2A 0 0 2
chr3:196391813|196393619 ZNF184 0 0 1
chr3:196391813|196393619 DDX3X 1 0 1
chr3:196391813|196393619 SMNDC1 0 0 1
chr3:196391813|196393619 MSI1 0 1 0
chr3:196391813|196393619 LIN28B 0 1 0
chr3:196391813|196393619 IGF2BP1 0 0 1
chr3:196391813|196393619 IGF2BP2 2 2 7
chr3:196391813|196393619 FTO 1 0 0
chr3:196391813|196393619 TARDBP 2 0 0
chr3:196391813|196393619 BUD13 0 1 4
chr3:196391813|196393619 RBM47 0 0 1
chr3:196391813|196393619 SLTM 0 0 1
chr3:196391813|196393619 EIF4G2 1 0 1
chr3:196391813|196393619 TIA1 0 1 0
chr3:196391813|196393619 TIAL1 0 1 0
chr3:196391813|196393619 DKC1 1 0 0
chr3:196391813|196393619 FBL 1 0 1
chr3:196391813|196393619 EIF4A3 2 2 6
chr3:196391813|196393619 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab