CircRNA Information

General Information
circRNA Basic Information
CircID chr3:196391813|196403019
Strand -
CircType exon
Host Gene ENSG00000163960.11;
Algorism find_circ;CIRI2;DCC;
Sequence AGAAGAAGTTCGTGCCCCAATTCCTCAAAAGCAGGAAATACTGGTGGAACCAGAACCATTATTTGGTGAAATGGAGTCTGTTGCCCAGGCTGGAGTGCAGTGATACAATCCTTGCTTACTGCAGTCTCAAACTCCTGGGCTCAAGGATTCCTCCCACCTCAGCCTTCTATAGGTGCATGCCACCACGCCTGGCTAATTGTTTTGTTTTGTGGAGACAGGGCATTGCTGTTTGCCCTGGCTGCTATGGAACTGATCTCAAGCAAGCTTCCTGCCTGCCTTGGCCTTGGCCTTGGCCCATATTGGAGTTACGGGCGTGAGCCACCACACCTGGCCGCTTTCTTCCTTTTTTTATCTCTGAATTGGTGTACAGTAAGGACGACACTGAGAATGACTTTTTACACTCCTAAAAGACGACGGCCTGCACGTTCAATTTTTGATGGTTTCCGGGATTTTCAGACTGAAACTAGTAGTTCGGCAAGAACAAGAATTAAGAAATGGAGGAGCTATCGATAAGAAATTAACTACCCTTGCAGATCTATTCCGGCCACCCATTGATTTGATGCATAAAGGCAGCTTTGAAACA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:196391813|196403019 hsa-miR-31-5p 0 0 1
chr3:196391813|196403019 hsa-miR-31-3p 0 0 1
chr3:196391813|196403019 hsa-miR-200b-5p 0 0 1
chr3:196391813|196403019 hsa-miR-200b-3p 0 0 1
chr3:196391813|196403019 hsa-miR-200c-5p 0 0 1
chr3:196391813|196403019 hsa-miR-200c-3p 0 0 1
chr3:196391813|196403019 hsa-miR-429 0 0 1
chr3:196391813|196403019 hsa-miR-494-5p 0 0 1
chr3:196391813|196403019 hsa-miR-494-3p 0 0 1
chr3:196391813|196403019 hsa-miR-517-5p 0 0 1
chr3:196391813|196403019 hsa-miR-517a-3p 0 0 1
chr3:196391813|196403019 hsa-miR-517c-3p 0 0 1
chr3:196391813|196403019 hsa-miR-606 0 0 1
chr3:196391813|196403019 hsa-miR-660-5p 0 0 1
chr3:196391813|196403019 hsa-miR-660-3p 0 0 1
chr3:196391813|196403019 hsa-miR-765 0 0 1
chr3:196391813|196403019 hsa-miR-708-5p 0 0 1
chr3:196391813|196403019 hsa-miR-708-3p 0 0 1
chr3:196391813|196403019 hsa-miR-1180-5p 0 0 1
chr3:196391813|196403019 hsa-miR-1180-3p 0 0 1
chr3:196391813|196403019 hsa-miR-1234-3p 0 0 1
chr3:196391813|196403019 hsa-miR-1290 0 0 1
chr3:196391813|196403019 hsa-miR-6078 1 1 1
chr3:196391813|196403019 hsa-miR-1234 0 0 1
chr3:196391813|196403019 hsa-miR-143-5p 1 1 1
chr3:196391813|196403019 hsa-miR-6749-3p 1 1 1
chr3:196391813|196403019 hsa-miR-6809-5p 1 1 1
chr3:196391813|196403019 hsa-miR-212-5p 1 1 1
chr3:196391813|196403019 hsa-miR-6894-5p 1 1 1
chr3:196391813|196403019 hsa-miR-766-5p 1 1 1
chr3:196391813|196403019 hsa-miR-139-3p 1 1 1
chr3:196391813|196403019 hsa-miR-7847-3p 1 1 1
chr3:196391813|196403019 hsa-miR-3064-5p 1 1 1
chr3:196391813|196403019 hsa-miR-8069 1 1 1
chr3:196391813|196403019 hsa-miR-874-3p 1 1 1
chr3:196391813|196403019 hsa-miR-28-5p 0 0 1
chr3:196391813|196403019 hsa-miR-3907 1 0 0
chr3:196391813|196403019 hsa-miR-4494 0 1 0
chr3:196391813|196403019 hsa-miR-4534 1 0 0
chr3:196391813|196403019 hsa-miR-4739 1 0 0
chr3:196391813|196403019 hsa-miR-5698 1 0 0
chr3:196391813|196403019 hsa-miR-5739 1 0 0
chr3:196391813|196403019 hsa-miR-6077 1 0 0
chr3:196391813|196403019 hsa-miR-6165 0 1 0
chr3:196391813|196403019 hsa-miR-12118 1 0 0
chr3:196391813|196403019 hsa-miR-323a-5p 1 0 0
chr3:196391813|196403019 hsa-miR-15b-3p 1 1 0
chr3:196391813|196403019 hsa-miR-4773 0 1 0
chr3:196391813|196403019 hsa-miR-6731-3p 0 1 0
chr3:196391813|196403019 hsa-miR-1343-5p 1 0 0
chr3:196391813|196403019 hsa-miR-6726-5p 1 0 0
chr3:196391813|196403019 hsa-miR-6751-5p 1 0 0
chr3:196391813|196403019 hsa-miR-6808-5p 0 1 0
chr3:196391813|196403019 hsa-miR-10396b-5p 1 0 0
chr3:196391813|196403019 hsa-miR-4723-5p 1 1 0
chr3:196391813|196403019 hsa-miR-939-5p 1 0 0
chr3:196391813|196403019 hsa-miR-6500-5p 1 0 0
chr3:196391813|196403019 hsa-miR-151a-3p 0 1 0
chr3:196391813|196403019 hsa-miR-371b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:196391813|196403019
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MPLCIKSMGGRNRSARVVNFLSIAPPFLNSCSCRIVSV
Nucleotide Sequence CTGCCTTTATGCATCAAATCAATGGGTGGCCGGAATAGATCTGCAAGGGTAGTTAATTTCTTATCGATAGCTCCTCCATTTCTTAATTCTTGTTCTTGCCGAATAGTTTCAGTCTGA
CircID chr3:196391813|196403019
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MVEPEPLFGAPKRRRPARSIFDGFRDFQTETIRQEQELRNGGAIDKKLTTLADLFRPPIDLMHKGSFET
Nucleotide Sequence CTGGTGGAACCAGAACCATTATTTGGTGCTCCTAAAAGACGACGGCCTGCACGTTCAATTTTTGATGGTTTCCGGGATTTTCAGACTGAAACTATTCGGCAAGAACAAGAATTAAGAAATGGAGGAGCTATCGATAAGAAATTAACTACCCTTGCAGATCTATTCCGGCCACCCATTGATTTGATGCATAAAGGCAGCTTTGAAACA
CircID chr3:196391813|196403019
ORF Type ORF3
Protein Length 30
Nucleotide Length 93
Protein Sequence MVLLKDDGLHVQFLMVSGIFRLKLFGKNKN
Nucleotide Sequence TTGGTGCTCCTAAAAGACGACGGCCTGCACGTTCAATTTTTGATGGTTTCCGGGATTTTCAGACTGAAACTATTCGGCAAGAACAAGAATTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:196391813|196403019 U2AF2 11 4 8
chr3:196391813|196403019 MOV10 1 0 1
chr3:196391813|196403019 ELAVL1 1 0 2
chr3:196391813|196403019 ZNF184 0 0 1
chr3:196391813|196403019 FAM120A 0 0 1
chr3:196391813|196403019 PRPF8 0 0 3
chr3:196391813|196403019 TAF15 2 0 0
chr3:196391813|196403019 CPSF6 1 0 1
chr3:196391813|196403019 FUS 0 1 0
chr3:196391813|196403019 SRSF1 1 0 2
chr3:196391813|196403019 NOP58 1 1 4
chr3:196391813|196403019 SRSF3 1 0 0
chr3:196391813|196403019 U2AF1 3 0 4
chr3:196391813|196403019 NOP56 0 0 1
chr3:196391813|196403019 DDX54 0 1 3
chr3:196391813|196403019 HNRNPM 0 1 0
chr3:196391813|196403019 PTBP1 0 0 1
chr3:196391813|196403019 HNRNPC 2 1 0
chr3:196391813|196403019 TRA2A 1 0 3
chr3:196391813|196403019 DHX9 0 0 2
chr3:196391813|196403019 DDX3X 0 0 1
chr3:196391813|196403019 TIAL1 0 1 0
chr3:196391813|196403019 SMNDC1 2 0 1
chr3:196391813|196403019 MSI1 0 1 0
chr3:196391813|196403019 ACIN1 1 0 0
chr3:196391813|196403019 LIN28B 0 1 0
chr3:196391813|196403019 IGF2BP1 0 0 1
chr3:196391813|196403019 IGF2BP2 1 2 12
chr3:196391813|196403019 TARDBP 0 0 2
chr3:196391813|196403019 BUD13 2 1 6
chr3:196391813|196403019 RBFOX2 1 0 0
chr3:196391813|196403019 RBM47 1 0 2
chr3:196391813|196403019 SLTM 0 0 1
chr3:196391813|196403019 EIF4G2 0 0 1
chr3:196391813|196403019 TIA1 0 1 0
chr3:196391813|196403019 XRN2 1 0 0
chr3:196391813|196403019 FBL 0 0 2
chr3:196391813|196403019 EIF4A3 2 2 7
chr3:196391813|196403019 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab