CircRNA Information

General Information
circRNA Basic Information
CircID chr3:196935968|196936126
Strand -
CircType exon
Host Gene ENSG00000114503.9;
Algorism CIRI2;
Sequence CTTCTGTGACTGTCAAACATTCCCTCTTCAAGCTCCCTTTTAAAACCCAGTCCATTCCCAACATCACTGAAAATGAAAAGAATAAACTTGCTGGTCCTCATGTCAAGGCAGTGTTTTCATTGTCTCTTGATATTTTATCCCATTTCCTATTGACAACAT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:196935968|196936126 hsa-miR-141-5p 0 0 1
chr3:196935968|196936126 hsa-miR-141-3p 0 0 1
chr3:196935968|196936126 hsa-miR-206 0 0 1
chr3:196935968|196936126 hsa-miR-200a-5p 0 0 1
chr3:196935968|196936126 hsa-miR-200a-3p 0 0 1
chr3:196935968|196936126 hsa-miR-335-5p 0 0 1
chr3:196935968|196936126 hsa-miR-335-3p 0 0 1
chr3:196935968|196936126 hsa-miR-489-5p 0 0 1
chr3:196935968|196936126 hsa-miR-489-3p 0 0 1
chr3:196935968|196936126 hsa-miR-570-5p 0 0 1
chr3:196935968|196936126 hsa-miR-570-3p 0 0 1
chr3:196935968|196936126 hsa-miR-579-5p 0 0 1
chr3:196935968|196936126 hsa-miR-579-3p 0 0 1
chr3:196935968|196936126 hsa-miR-613 0 0 1
chr3:196935968|196936126 hsa-miR-629-5p 0 0 1
chr3:196935968|196936126 hsa-miR-629-3p 0 0 1
chr3:196935968|196936126 hsa-miR-634 0 0 1
chr3:196935968|196936126 hsa-miR-920 1 0 1
chr3:196935968|196936126 hsa-miR-1288-5p 0 0 1
chr3:196935968|196936126 hsa-miR-1288-3p 0 0 1
chr3:196935968|196936126 hsa-miR-1224-5p 0 1 1
chr3:196935968|196936126 hsa-miR-1269 0 0 1
chr3:196935968|196936126 hsa-miR-1 0 0 1
chr3:196935968|196936126 hsa-miR-514 0 0 1
chr3:196935968|196936126 hsa-miR-658 1 0 0
chr3:196935968|196936126 hsa-miR-762 1 0 0
chr3:196935968|196936126 hsa-miR-1268a 1 0 0
chr3:196935968|196936126 hsa-miR-3125 1 0 0
chr3:196935968|196936126 hsa-miR-3138 1 0 0
chr3:196935968|196936126 hsa-miR-3147 1 0 0
chr3:196935968|196936126 hsa-miR-3154 1 0 0
chr3:196935968|196936126 hsa-miR-1268b 1 0 0
chr3:196935968|196936126 hsa-miR-4463 1 0 0
chr3:196935968|196936126 hsa-miR-4510 1 0 0
chr3:196935968|196936126 hsa-miR-1587 1 0 0
chr3:196935968|196936126 hsa-miR-4651 1 0 0
chr3:196935968|196936126 hsa-miR-4739 1 0 0
chr3:196935968|196936126 hsa-miR-5787 1 0 0
chr3:196935968|196936126 hsa-miR-6085 1 0 0
chr3:196935968|196936126 hsa-miR-6086 1 0 0
chr3:196935968|196936126 hsa-miR-6090 1 0 0
chr3:196935968|196936126 hsa-miR-6127 1 0 0
chr3:196935968|196936126 hsa-miR-6130 1 0 0
chr3:196935968|196936126 hsa-miR-6133 1 0 0
chr3:196935968|196936126 hsa-miR-12115 1 0 0
chr3:196935968|196936126 hsa-miR-12128 1 0 0
chr3:196935968|196936126 hsa-miR-153-5p 0 1 0
chr3:196935968|196936126 hsa-miR-4433b-3p 1 0 0
chr3:196935968|196936126 hsa-miR-6861-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6825-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6728-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6873-5p 1 1 0
chr3:196935968|196936126 hsa-miR-4709-3p 1 1 0
chr3:196935968|196936126 hsa-miR-6776-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6716-5p 1 1 0
chr3:196935968|196936126 hsa-miR-6805-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6827-5p 1 0 0
chr3:196935968|196936126 hsa-miR-3126-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6760-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6740-5p 1 0 0
chr3:196935968|196936126 hsa-miR-193b-5p 1 1 0
chr3:196935968|196936126 hsa-miR-4640-5p 1 0 0
chr3:196935968|196936126 hsa-miR-149-3p 1 0 0
chr3:196935968|196936126 hsa-miR-6717-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6824-5p 1 0 0
chr3:196935968|196936126 hsa-miR-3162-5p 1 0 0
chr3:196935968|196936126 hsa-let-7g-5p 1 0 0
chr3:196935968|196936126 hsa-miR-7846-3p 1 0 0
chr3:196935968|196936126 hsa-miR-6826-5p 0 1 0
chr3:196935968|196936126 hsa-miR-532-5p 0 1 0
chr3:196935968|196936126 hsa-miR-625-5p 1 1 0
chr3:196935968|196936126 hsa-miR-483-5p 1 0 0
chr3:196935968|196936126 hsa-miR-200b-3p 0 1 0
chr3:196935968|196936126 hsa-miR-1343-5p 1 0 0
chr3:196935968|196936126 hsa-miR-5001-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6726-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6813-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6763-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6779-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6797-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6875-5p 1 0 0
chr3:196935968|196936126 hsa-miR-3620-5p 1 0 0
chr3:196935968|196936126 hsa-miR-4728-5p 1 0 0
chr3:196935968|196936126 hsa-miR-5196-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6780b-5p 1 0 0
chr3:196935968|196936126 hsa-miR-10526-3p 1 1 0
chr3:196935968|196936126 hsa-miR-4632-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6846-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6848-5p 1 0 0
chr3:196935968|196936126 hsa-miR-6858-5p 1 0 0
chr3:196935968|196936126 hsa-miR-939-5p 1 0 0
chr3:196935968|196936126 hsa-miR-365a-5p 1 0 0
chr3:196935968|196936126 hsa-miR-30c-1-3p 1 0 0
chr3:196935968|196936126 hsa-miR-6855-5p 1 0 0
chr3:196935968|196936126 hsa-miR-5591-5p 1 0 0
chr3:196935968|196936126 hsa-miR-10397-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:196935968|196936126
ORF Type ORF1
Protein Length 47
Nucleotide Length 144
Protein Sequence MSNIPSSSSLLKPSPFPTSLKMKRINLLVLMSRQCFHCLLIFYPISY
Nucleotide Sequence CTGTCAAACATTCCCTCTTCAAGCTCCCTTTTAAAACCCAGTCCATTCCCAACATCACTGAAAATGAAAAGAATAAACTTGCTGGTCCTCATGTCAAGGCAGTGTTTTCATTGTCTCTTGATATTTTATCCCATTTCCTATTGA
CircID chr3:196935968|196936126
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MRTSKFILFIFSDVGNGLGFKRELEEGMFDSHR
Nucleotide Sequence ATGAGGACCAGCAAGTTTATTCTTTTCATTTTCAGTGATGTTGGGAATGGACTGGGTTTTAAAAGGGAGCTTGAAGAGGGAATGTTTGACAGTCACAGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab