CircRNA Information

General Information
circRNA Basic Information
CircID chr3:197511971|197512110
Strand +
CircType exon
Host Gene ENSG00000161267.10;
Algorism CIRI2;
Sequence GGCAAGAAGTACTTTGATGAAAAGATCGCCAAGATGGAGACCTACTGCAGCAGTGGCTCCACAGACACGTCCCCTGTCATCGATGCTGTCACACACGCCCTGACCGCCACCACCCCCTACACCCGCTACCACCCCATGGA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:197511971|197512110 hsa-miR-187-5p 0 0 1
chr3:197511971|197512110 hsa-miR-187-3p 0 0 1
chr3:197511971|197512110 hsa-miR-136-5p 0 0 1
chr3:197511971|197512110 hsa-miR-136-3p 0 0 1
chr3:197511971|197512110 hsa-miR-520g-5p 0 0 1
chr3:197511971|197512110 hsa-miR-520g-3p 0 0 1
chr3:197511971|197512110 hsa-miR-520h 0 0 1
chr3:197511971|197512110 hsa-miR-608 1 1 1
chr3:197511971|197512110 hsa-miR-548k 0 0 1
chr3:197511971|197512110 hsa-miR-1293 1 1 1
chr3:197511971|197512110 hsa-miR-342-5p 0 0 1
chr3:197511971|197512110 hsa-miR-542-3p 0 1 1
chr3:197511971|197512110 hsa-miR-1268 0 0 1
chr3:197511971|197512110 hsa-miR-886-3p 0 0 1
chr3:197511971|197512110 hsa-miR-1268a 1 1 0
chr3:197511971|197512110 hsa-miR-1193 1 0 0
chr3:197511971|197512110 hsa-miR-4270 1 0 0
chr3:197511971|197512110 hsa-miR-3621 1 0 0
chr3:197511971|197512110 hsa-miR-3936 1 0 0
chr3:197511971|197512110 hsa-miR-1268b 1 1 0
chr3:197511971|197512110 hsa-miR-4466 1 0 0
chr3:197511971|197512110 hsa-miR-4467 1 0 0
chr3:197511971|197512110 hsa-miR-4483 0 1 0
chr3:197511971|197512110 hsa-miR-4488 1 0 0
chr3:197511971|197512110 hsa-miR-4507 1 0 0
chr3:197511971|197512110 hsa-miR-1587 1 0 0
chr3:197511971|197512110 hsa-miR-4651 1 1 0
chr3:197511971|197512110 hsa-miR-4710 1 0 0
chr3:197511971|197512110 hsa-miR-5572 1 0 0
chr3:197511971|197512110 hsa-miR-6085 1 0 0
chr3:197511971|197512110 hsa-miR-6134 1 0 0
chr3:197511971|197512110 hsa-miR-6745 1 0 0
chr3:197511971|197512110 hsa-miR-7704 1 0 0
chr3:197511971|197512110 hsa-miR-8072 1 0 0
chr3:197511971|197512110 hsa-miR-12128 1 0 0
chr3:197511971|197512110 hsa-miR-138-5p 1 0 0
chr3:197511971|197512110 hsa-miR-323a-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6747-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6825-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6799-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6728-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6804-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6515-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6880-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6867-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6890-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6727-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6759-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6742-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6748-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6772-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6796-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6732-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6805-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6782-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6786-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6835-5p 1 0 0
chr3:197511971|197512110 hsa-miR-885-3p 1 0 0
chr3:197511971|197512110 hsa-miR-3127-5p 1 1 0
chr3:197511971|197512110 hsa-miR-4787-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6824-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6789-5p 1 0 0
chr3:197511971|197512110 hsa-miR-3162-5p 1 0 0
chr3:197511971|197512110 hsa-miR-5010-5p 1 0 0
chr3:197511971|197512110 hsa-miR-3191-3p 0 1 0
chr3:197511971|197512110 hsa-miR-10400-5p 1 0 0
chr3:197511971|197512110 hsa-miR-1233-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6769b-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6778-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6787-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6812-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6775-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6737-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6752-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6756-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6803-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6813-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6815-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6819-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6842-5p 1 1 0
chr3:197511971|197512110 hsa-miR-6851-5p 1 0 0
chr3:197511971|197512110 hsa-miR-7110-5p 1 1 0
chr3:197511971|197512110 hsa-miR-10401-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6722-3p 1 0 0
chr3:197511971|197512110 hsa-miR-6751-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6763-5p 1 0 0
chr3:197511971|197512110 hsa-miR-7111-5p 1 0 0
chr3:197511971|197512110 hsa-miR-3620-5p 1 0 0
chr3:197511971|197512110 hsa-miR-1237-5p 1 0 0
chr3:197511971|197512110 hsa-miR-4745-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6794-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6846-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6848-5p 1 0 0
chr3:197511971|197512110 hsa-miR-1266-5p 1 0 0
chr3:197511971|197512110 hsa-miR-3940-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6855-5p 1 0 0
chr3:197511971|197512110 hsa-miR-324-3p 0 1 0
chr3:197511971|197512110 hsa-miR-4472 1 0 0
chr3:197511971|197512110 hsa-miR-6766-5p 1 0 0
chr3:197511971|197512110 hsa-miR-6791-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:197511971|197512110
ORF Type ORF1
Protein Length 35
Nucleotide Length 105
Protein Sequence METYCSSGSTDTSPVIDAVTHALTATTPYTRYHPM
Nucleotide Sequence ATGGAGACCTACTGCAGCAGTGGCTCCACAGACACGTCCCCTGTCATCGATGCTGTCACACACGCCCTGACCGCCACCACCCCCTACACCCGCTACCACCCCATG
CircID chr3:197511971|197512110
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MMKRSPRWRPTAAVAPQTRPLSSMLSHTP
Nucleotide Sequence TTGATGAAAAGATCGCCAAGATGGAGACCTACTGCAGCAGTGGCTCCACAGACACGTCCCCTGTCATCGATGCTGTCACACACGCCCTGA
CircID chr3:197511971|197512110
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MQQWLHRHVPCHRCCHTRPDRHHPLHPLPPHG
Nucleotide Sequence CTGCAGCAGTGGCTCCACAGACACGTCCCCTGTCATCGATGCTGTCACACACGCCCTGACCGCCACCACCCCCTACACCCGCTACCACCCCATGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab