CircRNA Information

General Information
circRNA Basic Information
CircID chr3:30693357|30693521
Strand +
CircType exon
Host Gene ENSG00000163513.16;
Algorism CIRI2;
Sequence CTTCCACCATCCAAACAGAGCTGATATTCTCACTACCAGTCCCTCTCTAATATTCCTATTTGGCTGAAAATAAGTAGCTTCAAAAAGTTTTAAAAAAGAGATTACTTGCAGCATTAACACTTCTTTGTTGATTAACAAGTTTCCTATGGAGTTTTAAAGCTCATA
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:30693357|30693521 hsa-miR-216a-5p 0 0 1
chr3:30693357|30693521 hsa-miR-216a-3p 0 0 1
chr3:30693357|30693521 hsa-miR-155-5p 0 0 1
chr3:30693357|30693521 hsa-miR-155-3p 0 0 1
chr3:30693357|30693521 hsa-miR-569 0 0 1
chr3:30693357|30693521 hsa-miR-580-5p 0 0 1
chr3:30693357|30693521 hsa-miR-580-3p 0 0 1
chr3:30693357|30693521 hsa-miR-216b-5p 0 0 1
chr3:30693357|30693521 hsa-miR-216b-3p 0 0 1
chr3:30693357|30693521 hsa-miR-921 0 0 1
chr3:30693357|30693521 hsa-miR-548e-5p 0 0 1
chr3:30693357|30693521 hsa-miR-548e-3p 0 0 1
chr3:30693357|30693521 hsa-miR-1303 0 0 1
chr3:30693357|30693521 hsa-miR-127-5p 0 0 1
chr3:30693357|30693521 hsa-miR-556-5p 0 0 1
chr3:30693357|30693521 hsa-miR-548a-3p 0 0 1
chr3:30693357|30693521 hsa-miR-548f 0 0 1
chr3:30693357|30693521 hsa-miR-608 1 0 0
chr3:30693357|30693521 hsa-miR-760 1 0 0
chr3:30693357|30693521 hsa-miR-2861 1 0 0
chr3:30693357|30693521 hsa-miR-4660 1 0 0
chr3:30693357|30693521 hsa-miR-4710 1 0 0
chr3:30693357|30693521 hsa-miR-6073 1 1 0
chr3:30693357|30693521 hsa-miR-6085 1 0 0
chr3:30693357|30693521 hsa-miR-6127 1 0 0
chr3:30693357|30693521 hsa-miR-8052 1 1 0
chr3:30693357|30693521 hsa-miR-9986 1 0 0
chr3:30693357|30693521 hsa-miR-8071 1 0 0
chr3:30693357|30693521 hsa-miR-185-3p 1 0 0
chr3:30693357|30693521 hsa-miR-6760-5p 1 0 0
chr3:30693357|30693521 hsa-miR-7855-5p 1 0 0
chr3:30693357|30693521 hsa-miR-4691-3p 1 0 0
chr3:30693357|30693521 hsa-miR-3074-3p 0 1 0
chr3:30693357|30693521 hsa-miR-6834-5p 1 0 0
chr3:30693357|30693521 hsa-miR-4446-3p 1 0 0
chr3:30693357|30693521 hsa-miR-149-3p 1 0 0
chr3:30693357|30693521 hsa-miR-3162-5p 1 0 0
chr3:30693357|30693521 hsa-miR-7156-3p 1 0 0
chr3:30693357|30693521 hsa-miR-423-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6826-5p 1 0 0
chr3:30693357|30693521 hsa-miR-4652-5p 1 0 0
chr3:30693357|30693521 hsa-miR-3065-5p 0 1 0
chr3:30693357|30693521 hsa-miR-5001-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6754-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6813-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6751-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6779-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6780a-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6797-5p 1 0 0
chr3:30693357|30693521 hsa-miR-4728-5p 1 0 0
chr3:30693357|30693521 hsa-miR-10526-3p 1 0 0
chr3:30693357|30693521 hsa-miR-6794-5p 1 1 0
chr3:30693357|30693521 hsa-miR-6883-5p 1 0 0
chr3:30693357|30693521 hsa-miR-3199 1 1 0
chr3:30693357|30693521 hsa-miR-6758-5p 1 1 0
chr3:30693357|30693521 hsa-miR-6856-5p 1 1 0
chr3:30693357|30693521 hsa-miR-4665-5p 1 0 0
chr3:30693357|30693521 hsa-miR-3679-5p 1 0 0
chr3:30693357|30693521 hsa-miR-6785-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:30693357|30693521
ORF Type ORF1
Protein Length 46
Nucleotide Length 138
Protein Sequence MLINKEVLMLQVISFLKLFEATYFQPNRNIREGLVVRISALFGWWK
Nucleotide Sequence TTGTTAATCAACAAAGAAGTGTTAATGCTGCAAGTAATCTCTTTTTTAAAACTTTTTGAAGCTACTTATTTTCAGCCAAATAGGAATATTAGAGAGGGACTGGTAGTGAGAATATCAGCTCTGTTTGGATGGTGGAAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab