CircRNA Information

General Information
circRNA Basic Information
CircID chr3:32474194|32474438
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTCTGCACGTGGTATAGCCTCTGGATCCTTGCCTAGCCACCTGTTGCCCTCCTTCTCTCATCTGAAGTCAGAGCATTTAAAATGCCCAGAAAGATTGTTCCACTAGAAGCAGAATGGGACCTGCTGTTGGCACTGGACAAACCCATGTCAACCCATTGCTTTCCCCTTGGAATCCTCTTAAGTCAAGTTAAATCTCAGGTTTATGTGGGCAACAGAGAAAGAAACCAGCTGTTAATAAAGCCAGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:32474194|32474438 hsa-miR-198 0 0 1
chr3:32474194|32474438 hsa-miR-214-5p 0 0 1
chr3:32474194|32474438 hsa-miR-214-3p 0 0 1
chr3:32474194|32474438 hsa-miR-345-5p 0 0 1
chr3:32474194|32474438 hsa-miR-345-3p 0 0 1
chr3:32474194|32474438 hsa-miR-489-5p 0 0 1
chr3:32474194|32474438 hsa-miR-489-3p 0 0 1
chr3:32474194|32474438 hsa-miR-552-5p 0 0 1
chr3:32474194|32474438 hsa-miR-552-3p 0 0 1
chr3:32474194|32474438 hsa-miR-563 0 0 1
chr3:32474194|32474438 hsa-miR-612 1 1 1
chr3:32474194|32474438 hsa-miR-617 0 0 1
chr3:32474194|32474438 hsa-miR-629-5p 0 0 1
chr3:32474194|32474438 hsa-miR-629-3p 0 0 1
chr3:32474194|32474438 hsa-miR-1267 0 0 1
chr3:32474194|32474438 hsa-miR-1825 0 0 1
chr3:32474194|32474438 hsa-miR-199a-5p 0 0 1
chr3:32474194|32474438 hsa-miR-525-5p 0 1 1
chr3:32474194|32474438 hsa-miR-1207-3p 0 0 1
chr3:32474194|32474438 hsa-miR-199b-5p 0 0 1
chr3:32474194|32474438 hsa-miR-520a-5p 0 1 1
chr3:32474194|32474438 hsa-miR-1308 0 0 1
chr3:32474194|32474438 hsa-miR-1285 0 0 1
chr3:32474194|32474438 hsa-miR-658 1 0 0
chr3:32474194|32474438 hsa-miR-762 1 0 0
chr3:32474194|32474438 hsa-miR-765 1 0 0
chr3:32474194|32474438 hsa-miR-3141 1 0 0
chr3:32474194|32474438 hsa-miR-3153 0 1 0
chr3:32474194|32474438 hsa-miR-3154 1 0 0
chr3:32474194|32474438 hsa-miR-1193 1 0 0
chr3:32474194|32474438 hsa-miR-4476 1 0 0
chr3:32474194|32474438 hsa-miR-4505 1 0 0
chr3:32474194|32474438 hsa-miR-4507 0 1 0
chr3:32474194|32474438 hsa-miR-4510 1 0 0
chr3:32474194|32474438 hsa-miR-4516 1 0 0
chr3:32474194|32474438 hsa-miR-4533 1 0 0
chr3:32474194|32474438 hsa-miR-4534 1 0 0
chr3:32474194|32474438 hsa-miR-4721 1 0 0
chr3:32474194|32474438 hsa-miR-4739 1 0 0
chr3:32474194|32474438 hsa-miR-4779 1 1 0
chr3:32474194|32474438 hsa-miR-5087 0 1 0
chr3:32474194|32474438 hsa-miR-5691 0 1 0
chr3:32474194|32474438 hsa-miR-5703 1 0 0
chr3:32474194|32474438 hsa-miR-5787 1 0 0
chr3:32474194|32474438 hsa-miR-6124 1 0 0
chr3:32474194|32474438 hsa-miR-6127 1 0 0
chr3:32474194|32474438 hsa-miR-6133 1 0 0
chr3:32474194|32474438 hsa-miR-6165 1 0 0
chr3:32474194|32474438 hsa-miR-6860 0 1 0
chr3:32474194|32474438 hsa-miR-12118 1 0 0
chr3:32474194|32474438 hsa-miR-29b-1-5p 0 1 0
chr3:32474194|32474438 hsa-miR-105-5p 0 1 0
chr3:32474194|32474438 hsa-miR-504-3p 1 0 0
chr3:32474194|32474438 hsa-miR-6809-5p 0 1 0
chr3:32474194|32474438 hsa-miR-6894-5p 1 0 0
chr3:32474194|32474438 hsa-miR-205-3p 0 1 0
chr3:32474194|32474438 hsa-miR-6757-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6873-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6880-5p 1 0 0
chr3:32474194|32474438 hsa-miR-7847-3p 1 0 0
chr3:32474194|32474438 hsa-miR-4695-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6746-5p 1 0 0
chr3:32474194|32474438 hsa-miR-4722-5p 1 0 0
chr3:32474194|32474438 hsa-miR-7154-3p 1 0 0
chr3:32474194|32474438 hsa-miR-1301-3p 1 0 0
chr3:32474194|32474438 hsa-miR-593-5p 1 0 0
chr3:32474194|32474438 hsa-miR-3605-5p 1 0 0
chr3:32474194|32474438 hsa-miR-3151-5p 1 0 0
chr3:32474194|32474438 hsa-miR-1292-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6748-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6770-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6760-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6782-5p 1 0 0
chr3:32474194|32474438 hsa-miR-1226-5p 1 0 0
chr3:32474194|32474438 hsa-miR-185-5p 1 0 0
chr3:32474194|32474438 hsa-miR-877-5p 1 0 0
chr3:32474194|32474438 hsa-miR-149-3p 1 0 0
chr3:32474194|32474438 hsa-miR-3616-3p 1 0 0
chr3:32474194|32474438 hsa-miR-4661-3p 0 1 0
chr3:32474194|32474438 hsa-miR-130b-5p 0 1 0
chr3:32474194|32474438 hsa-miR-367-5p 0 1 0
chr3:32474194|32474438 hsa-miR-744-3p 0 1 0
chr3:32474194|32474438 hsa-miR-1233-5p 1 0 0
chr3:32474194|32474438 hsa-miR-4763-3p 1 0 0
chr3:32474194|32474438 hsa-miR-6778-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6865-5p 1 1 0
chr3:32474194|32474438 hsa-miR-6775-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6754-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6769a-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6815-5p 1 1 0
chr3:32474194|32474438 hsa-miR-6851-5p 1 0 0
chr3:32474194|32474438 hsa-miR-11181-3p 1 0 0
chr3:32474194|32474438 hsa-miR-1249-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6779-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6780a-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6788-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6797-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6808-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6879-5p 1 0 0
chr3:32474194|32474438 hsa-miR-4728-5p 1 0 0
chr3:32474194|32474438 hsa-miR-5196-5p 1 1 0
chr3:32474194|32474438 hsa-miR-10396b-5p 1 0 0
chr3:32474194|32474438 hsa-miR-10526-3p 1 0 0
chr3:32474194|32474438 hsa-miR-328-5p 1 1 0
chr3:32474194|32474438 hsa-miR-4632-5p 1 0 0
chr3:32474194|32474438 hsa-miR-4725-3p 1 0 0
chr3:32474194|32474438 hsa-miR-6735-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6794-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6858-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6883-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6885-5p 1 0 0
chr3:32474194|32474438 hsa-miR-3940-5p 0 1 0
chr3:32474194|32474438 hsa-miR-6758-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6856-5p 1 0 0
chr3:32474194|32474438 hsa-miR-3173-3p 1 1 0
chr3:32474194|32474438 hsa-miR-4747-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6876-5p 1 0 0
chr3:32474194|32474438 hsa-miR-6891-5p 1 1 0
chr3:32474194|32474438 hsa-miR-541-3p 1 0 0
chr3:32474194|32474438 hsa-miR-6785-5p 1 0 0
chr3:32474194|32474438 hsa-miR-9851-3p 1 0 0
chr3:32474194|32474438 hsa-miR-373-3p 0 1 0
chr3:32474194|32474438 hsa-miR-3619-5p 1 1 0
chr3:32474194|32474438 hsa-miR-6838-5p 1 0 0
chr3:32474194|32474438 hsa-miR-301a-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:32474194|32474438
ORF Type ORF1
Protein Length 54
Nucleotide Length 162
Protein Sequence MPRKIVPLEAEWDLLLALDKPMSTHCFPLGILLSQVKSQVYVGNRERNQLLIKP
Nucleotide Sequence ATGCCCAGAAAGATTGTTCCACTAGAAGCAGAATGGGACCTGCTGTTGGCACTGGACAAACCCATGTCAACCCATTGCTTTCCCCTTGGAATCCTCTTAAGTCAAGTTAAATCTCAGGTTTATGTGGGCAACAGAGAAAGAAACCAGCTGTTAATAAAGCCA
CircID chr3:32474194|32474438
ORF Type ORF2
Protein Length 25
Nucleotide Length 78
Protein Sequence MPSHLLPSFSHLKSEHLKCPERLFH
Nucleotide Sequence TTGCCTAGCCACCTGTTGCCCTCCTTCTCTCATCTGAAGTCAGAGCATTTAAAATGCCCAGAAAGATTGTTCCACTAG
CircID chr3:32474194|32474438
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MGPAVGTGQTHVNPLLSPWNPLKSS
Nucleotide Sequence ATGGGACCTGCTGTTGGCACTGGACAAACCCATGTCAACCCATTGCTTTCCCCTTGGAATCCTCTTAAGTCAAGTTAA
CircID chr3:32474194|32474438
ORF Type ORF4
Protein Length 37
Nucleotide Length 114
Protein Sequence MGLSSANSRSHSASSGTIFLGILNALTSDERRRATGG
Nucleotide Sequence ATGGGTTTGTCCAGTGCCAACAGCAGGTCCCATTCTGCTTCTAGTGGAACAATCTTTCTGGGCATTTTAAATGCTCTGACTTCAGATGAGAGAAGGAGGGCAACAGGTGGCTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab