CircRNA Information

General Information
circRNA Basic Information
CircID chr3:32703868|32704972
Strand +
CircType exon
Host Gene ENSG00000182973.18;
Algorism find_circ;CIRI2;DCC;
Sequence ATCAGGGAGCAGAGAAACATGAAGGCACAGGTCAGTCCTCTGGGATCACTGATCAAGAGAAGGAGTTATCCACCAATGCTTTCCAAGCTTTCACATCTGGAAATTATGATGCCTGTCTACAACACCTTGCCTGTCTACAAGATATAAACAAAGATGATTATAAAATAATTTTGAATACAGCAGTAGCTGAGTTTTTTAAAAGTAACCAAACAACAACAGATAATTTGAGACAAACACTTAACCAGCTGAAGAATCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:32703868|32704972 hsa-miR-23a-5p 0 0 1
chr3:32703868|32704972 hsa-miR-23a-3p 0 0 1
chr3:32703868|32704972 hsa-miR-23b-5p 0 0 1
chr3:32703868|32704972 hsa-miR-23b-3p 0 0 1
chr3:32703868|32704972 hsa-miR-340-5p 0 0 1
chr3:32703868|32704972 hsa-miR-340-3p 0 0 1
chr3:32703868|32704972 hsa-miR-326 0 0 1
chr3:32703868|32704972 hsa-miR-335-5p 0 0 1
chr3:32703868|32704972 hsa-miR-335-3p 0 0 1
chr3:32703868|32704972 hsa-miR-494-5p 0 0 1
chr3:32703868|32704972 hsa-miR-494-3p 0 0 1
chr3:32703868|32704972 hsa-miR-506-5p 0 0 1
chr3:32703868|32704972 hsa-miR-506-3p 0 0 1
chr3:32703868|32704972 hsa-miR-559 0 0 1
chr3:32703868|32704972 hsa-miR-638 0 0 1
chr3:32703868|32704972 hsa-miR-934 0 0 1
chr3:32703868|32704972 hsa-miR-548j-5p 0 0 1
chr3:32703868|32704972 hsa-miR-548j-3p 0 0 1
chr3:32703868|32704972 hsa-miR-1299 0 0 1
chr3:32703868|32704972 hsa-miR-548n 0 0 1
chr3:32703868|32704972 hsa-miR-1272 0 0 1
chr3:32703868|32704972 hsa-miR-1322 0 0 1
chr3:32703868|32704972 hsa-miR-1283 0 0 1
chr3:32703868|32704972 hsa-miR-875-3p 0 0 1
chr3:32703868|32704972 hsa-miR-769-3p 0 0 1
chr3:32703868|32704972 hsa-miR-330-5p 0 0 1
chr3:32703868|32704972 hsa-miR-455-3p 0 0 1
chr3:32703868|32704972 hsa-miR-450b-3p 0 1 1
chr3:32703868|32704972 hsa-miR-548b-5p 0 0 1
chr3:32703868|32704972 hsa-miR-548d-5p 0 0 1
chr3:32703868|32704972 hsa-miR-590-3p 0 0 1
chr3:32703868|32704972 hsa-miR-548c-5p 0 0 1
chr3:32703868|32704972 hsa-miR-548a-5p 0 0 1
chr3:32703868|32704972 hsa-miR-548i 0 0 1
chr3:32703868|32704972 hsa-miR-124 0 0 1
chr3:32703868|32704972 hsa-miR-548h 0 0 1
chr3:32703868|32704972 hsa-miR-4269 1 0 0
chr3:32703868|32704972 hsa-miR-4270 1 1 0
chr3:32703868|32704972 hsa-miR-3909 0 1 0
chr3:32703868|32704972 hsa-miR-3919 0 1 0
chr3:32703868|32704972 hsa-miR-4441 0 1 0
chr3:32703868|32704972 hsa-miR-4647 1 0 0
chr3:32703868|32704972 hsa-miR-6090 1 0 0
chr3:32703868|32704972 hsa-miR-12128 1 1 0
chr3:32703868|32704972 hsa-miR-214-5p 1 1 0
chr3:32703868|32704972 hsa-miR-8069 1 0 0
chr3:32703868|32704972 hsa-miR-101-5p 0 1 0
chr3:32703868|32704972 hsa-miR-1915-5p 0 1 0
chr3:32703868|32704972 hsa-miR-2467-3p 1 0 0
chr3:32703868|32704972 hsa-miR-1226-5p 1 0 0
chr3:32703868|32704972 hsa-miR-3162-5p 1 0 0
chr3:32703868|32704972 hsa-miR-124-3p 0 1 0
chr3:32703868|32704972 hsa-miR-4728-5p 1 0 0
chr3:32703868|32704972 hsa-miR-6735-5p 1 0 0
chr3:32703868|32704972 hsa-miR-6777-5p 1 0 0
chr3:32703868|32704972 hsa-miR-6848-5p 1 0 0
chr3:32703868|32704972 hsa-miR-6889-5p 1 0 0
chr3:32703868|32704972 hsa-miR-939-5p 1 0 0
chr3:32703868|32704972 hsa-miR-6856-5p 1 0 0
chr3:32703868|32704972 hsa-miR-4716-3p 1 0 0
chr3:32703868|32704972 hsa-miR-6859-5p 1 1 0
chr3:32703868|32704972 hsa-miR-619-5p 0 1 0
chr3:32703868|32704972 hsa-miR-6506-5p 0 1 0
chr3:32703868|32704972 hsa-miR-181b-2-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:32703868|32704972
ORF Type ORF1
Protein Length 43
Nucleotide Length 129
Protein Sequence MKAQVSPLGSLIKRRSYPPMLSKLSHLEIMMPVYNTLPVYKI*
Nucleotide Sequence ATGAAGGCACAGGTCAGTCCTCTGGGATCACTGATCAAGAGAAGGAGTTATCCACCAATGCTTTCCAAGCTTTCACATCTGGAAATTATGATGCCTGTCTACAACACCTTGCCTGTCTACAAGATATAA
CircID chr3:32703868|32704972
ORF Type ORF1
Protein Length 40
Nucleotide Length 123
Protein Sequence LILQLVKCLSQIICCCLVTFKKLSYCCIQNYFIIIFVYIL
Nucleotide Sequence CTGATTCTTCAGCTGGTTAAGTGTTTGTCTCAAATTATCTGTTGTTGTTTGGTTACTTTTAAAAAACTCAGCTACTGCTGTATTCAAAATTATTTTATAATCATCTTTGTTTATATCTTGTAG
CircID chr3:32703868|32704972
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MLYSKLFYNHLCLYLVDRQGVVDRHHNFQM
Nucleotide Sequence CTGCTGTATTCAAAATTATTTTATAATCATCTTTGTTTATATCTTGTAGACAGGCAAGGTGTTGTAGACAGGCATCATAATTTCCAGATGTGA
CircID chr3:32703868|32704972
ORF Type ORF3
Protein Length 42
Nucleotide Length 129
Protein Sequence MKAQVSPLGSLIKRRSYPPMLSKLSHLEIMMPVYNTLPVYKI
Nucleotide Sequence ATGAAGGCACAGGTCAGTCCTCTGGGATCACTGATCAAGAGAAGGAGTTATCCACCAATGCTTTCCAAGCTTTCACATCTGGAAATTATGATGCCTGTCTACAACACCTTGCCTGTCTACAAGATATAA
CircID chr3:32703868|32704972
ORF Type ORF4
Protein Length 29
Nucleotide Length 87
Protein Sequence MNTAVAEFFKSNQTTTDNLRQTLNQLKNQ
Nucleotide Sequence TTGAATACAGCAGTAGCTGAGTTTTTTAAAAGTAACCAAACAACAACAGATAATTTGAGACAAACACTTAACCAGCTGAAGAATCAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:32703868|32704972 SLBP 1 0 1
chr3:32703868|32704972 ELAVL1 5 5 1
chr3:32703868|32704972 FMR1 1 0 1
chr3:32703868|32704972 CPSF4 2 0 1
chr3:32703868|32704972 FUS 0 1 0
chr3:32703868|32704972 NOP58 2 0 1
chr3:32703868|32704972 U2AF2 16 9 0
chr3:32703868|32704972 DDX54 0 1 2
chr3:32703868|32704972 RBM10 2 1 0
chr3:32703868|32704972 HNRNPM 0 3 0
chr3:32703868|32704972 PTBP1 2 0 1
chr3:32703868|32704972 HNRNPC 23 3 4
chr3:32703868|32704972 TRA2A 2 0 0
chr3:32703868|32704972 HNRNPA1 4 0 0
chr3:32703868|32704972 DDX3X 1 0 1
chr3:32703868|32704972 TIAL1 0 1 0
chr3:32703868|32704972 ACIN1 0 0 1
chr3:32703868|32704972 RANGAP1 1 0 0
chr3:32703868|32704972 IGF2BP3 0 0 2
chr3:32703868|32704972 IGF2BP2 0 1 0
chr3:32703868|32704972 TARDBP 1 0 0
chr3:32703868|32704972 BUD13 0 0 2
chr3:32703868|32704972 CSTF2T 1 3 0
chr3:32703868|32704972 CSTF2 2 3 0
chr3:32703868|32704972 ILF3 0 1 0
chr3:32703868|32704972 WDR33 1 2 0
chr3:32703868|32704972 FBL 1 0 2
chr3:32703868|32704972 EWSR1 1 0 0
chr3:32703868|32704972 EIF4A3 2 2 5
chr3:32703868|32704972 AGO2 0 0 3
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab