CircRNA Information

General Information
circRNA Basic Information
CircID chr3:37319063|37321886
Strand +
CircType exon
Host Gene ENSG00000144674.16;
Algorism CIRI2;find_circ;DCC;
Sequence AAATCCTCAGAAGAACAAATTGCTAAGCTACAGAAGCTTCATGAAAAGGAGCTGGCCAGAAAAGAGCAGGAACTGACCAAGAAGCTTCAGACCCGAGAAAGGGAATTTCAGGAACAAATGAAAGTAGCTCTTGAAAAGAGTCAATCAGAATATTTGAAGATCAGCCAAGAAAAAGAACAGCAAGAATCTTTGGCCCTAGAAGAGTTAGAGTTGCAGAAAAAAGCAATCCTCACAGAAAGTGAAAATAAACTTCGGGACCTTCAGCAAGAAGCAGAGACTTACAGAACT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:37319063|37321886 hsa-miR-103a-2-5p 0 1 1
chr3:37319063|37321886 hsa-miR-26b-3p 0 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr3:37319063|37321886
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MKVALEKSQSEYLKISQEKEQQESLALEELELQKKAILTESENKLRDLQQEAETYRT
Nucleotide Sequence ATGAAAGTAGCTCTTGAAAAGAGTCAATCAGAATATTTGAAGATCAGCCAAGAAAAAGAACAGCAAGAATCTTTGGCCCTAGAAGAGTTAGAGTTGCAGAAAAAAGCAATCCTCACAGAAAGTGAAAATAAACTTCGGGACCTTCAGCAAGAAGCAGAGACTTACAGAACT

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:37319063|37321886 U2AF2 12 9 0
chr3:37319063|37321886 MOV10 1 1 0
chr3:37319063|37321886 ELAVL1 8 4 2
chr3:37319063|37321886 CELF2 1 1 0
chr3:37319063|37321886 CPSF7 0 0 1
chr3:37319063|37321886 UPF1 1 0 0
chr3:37319063|37321886 TAF15 1 0 0
chr3:37319063|37321886 FMR1 0 0 3
chr3:37319063|37321886 NUDT21 0 2 0
chr3:37319063|37321886 CPSF3 1 0 0
chr3:37319063|37321886 RBM15B 0 1 0
chr3:37319063|37321886 QKI 3 0 0
chr3:37319063|37321886 SRSF1 1 0 0
chr3:37319063|37321886 NOP58 1 1 2
chr3:37319063|37321886 NOP56 1 0 0
chr3:37319063|37321886 DDX54 3 0 10
chr3:37319063|37321886 SF3A3 2 0 0
chr3:37319063|37321886 FIP1L1 1 2 0
chr3:37319063|37321886 PTBP1 22 0 0
chr3:37319063|37321886 HNRNPC 35 30 2
chr3:37319063|37321886 SUGP2 6 0 0
chr3:37319063|37321886 TRA2A 0 0 6
chr3:37319063|37321886 ZNF184 1 0 0
chr3:37319063|37321886 HNRNPA1 6 3 0
chr3:37319063|37321886 ACIN1 1 0 4
chr3:37319063|37321886 LIN28B 1 1 0
chr3:37319063|37321886 IGF2BP2 0 0 7
chr3:37319063|37321886 TARDBP 3 1 0
chr3:37319063|37321886 BUD13 0 0 2
chr3:37319063|37321886 RBFOX2 3 1 0
chr3:37319063|37321886 PRPF8 0 1 0
chr3:37319063|37321886 CSTF2T 5 2 2
chr3:37319063|37321886 CSTF2 1 4 0
chr3:37319063|37321886 WDR33 1 0 0
chr3:37319063|37321886 FBL 0 0 3
chr3:37319063|37321886 EIF4A3 1 2 4
chr3:37319063|37321886 AGO2 1 0 1