CircRNA Information

General Information
circRNA Basic Information
CircID chr3:38084158|38088388
Strand +
CircType exon
Host Gene ENSG00000008226.19;
Algorism find_circ;CIRI2;DCC;
Sequence ATGGTAATTGCGCTGCAGAACACCACCACGACCAGCCGCTACCTGCGAGTCCTCCCGCCTTCCACGCCATACTTCGCTCTGGGACTGGGGATGTTCCCAGGAAAAGGTGGAATGGTGGCTCCTGGAATGACCTGCCAGTACATTGTCCAGTTTTTTCCCGACTGCCTTGGGGATTTTGATGATTTTATTTTAGTGGAGACCCAGTCAGCCCACACACTTCTGATCCCCCTGCAGGCCCGGAGGCCGCCCCCCGTGCTGACATTGTCACCGGTGTTGGACTGTGGTTACTGCCTCATTGGGGGAGTCAAGATGACCAGATTCATCTGCAAAAATGTGGGTTTCAGTGTTGGCAGGTTCTGCATTATGCCCAAAACAAGCTGGCCACCACTAAGTTTCAAGGCCATTGCAACCGTCGGCTTTGTTGAACAACCTCCTTTTGGAATCCTGCCTTCGGTGTTTGAGCTGGCCCCGGGACATGCTATATTAGTGGAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:38084158|38088388 hsa-miR-638 1 1 1
chr3:38084158|38088388 hsa-miR-2861 1 1 1
chr3:38084158|38088388 hsa-miR-4321 1 1 1
chr3:38084158|38088388 hsa-miR-3665 1 1 1
chr3:38084158|38088388 hsa-miR-3945 1 1 1
chr3:38084158|38088388 hsa-miR-4440 1 1 1
chr3:38084158|38088388 hsa-miR-4449 1 1 1
chr3:38084158|38088388 hsa-miR-4450 1 1 1
chr3:38084158|38088388 hsa-miR-4467 1 1 1
chr3:38084158|38088388 hsa-miR-4497 1 1 1
chr3:38084158|38088388 hsa-miR-4508 1 1 1
chr3:38084158|38088388 hsa-miR-6131 1 1 1
chr3:38084158|38088388 hsa-miR-7150 1 1 1
chr3:38084158|38088388 hsa-miR-128-1-5p 1 1 1
chr3:38084158|38088388 hsa-miR-1247-3p 1 1 1
chr3:38084158|38088388 hsa-miR-4532 1 1 1
chr3:38084158|38088388 hsa-miR-323a-5p 1 1 1
chr3:38084158|38088388 hsa-miR-1273h-3p 1 1 1
chr3:38084158|38088388 hsa-miR-4433a-3p 1 1 1
chr3:38084158|38088388 hsa-miR-129-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6799-5p 1 1 1
chr3:38084158|38088388 hsa-miR-766-5p 1 1 1
chr3:38084158|38088388 hsa-miR-3192-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6746-5p 1 1 1
chr3:38084158|38088388 hsa-miR-4722-5p 1 1 1
chr3:38084158|38088388 hsa-miR-4459 1 1 1
chr3:38084158|38088388 hsa-miR-3663-5p 1 1 1
chr3:38084158|38088388 hsa-miR-3180-3p 1 1 1
chr3:38084158|38088388 hsa-miR-6732-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6805-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6798-5p 1 1 1
chr3:38084158|38088388 hsa-miR-3194-5p 1 1 1
chr3:38084158|38088388 hsa-miR-4436b-5p 1 1 1
chr3:38084158|38088388 hsa-miR-1343-3p 1 1 1
chr3:38084158|38088388 hsa-miR-6852-5p 1 1 1
chr3:38084158|38088388 hsa-miR-939-3p 1 1 1
chr3:38084158|38088388 hsa-miR-6784-5p 1 1 1
chr3:38084158|38088388 hsa-miR-4640-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6757-3p 1 1 1
chr3:38084158|38088388 hsa-miR-1908-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6771-5p 1 1 1
chr3:38084158|38088388 hsa-miR-6749-5p 1 1 1
chr3:38084158|38088388 hsa-miR-4787-5p 1 1 1
chr3:38084158|38088388 hsa-miR-1199-3p 1 1 1
chr3:38084158|38088388 hsa-miR-1298-3p 1 1 1
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:38084158|38088388 U2AF2 0 1 0
chr3:38084158|38088388 ELAVL1 1 4 0
chr3:38084158|38088388 SF3B4 0 0 1
chr3:38084158|38088388 SF3B1 1 0 0
chr3:38084158|38088388 PRPF8 2 0 1
chr3:38084158|38088388 RPS3 2 0 0
chr3:38084158|38088388 TAF15 0 1 0
chr3:38084158|38088388 NUDT21 1 1 0
chr3:38084158|38088388 CPSF3 1 0 0
chr3:38084158|38088388 SUB1 1 0 1
chr3:38084158|38088388 NOP56 1 0 0
chr3:38084158|38088388 DDX55 0 0 1
chr3:38084158|38088388 GRWD1 1 0 2
chr3:38084158|38088388 PTBP1 1 0 0
chr3:38084158|38088388 HNRNPC 8 9 2
chr3:38084158|38088388 NOL12 1 0 0
chr3:38084158|38088388 SMNDC1 0 0 1
chr3:38084158|38088388 TBRG4 2 2 0
chr3:38084158|38088388 UCHL5 0 0 2
chr3:38084158|38088388 TARDBP 3 0 1
chr3:38084158|38088388 RBFOX2 0 0 1
chr3:38084158|38088388 DDX24 0 0 3
chr3:38084158|38088388 CSTF2T 0 1 0
chr3:38084158|38088388 CSTF2 1 0 0
chr3:38084158|38088388 RBM22 2 0 0
chr3:38084158|38088388 ILF3 1 0 0
chr3:38084158|38088388 SUPV3L1 0 1 0
chr3:38084158|38088388 PPIG 2 0 3
chr3:38084158|38088388 ATXN2 0 0 1
chr3:38084158|38088388 EIF4A3 0 0 1
chr3:38084158|38088388 FBL 1 0 0
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab