CircRNA Information

General Information
circRNA Basic Information
CircID chr3:38141922|38142048
Strand -
CircType exon
Host Gene ENSG00000172936.11;
Algorism CIRI2;
Sequence CTCTCATCTGCATCTTTCACACCTCCCAGCTTCTGCCCAACCTTCAGCAGTGACAAGTCCCCAAGAGACTCGCCTGAGCAGCTTGGGCTGCTTTTCATTTCCACCTGTCAGGATGCCTGTGGTCATG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:38141922|38142048 hsa-miR-493-5p 0 0 1
chr3:38141922|38142048 hsa-miR-493-3p 0 0 1
chr3:38141922|38142048 hsa-miR-552-5p 0 0 1
chr3:38141922|38142048 hsa-miR-552-3p 0 0 1
chr3:38141922|38142048 hsa-miR-635 0 0 1
chr3:38141922|38142048 hsa-miR-668-5p 0 0 1
chr3:38141922|38142048 hsa-miR-668-3p 0 0 1
chr3:38141922|38142048 hsa-miR-298 1 1 1
chr3:38141922|38142048 hsa-miR-767-3p 0 0 1
chr3:38141922|38142048 hsa-miR-140-3p 0 0 1
chr3:38141922|38142048 hsa-miR-602 1 0 0
chr3:38141922|38142048 hsa-miR-612 1 0 0
chr3:38141922|38142048 hsa-miR-637 1 0 0
chr3:38141922|38142048 hsa-miR-920 1 0 0
chr3:38141922|38142048 hsa-miR-1321 1 0 0
chr3:38141922|38142048 hsa-miR-3132 1 0 0
chr3:38141922|38142048 hsa-miR-3147 1 1 0
chr3:38141922|38142048 hsa-miR-320e 1 1 0
chr3:38141922|38142048 hsa-miR-3646 0 1 0
chr3:38141922|38142048 hsa-miR-3650 1 0 0
chr3:38141922|38142048 hsa-miR-3652 1 0 0
chr3:38141922|38142048 hsa-miR-3655 0 1 0
chr3:38141922|38142048 hsa-miR-3665 1 0 0
chr3:38141922|38142048 hsa-miR-4429 1 0 0
chr3:38141922|38142048 hsa-miR-4450 1 0 0
chr3:38141922|38142048 hsa-miR-4468 1 0 0
chr3:38141922|38142048 hsa-miR-3689c 1 1 0
chr3:38141922|38142048 hsa-miR-4487 1 0 0
chr3:38141922|38142048 hsa-miR-4505 1 0 0
chr3:38141922|38142048 hsa-miR-2392 1 0 0
chr3:38141922|38142048 hsa-miR-4507 1 0 0
chr3:38141922|38142048 hsa-miR-4525 1 0 0
chr3:38141922|38142048 hsa-miR-4651 1 0 0
chr3:38141922|38142048 hsa-miR-4675 1 0 0
chr3:38141922|38142048 hsa-miR-4706 1 0 0
chr3:38141922|38142048 hsa-miR-5093 0 1 0
chr3:38141922|38142048 hsa-miR-5698 1 0 0
chr3:38141922|38142048 hsa-miR-5787 1 0 0
chr3:38141922|38142048 hsa-miR-6086 1 0 0
chr3:38141922|38142048 hsa-miR-6134 1 0 0
chr3:38141922|38142048 hsa-miR-6165 1 0 0
chr3:38141922|38142048 hsa-miR-6860 1 0 0
chr3:38141922|38142048 hsa-miR-8089 1 0 0
chr3:38141922|38142048 hsa-miR-9718 1 0 0
chr3:38141922|38142048 hsa-miR-12114 0 1 0
chr3:38141922|38142048 hsa-miR-12115 0 1 0
chr3:38141922|38142048 hsa-miR-12119 1 0 0
chr3:38141922|38142048 hsa-miR-4731-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6747-5p 1 1 0
chr3:38141922|38142048 hsa-miR-3150a-3p 1 0 0
chr3:38141922|38142048 hsa-miR-6861-5p 1 0 0
chr3:38141922|38142048 hsa-miR-7106-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6825-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6894-5p 1 0 0
chr3:38141922|38142048 hsa-miR-125a-3p 1 1 0
chr3:38141922|38142048 hsa-miR-6854-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6799-5p 1 1 0
chr3:38141922|38142048 hsa-miR-6804-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6833-5p 0 1 0
chr3:38141922|38142048 hsa-miR-3934-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6515-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6089 1 0 0
chr3:38141922|38142048 hsa-miR-3192-5p 1 1 0
chr3:38141922|38142048 hsa-miR-6880-5p 1 1 0
chr3:38141922|38142048 hsa-miR-7160-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6721-5p 1 0 0
chr3:38141922|38142048 hsa-miR-197-5p 1 0 0
chr3:38141922|38142048 hsa-miR-8069 1 0 0
chr3:38141922|38142048 hsa-miR-5589-5p 1 0 0
chr3:38141922|38142048 hsa-miR-3180-3p 1 0 0
chr3:38141922|38142048 hsa-miR-6732-5p 1 0 0
chr3:38141922|38142048 hsa-miR-2467-3p 1 0 0
chr3:38141922|38142048 hsa-miR-6782-5p 1 0 0
chr3:38141922|38142048 hsa-miR-30b-3p 1 1 0
chr3:38141922|38142048 hsa-miR-7109-5p 1 0 0
chr3:38141922|38142048 hsa-miR-1229-5p 1 1 0
chr3:38141922|38142048 hsa-miR-885-3p 1 0 0
chr3:38141922|38142048 hsa-miR-1228-5p 1 1 0
chr3:38141922|38142048 hsa-miR-296-3p 1 1 0
chr3:38141922|38142048 hsa-miR-6823-5p 1 0 0
chr3:38141922|38142048 hsa-miR-485-5p 1 0 0
chr3:38141922|38142048 hsa-miR-7854-3p 1 0 0
chr3:38141922|38142048 hsa-miR-4787-5p 1 0 0
chr3:38141922|38142048 hsa-miR-149-3p 1 0 0
chr3:38141922|38142048 hsa-miR-6781-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6877-5p 1 0 0
chr3:38141922|38142048 hsa-miR-450a-2-3p 0 1 0
chr3:38141922|38142048 hsa-miR-616-3p 1 0 0
chr3:38141922|38142048 hsa-miR-4750-5p 1 0 0
chr3:38141922|38142048 hsa-miR-1207-5p 1 0 0
chr3:38141922|38142048 hsa-miR-1273h-5p 1 1 0
chr3:38141922|38142048 hsa-miR-3689b-3p 1 1 0
chr3:38141922|38142048 hsa-miR-6769b-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6778-5p 1 0 0
chr3:38141922|38142048 hsa-miR-3180 1 0 0
chr3:38141922|38142048 hsa-miR-6726-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6752-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6754-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6756-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6803-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6851-5p 1 0 0
chr3:38141922|38142048 hsa-miR-7110-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6751-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6763-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6774-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6779-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6780a-5p 1 1 0
chr3:38141922|38142048 hsa-miR-6808-5p 1 0 0
chr3:38141922|38142048 hsa-miR-4728-5p 1 0 0
chr3:38141922|38142048 hsa-miR-3689a-3p 1 1 0
chr3:38141922|38142048 hsa-miR-6735-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6846-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6848-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6883-5p 1 0 0
chr3:38141922|38142048 hsa-miR-3187-5p 1 0 0
chr3:38141922|38142048 hsa-miR-1910-3p 1 0 0
chr3:38141922|38142048 hsa-miR-365a-5p 1 1 0
chr3:38141922|38142048 hsa-miR-365b-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6511a-5p 1 0 0
chr3:38141922|38142048 hsa-miR-3940-5p 1 0 0
chr3:38141922|38142048 hsa-miR-7843-5p 1 0 0
chr3:38141922|38142048 hsa-miR-4646-5p 1 0 0
chr3:38141922|38142048 hsa-miR-4472 1 0 0
chr3:38141922|38142048 hsa-miR-6766-5p 1 0 0
chr3:38141922|38142048 hsa-miR-6785-5p 1 0 0
chr3:38141922|38142048 hsa-miR-3689d 1 1 0
chr3:38141922|38142048 hsa-miR-320a-3p 1 0 0
chr3:38141922|38142048 hsa-miR-320b 1 0 0
chr3:38141922|38142048 hsa-miR-320c 1 0 0
chr3:38141922|38142048 hsa-miR-6884-5p 1 0 0
chr3:38141922|38142048 hsa-miR-320d 1 0 0
chr3:38141922|38142048 hsa-miR-4690-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:38141922|38142048
ORF Type ORF1
Protein Length 40
Nucleotide Length 120
Protein Sequence MHLSHLPASAQPSAVTSPQETRLSSLGCFSFPPVRMPVVM
Nucleotide Sequence CTGCATCTTTCACACCTCCCAGCTTCTGCCCAACCTTCAGCAGTGACAAGTCCCCAAGAGACTCGCCTGAGCAGCTTGGGCTGCTTTTCATTTCCACCTGTCAGGATGCCTGTGGTCATG
CircID chr3:38141922|38142048
ORF Type ORF2
Protein Length 40
Nucleotide Length 123
Protein Sequence MTTGILTGGNEKQPKLLRRVSWGLVTAEGWAEAGRCERCR
Nucleotide Sequence ATGACCACAGGCATCCTGACAGGTGGAAATGAAAAGCAGCCCAAGCTGCTCAGGCGAGTCTCTTGGGGACTTGTCACTGCTGAAGGTTGGGCAGAAGCTGGGAGGTGTGAAAGATGCAGATGA
CircID chr3:38141922|38142048
ORF Type ORF3
Protein Length 32
Nucleotide Length 96
Protein Sequence MKSSPSCSGESLGDLSLLKVGQKLGGVKDADE
Nucleotide Sequence ATGAAAAGCAGCCCAAGCTGCTCAGGCGAGTCTCTTGGGGACTTGTCACTGCTGAAGGTTGGGCAGAAGCTGGGAGGTGTGAAAGATGCAGATGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab