CircRNA Information

General Information
circRNA Basic Information
CircID chr3:39098055|39098259
Strand -
CircType exon
Host Gene ENSG00000114745.12;
Algorism CIRI2;
Sequence CTGAGGGTACACGGCCAAAAGATATCCTCCCACAAGGCCCATGGCCCCCTCTCACCACCCACTGAGGCCTCATGTCCCACCAAAGCAGCAAGGAATCCTGACCGCATAGTGCAGCCCGGGCTGCCTGCCCACATCTGGGCCTCATGAAATGTCATCATGGGCCTTGTCACAGCCCAGGGTGTTATTCTGTGGTAGAGATCTGGGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:39098055|39098259 hsa-miR-433-5p 0 0 1
chr3:39098055|39098259 hsa-miR-433-3p 0 0 1
chr3:39098055|39098259 hsa-miR-541-5p 0 0 1
chr3:39098055|39098259 hsa-miR-541-3p 0 0 1
chr3:39098055|39098259 hsa-miR-1293 0 0 1
chr3:39098055|39098259 hsa-miR-1272 0 0 1
chr3:39098055|39098259 hsa-miR-299-3p 0 1 1
chr3:39098055|39098259 hsa-miR-654-5p 0 0 1
chr3:39098055|39098259 hsa-miR-502-5p 0 1 1
chr3:39098055|39098259 hsa-miR-576-3p 0 0 1
chr3:39098055|39098259 hsa-miR-140-3p 0 1 1
chr3:39098055|39098259 hsa-miR-1302 0 0 1
chr3:39098055|39098259 hsa-miR-542-3p 0 0 1
chr3:39098055|39098259 hsa-miR-9 0 0 1
chr3:39098055|39098259 hsa-miR-1185 0 0 1
chr3:39098055|39098259 hsa-miR-608 1 0 0
chr3:39098055|39098259 hsa-miR-623 1 0 0
chr3:39098055|39098259 hsa-miR-663a 1 0 0
chr3:39098055|39098259 hsa-miR-760 1 0 0
chr3:39098055|39098259 hsa-miR-1182 1 0 0
chr3:39098055|39098259 hsa-miR-1538 1 1 0
chr3:39098055|39098259 hsa-miR-2861 1 0 0
chr3:39098055|39098259 hsa-miR-3161 1 0 0
chr3:39098055|39098259 hsa-miR-3188 1 0 0
chr3:39098055|39098259 hsa-miR-3196 1 0 0
chr3:39098055|39098259 hsa-miR-4298 1 1 0
chr3:39098055|39098259 hsa-miR-4322 0 1 0
chr3:39098055|39098259 hsa-miR-4265 0 1 0
chr3:39098055|39098259 hsa-miR-3689c 1 1 0
chr3:39098055|39098259 hsa-miR-4506 1 0 0
chr3:39098055|39098259 hsa-miR-1587 1 1 0
chr3:39098055|39098259 hsa-miR-4654 1 0 0
chr3:39098055|39098259 hsa-miR-4656 1 0 0
chr3:39098055|39098259 hsa-miR-4675 0 1 0
chr3:39098055|39098259 hsa-miR-4692 0 1 0
chr3:39098055|39098259 hsa-miR-4721 1 0 0
chr3:39098055|39098259 hsa-miR-4736 1 0 0
chr3:39098055|39098259 hsa-miR-4739 1 0 0
chr3:39098055|39098259 hsa-miR-4741 1 1 0
chr3:39098055|39098259 hsa-miR-5093 1 0 0
chr3:39098055|39098259 hsa-miR-6133 1 0 0
chr3:39098055|39098259 hsa-miR-7974 0 1 0
chr3:39098055|39098259 hsa-miR-92a-2-5p 1 0 0
chr3:39098055|39098259 hsa-miR-128-1-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6765-5p 1 0 0
chr3:39098055|39098259 hsa-miR-7106-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6894-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6799-5p 1 0 0
chr3:39098055|39098259 hsa-miR-1227-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6089 1 0 0
chr3:39098055|39098259 hsa-miR-6741-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6759-5p 1 1 0
chr3:39098055|39098259 hsa-miR-3187-3p 1 0 0
chr3:39098055|39098259 hsa-miR-23b-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6748-5p 1 1 0
chr3:39098055|39098259 hsa-miR-6793-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6796-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6732-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6805-5p 1 1 0
chr3:39098055|39098259 hsa-miR-6827-5p 1 0 0
chr3:39098055|39098259 hsa-miR-23a-5p 1 0 0
chr3:39098055|39098259 hsa-miR-1224-5p 1 0 0
chr3:39098055|39098259 hsa-miR-4793-3p 0 1 0
chr3:39098055|39098259 hsa-miR-6821-5p 1 0 0
chr3:39098055|39098259 hsa-miR-30b-3p 1 0 0
chr3:39098055|39098259 hsa-miR-5008-5p 1 1 0
chr3:39098055|39098259 hsa-miR-6786-5p 1 1 0
chr3:39098055|39098259 hsa-miR-5088-5p 1 0 0
chr3:39098055|39098259 hsa-miR-7109-5p 1 0 0
chr3:39098055|39098259 hsa-miR-1226-5p 1 1 0
chr3:39098055|39098259 hsa-miR-3944-3p 1 0 0
chr3:39098055|39098259 hsa-miR-4640-5p 1 0 0
chr3:39098055|39098259 hsa-miR-30c-2-3p 1 0 0
chr3:39098055|39098259 hsa-miR-1228-5p 1 0 0
chr3:39098055|39098259 hsa-miR-4690-5p 0 1 0
chr3:39098055|39098259 hsa-miR-149-3p 1 0 0
chr3:39098055|39098259 hsa-miR-3616-3p 1 0 0
chr3:39098055|39098259 hsa-miR-193a-5p 1 0 0
chr3:39098055|39098259 hsa-miR-500a-5p 1 0 0
chr3:39098055|39098259 hsa-miR-106b-3p 1 0 0
chr3:39098055|39098259 hsa-miR-514a-5p 0 1 0
chr3:39098055|39098259 hsa-miR-1233-5p 1 0 0
chr3:39098055|39098259 hsa-miR-1273h-5p 1 0 0
chr3:39098055|39098259 hsa-miR-3689b-3p 1 1 0
chr3:39098055|39098259 hsa-miR-4763-3p 1 0 0
chr3:39098055|39098259 hsa-miR-6769b-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6778-5p 1 1 0
chr3:39098055|39098259 hsa-miR-6775-5p 1 0 0
chr3:39098055|39098259 hsa-miR-5001-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6756-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6769a-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6851-5p 1 0 0
chr3:39098055|39098259 hsa-miR-1249-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6779-5p 1 1 0
chr3:39098055|39098259 hsa-miR-7111-5p 1 0 0
chr3:39098055|39098259 hsa-miR-3620-5p 1 1 0
chr3:39098055|39098259 hsa-miR-5196-5p 1 0 0
chr3:39098055|39098259 hsa-miR-1237-5p 1 0 0
chr3:39098055|39098259 hsa-miR-328-5p 1 0 0
chr3:39098055|39098259 hsa-miR-3689a-3p 1 0 0
chr3:39098055|39098259 hsa-miR-4632-5p 1 0 0
chr3:39098055|39098259 hsa-miR-4726-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6795-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6846-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6848-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6858-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6883-5p 1 0 0
chr3:39098055|39098259 hsa-miR-4758-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6511b-5p 1 0 0
chr3:39098055|39098259 hsa-miR-3085-5p 1 0 0
chr3:39098055|39098259 hsa-miR-30c-1-3p 1 0 0
chr3:39098055|39098259 hsa-miR-1914-3p 1 0 0
chr3:39098055|39098259 hsa-miR-6724-5p 1 0 0
chr3:39098055|39098259 hsa-miR-6791-5p 0 1 0
chr3:39098055|39098259 hsa-miR-6762-5p 1 1 0
chr3:39098055|39098259 hsa-miR-3064-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:39098055|39098259
ORF Type ORF1
Protein Length 48
Nucleotide Length 147
Protein Sequence LRVHGQKISSHKAHGPLSPPTEASCPTKAARNPDRIVQPGLPAHIWAS
Nucleotide Sequence CTGAGGGTACACGGCCAAAAGATATCCTCCCACAAGGCCCATGGCCCCCTCTCACCACCCACTGAGGCCTCATGTCCCACCAAAGCAGCAAGGAATCCTGACCGCATAGTGCAGCCCGGGCTGCCTGCCCACATCTGGGCCTCATGA
CircID chr3:39098055|39098259
ORF Type ORF2
Protein Length 27
Nucleotide Length 81
Protein Sequence MPTSGPHEMSSWALSQPRVLFCGRDLG
Nucleotide Sequence CTGCCCACATCTGGGCCTCATGAAATGTCATCATGGGCCTTGTCACAGCCCAGGGTGTTATTCTGTGGTAGAGATCTGGGC
CircID chr3:39098055|39098259
ORF Type ORF3
Protein Length 48
Nucleotide Length 144
Protein Sequence MRPRCGQAARAALCGQDSLLLWWDMRPQWVVRGGHGPCGRISFGRVPS
Nucleotide Sequence ATGAGGCCCAGATGTGGGCAGGCAGCCCGGGCTGCACTATGCGGTCAGGATTCCTTGCTGCTTTGGTGGGACATGAGGCCTCAGTGGGTGGTGAGAGGGGGCCATGGGCCTTGTGGGAGGATATCTTTTGGCCGTGTACCCTCA
CircID chr3:39098055|39098259
ORF Type ORF4
Protein Length 52
Nucleotide Length 156
Protein Sequence MMTFHEAQMWAGSPGCTMRSGFLAALVGHEASVGGERGPWALWEDIFWPCTL
Nucleotide Sequence ATGATGACATTTCATGAGGCCCAGATGTGGGCAGGCAGCCCGGGCTGCACTATGCGGTCAGGATTCCTTGCTGCTTTGGTGGGACATGAGGCCTCAGTGGGTGGTGAGAGGGGGCCATGGGCCTTGTGGGAGGATATCTTTTGGCCGTGTACCCTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab