CircRNA Information

General Information
circRNA Basic Information
CircID chr3:42097762|42097990
Strand -
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTGAACTTTATATCAAGGACTCACCACACAGTTTATGATTTGAGTTTTTAAATTTCCCAGACATCTGCCTTAGAAAACAGACCAAACACATACTGATAGGTTGGTCCATCAGAGTGTGCTCTGGGAAGGGTTGTGGAGGTCTCACCTTGTAAACTGCTGTGATACTGACAACTATGTGAACACCAGGGTCCAGTGATGTTTCTATTTCCGGAGGAGTATCTTGGAGGAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:42097762|42097990 hsa-miR-23a-5p 0 0 1
chr3:42097762|42097990 hsa-miR-23a-3p 0 0 1
chr3:42097762|42097990 hsa-miR-223-5p 0 0 1
chr3:42097762|42097990 hsa-miR-223-3p 0 0 1
chr3:42097762|42097990 hsa-miR-23b-5p 0 0 1
chr3:42097762|42097990 hsa-miR-23b-3p 0 0 1
chr3:42097762|42097990 hsa-miR-340-5p 0 0 1
chr3:42097762|42097990 hsa-miR-340-3p 0 0 1
chr3:42097762|42097990 hsa-miR-133b 0 0 1
chr3:42097762|42097990 hsa-miR-494-5p 0 0 1
chr3:42097762|42097990 hsa-miR-494-3p 0 0 1
chr3:42097762|42097990 hsa-miR-504-5p 0 0 1
chr3:42097762|42097990 hsa-miR-504-3p 0 0 1
chr3:42097762|42097990 hsa-miR-506-5p 0 0 1
chr3:42097762|42097990 hsa-miR-506-3p 0 0 1
chr3:42097762|42097990 hsa-miR-561-5p 0 0 1
chr3:42097762|42097990 hsa-miR-561-3p 0 0 1
chr3:42097762|42097990 hsa-miR-624-5p 0 0 1
chr3:42097762|42097990 hsa-miR-624-3p 0 0 1
chr3:42097762|42097990 hsa-miR-892a 0 0 1
chr3:42097762|42097990 hsa-miR-888-5p 0 0 1
chr3:42097762|42097990 hsa-miR-888-3p 0 0 1
chr3:42097762|42097990 hsa-miR-1231 0 0 1
chr3:42097762|42097990 hsa-miR-548g-5p 0 0 1
chr3:42097762|42097990 hsa-miR-548g-3p 0 0 1
chr3:42097762|42097990 hsa-miR-769-5p 0 1 1
chr3:42097762|42097990 hsa-miR-142-5p 0 0 1
chr3:42097762|42097990 hsa-miR-654-3p 0 0 1
chr3:42097762|42097990 hsa-miR-576-5p 0 0 1
chr3:42097762|42097990 hsa-miR-548d-3p 0 0 1
chr3:42097762|42097990 hsa-miR-644 0 0 1
chr3:42097762|42097990 hsa-miR-124 0 0 1
chr3:42097762|42097990 hsa-miR-147 0 0 1
chr3:42097762|42097990 hsa-miR-133a 0 0 1
chr3:42097762|42097990 hsa-miR-499-3p 0 0 1
chr3:42097762|42097990 hsa-miR-378h 1 1 0
chr3:42097762|42097990 hsa-miR-7978 0 1 0
chr3:42097762|42097990 hsa-miR-653-3p 0 1 0
chr3:42097762|42097990 hsa-miR-6501-3p 0 1 0
chr3:42097762|42097990 hsa-miR-6734-3p 0 1 0
chr3:42097762|42097990 hsa-miR-6511a-5p 0 1 0
chr3:42097762|42097990 hsa-miR-4646-5p 0 1 0
chr3:42097762|42097990 hsa-miR-7107-3p 0 1 0
chr3:42097762|42097990 hsa-miR-6792-3p 0 1 0
chr3:42097762|42097990 hsa-miR-6864-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


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    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr3:42097762|42097990
ORF Type ORF1
Protein Length 31
Nucleotide Length 96
Protein Sequence MVHQSVLWEGLWRSHLVNCCDTDNYVNTRVQ
Nucleotide Sequence TTGGTCCATCAGAGTGTGCTCTGGGAAGGGTTGTGGAGGTCTCACCTTGTAAACTGCTGTGATACTGACAACTATGTGAACACCAGGGTCCAGTGA

CircID chr3:42097762|42097990
ORF Type ORF2
Protein Length 61
Nucleotide Length 186
Protein Sequence MDPGVHIVVSITAVYKVRPPQPFPEHTLMDQPISMCLVCFLRQMSGKFKNSNHKLCGESLI
Nucleotide Sequence CTGGACCCTGGTGTTCACATAGTTGTCAGTATCACAGCAGTTTACAAGGTGAGACCTCCACAACCCTTCCCAGAGCACACTCTGATGGACCAACCTATCAGTATGTGTTTGGTCTGTTTTCTAAGGCAGATGTCTGGGAAATTTAAAAACTCAAATCATAAACTGTGTGGTGAGTCCTTGATATAA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites