CircRNA Information

General Information
circRNA Basic Information
CircID chr3:42647939|42648200
Strand +
CircType exon
Host Gene ENSG00000114857.16;
Algorism CIRI2;
Sequence CTTAAAATATATCTGTGGGCTTGAGCTAATCATATGCCCCTAAAACAGGAGGACGGGAGAGAGATATGAAGCATGAGAAAGAGCAGGAAGGCTGGTTTGAAGCTGGAGGGGACCACATAAGAAGGAATGCAGGCAGCCTTGAGGTGAGAGAGGGGCCTCCAGCTGAGAGCCAGCAAAGAACTGAATTCCGCCAACAACCTGAATGAACTTAGAAGCAGATTCTTCCCCAGAGCCTCCATGAAGGAATGTTGTCCTGCCAACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:42647939|42648200 hsa-miR-205-5p 0 0 1
chr3:42647939|42648200 hsa-miR-205-3p 0 0 1
chr3:42647939|42648200 hsa-miR-149-5p 0 0 1
chr3:42647939|42648200 hsa-miR-149-3p 0 0 1
chr3:42647939|42648200 hsa-miR-370-5p 0 0 1
chr3:42647939|42648200 hsa-miR-370-3p 0 0 1
chr3:42647939|42648200 hsa-miR-326 1 0 1
chr3:42647939|42648200 hsa-miR-637 1 0 1
chr3:42647939|42648200 hsa-miR-650 0 0 1
chr3:42647939|42648200 hsa-miR-766-5p 0 0 1
chr3:42647939|42648200 hsa-miR-766-3p 0 0 1
chr3:42647939|42648200 hsa-miR-1298-5p 0 0 1
chr3:42647939|42648200 hsa-miR-1298-3p 0 0 1
chr3:42647939|42648200 hsa-miR-543 0 0 1
chr3:42647939|42648200 hsa-miR-760 1 0 1
chr3:42647939|42648200 hsa-miR-1229-5p 0 0 1
chr3:42647939|42648200 hsa-miR-1229-3p 0 0 1
chr3:42647939|42648200 hsa-miR-1237-5p 0 0 1
chr3:42647939|42648200 hsa-miR-1237-3p 0 0 1
chr3:42647939|42648200 hsa-miR-1286 0 0 1
chr3:42647939|42648200 hsa-miR-1247-5p 0 0 1
chr3:42647939|42648200 hsa-miR-1247-3p 0 0 1
chr3:42647939|42648200 hsa-miR-1248 0 0 1
chr3:42647939|42648200 hsa-miR-299-3p 0 0 1
chr3:42647939|42648200 hsa-miR-490-5p 0 0 1
chr3:42647939|42648200 hsa-miR-1207-3p 0 0 1
chr3:42647939|42648200 hsa-miR-1207-5p 1 0 1
chr3:42647939|42648200 hsa-miR-330-5p 0 0 1
chr3:42647939|42648200 hsa-miR-1275 1 0 0
chr3:42647939|42648200 hsa-miR-4312 1 0 0
chr3:42647939|42648200 hsa-miR-4271 1 0 0
chr3:42647939|42648200 hsa-miR-8089 1 0 0
chr3:42647939|42648200 hsa-miR-9898 1 0 0
chr3:42647939|42648200 hsa-miR-1843 1 0 0
chr3:42647939|42648200 hsa-miR-12116 1 0 0
chr3:42647939|42648200 hsa-miR-12125 1 0 0
chr3:42647939|42648200 hsa-miR-6892-3p 1 0 0
chr3:42647939|42648200 hsa-miR-219a-1-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6875-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6762-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6873-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6849-3p 1 0 0
chr3:42647939|42648200 hsa-miR-7110-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6845-3p 1 0 0
chr3:42647939|42648200 hsa-miR-656-5p 1 0 0
chr3:42647939|42648200 hsa-miR-2467-5p 1 0 0
chr3:42647939|42648200 hsa-miR-4753-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6715b-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6728-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6882-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6858-3p 1 0 0
chr3:42647939|42648200 hsa-miR-3934-3p 1 0 0
chr3:42647939|42648200 hsa-miR-4763-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6894-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6514-3p 1 0 0
chr3:42647939|42648200 hsa-miR-7111-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6789-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6742-3p 1 0 0
chr3:42647939|42648200 hsa-miR-339-5p 1 0 0
chr3:42647939|42648200 hsa-miR-3922-5p 1 0 0
chr3:42647939|42648200 hsa-miR-1236-3p 1 0 0
chr3:42647939|42648200 hsa-miR-1226-3p 1 0 0
chr3:42647939|42648200 hsa-miR-4687-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6715a-3p 1 0 0
chr3:42647939|42648200 hsa-miR-2276-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6895-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6886-3p 1 0 0
chr3:42647939|42648200 hsa-miR-5088-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6767-3p 1 0 0
chr3:42647939|42648200 hsa-miR-4763-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6754-5p 1 0 0
chr3:42647939|42648200 hsa-miR-320a-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6754-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6866-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6780b-5p 1 0 0
chr3:42647939|42648200 hsa-miR-328-5p 1 0 0
chr3:42647939|42648200 hsa-miR-4725-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6795-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6846-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6848-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6511a-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6784-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6862-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6805-3p 1 0 0
chr3:42647939|42648200 hsa-miR-4723-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6511b-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6891-3p 1 0 0
chr3:42647939|42648200 hsa-miR-3150b-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6744-3p 1 0 0
chr3:42647939|42648200 hsa-miR-323b-5p 1 0 0
chr3:42647939|42648200 hsa-miR-6876-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6833-3p 1 0 0
chr3:42647939|42648200 hsa-miR-5195-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6807-3p 1 0 0
chr3:42647939|42648200 hsa-miR-6503-5p 1 0 0
chr3:42647939|42648200 hsa-miR-3059-3p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:42647939|42648200
ORF Type ORF1
Protein Length 33
Nucleotide Length 99
Protein Sequence MRASKELNSANNLNELRSRFFPRASMKECCPAN
Nucleotide Sequence CTGAGAGCCAGCAAAGAACTGAATTCCGCCAACAACCTGAATGAACTTAGAAGCAGATTCTTCCCCAGAGCCTCCATGAAGGAATGTTGTCCTGCCAAC
CircID chr3:42647939|42648200
ORF Type ORF2
Protein Length 46
Nucleotide Length 141
Protein Sequence MKHEKEQEGWFEAGGDHIRRNAGSLEVREGPPAESQQRTEFRQQPE
Nucleotide Sequence ATGAAGCATGAGAAAGAGCAGGAAGGCTGGTTTGAAGCTGGAGGGGACCACATAAGAAGGAATGCAGGCAGCCTTGAGGTGAGAGAGGGGCCTCCAGCTGAGAGCCAGCAAAGAACTGAATTCCGCCAACAACCTGAATGA
CircID chr3:42647939|42648200
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MPAFLLMWSPPASNQPSCSFSCFISLSRPPVLGAYD
Nucleotide Sequence CTGCCTGCATTCCTTCTTATGTGGTCCCCTCCAGCTTCAAACCAGCCTTCCTGCTCTTTCTCATGCTTCATATCTCTCTCCCGTCCTCCTGTTTTAGGGGCATATGATTAG
CircID chr3:42647939|42648200
ORF Type ORF4
Protein Length 40
Nucleotide Length 123
Protein Sequence MEAPLSPQGCLHSFLCGPLQLQTSLPALSHASYLSPVLLF
Nucleotide Sequence CTGGAGGCCCCTCTCTCACCTCAAGGCTGCCTGCATTCCTTCTTATGTGGTCCCCTCCAGCTTCAAACCAGCCTTCCTGCTCTTTCTCATGCTTCATATCTCTCTCCCGTCCTCCTGTTTTAG
CircID chr3:42647939|42648200
ORF Type ORF5
Protein Length 76
Nucleotide Length 231
Protein Sequence LAGQHSFMEALGKNLLLSSFRLLAEFSSLLALSWRPLSHLKAACIPSYVVPSSFKPAFLLFLMLHISLPSSCFRGI
Nucleotide Sequence TTGGCAGGACAACATTCCTTCATGGAGGCTCTGGGGAAGAATCTGCTTCTAAGTTCATTCAGGTTGTTGGCGGAATTCAGTTCTTTGCTGGCTCTCAGCTGGAGGCCCCTCTCTCACCTCAAGGCTGCCTGCATTCCTTCTTATGTGGTCCCCTCCAGCTTCAAACCAGCCTTCCTGCTCTTTCTCATGCTTCATATCTCTCTCCCGTCCTCCTGTTTTAGGGGCATATGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab