CircRNA Information

General Information
circRNA Basic Information
CircID chr3:43345601|43345802
Strand +
CircType exon
Host Gene
Algorism CIRI2;
Sequence CTTAAGCTACTTGATTTGACAACTCCCAATACCACACCACCTCACTGCTGCAGGATCCTATCTGTACCAACACCACTCCTTTCAGCTAAGCCACATCTTATACCTACATTCTTGAGATGGCATCTGGGACTTCATTCTCTAGTGGAGTCCCTGTGTTCTCCCTCAATTCCAGGTCTAGGACCCTGCCCCTGGACTCCAGAAC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:43345601|43345802 hsa-miR-21-5p 0 0 1
chr3:43345601|43345802 hsa-miR-21-3p 0 0 1
chr3:43345601|43345802 hsa-miR-26b-5p 0 0 1
chr3:43345601|43345802 hsa-miR-26b-3p 0 0 1
chr3:43345601|43345802 hsa-miR-107 0 0 1
chr3:43345601|43345802 hsa-miR-488-5p 0 0 1
chr3:43345601|43345802 hsa-miR-488-3p 0 0 1
chr3:43345601|43345802 hsa-miR-562 0 0 1
chr3:43345601|43345802 hsa-miR-619-5p 0 0 1
chr3:43345601|43345802 hsa-miR-619-3p 0 0 1
chr3:43345601|43345802 hsa-miR-631 0 0 1
chr3:43345601|43345802 hsa-miR-1294 1 1 1
chr3:43345601|43345802 hsa-miR-1297 0 0 1
chr3:43345601|43345802 hsa-miR-1299 0 0 1
chr3:43345601|43345802 hsa-miR-1263 0 0 1
chr3:43345601|43345802 hsa-miR-513c-5p 0 0 1
chr3:43345601|43345802 hsa-miR-513c-3p 0 0 1
chr3:43345601|43345802 hsa-miR-486-3p 0 0 1
chr3:43345601|43345802 hsa-miR-1184 0 0 1
chr3:43345601|43345802 hsa-miR-1289 0 1 1
chr3:43345601|43345802 hsa-miR-331-5p 0 0 1
chr3:43345601|43345802 hsa-miR-576-3p 0 1 1
chr3:43345601|43345802 hsa-miR-1207-5p 1 0 1
chr3:43345601|43345802 hsa-miR-590-5p 0 0 1
chr3:43345601|43345802 hsa-miR-103 0 0 1
chr3:43345601|43345802 hsa-miR-220c 0 0 1
chr3:43345601|43345802 hsa-miR-26a 0 0 1
chr3:43345601|43345802 hsa-miR-516b 0 0 1
chr3:43345601|43345802 hsa-miR-608 1 1 0
chr3:43345601|43345802 hsa-miR-1183 1 0 0
chr3:43345601|43345802 hsa-miR-1268a 1 0 0
chr3:43345601|43345802 hsa-miR-4309 0 1 0
chr3:43345601|43345802 hsa-miR-3661 0 1 0
chr3:43345601|43345802 hsa-miR-1268b 1 0 0
chr3:43345601|43345802 hsa-miR-4505 1 0 0
chr3:43345601|43345802 hsa-miR-4507 1 0 0
chr3:43345601|43345802 hsa-miR-1587 1 0 0
chr3:43345601|43345802 hsa-miR-4647 1 0 0
chr3:43345601|43345802 hsa-miR-4651 1 0 0
chr3:43345601|43345802 hsa-miR-4688 1 1 0
chr3:43345601|43345802 hsa-miR-4710 1 0 0
chr3:43345601|43345802 hsa-miR-6133 0 1 0
chr3:43345601|43345802 hsa-miR-6134 1 1 0
chr3:43345601|43345802 hsa-miR-211-3p 0 1 0
chr3:43345601|43345802 hsa-miR-150-3p 0 1 0
chr3:43345601|43345802 hsa-miR-4433b-3p 1 1 0
chr3:43345601|43345802 hsa-miR-504-3p 1 1 0
chr3:43345601|43345802 hsa-miR-4433a-3p 1 1 0
chr3:43345601|43345802 hsa-miR-6765-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6825-5p 1 0 0
chr3:43345601|43345802 hsa-miR-27a-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6799-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6730-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6721-5p 0 1 0
chr3:43345601|43345802 hsa-miR-7108-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6742-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6871-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6796-5p 1 0 0
chr3:43345601|43345802 hsa-miR-182-3p 0 1 0
chr3:43345601|43345802 hsa-miR-6760-5p 0 1 0
chr3:43345601|43345802 hsa-miR-6782-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6835-5p 1 0 0
chr3:43345601|43345802 hsa-miR-1229-5p 1 0 0
chr3:43345601|43345802 hsa-miR-885-3p 1 0 0
chr3:43345601|43345802 hsa-miR-4713-3p 1 0 0
chr3:43345601|43345802 hsa-miR-7854-3p 1 0 0
chr3:43345601|43345802 hsa-miR-6789-5p 1 0 0
chr3:43345601|43345802 hsa-miR-4766-5p 0 1 0
chr3:43345601|43345802 hsa-miR-4763-3p 1 1 0
chr3:43345601|43345802 hsa-miR-6812-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6737-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6743-5p 1 1 0
chr3:43345601|43345802 hsa-miR-6752-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6754-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6756-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6815-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6819-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6851-5p 1 0 0
chr3:43345601|43345802 hsa-miR-7110-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6722-3p 1 0 0
chr3:43345601|43345802 hsa-miR-3620-5p 1 0 0
chr3:43345601|43345802 hsa-miR-10526-3p 1 0 0
chr3:43345601|43345802 hsa-miR-328-5p 1 0 0
chr3:43345601|43345802 hsa-miR-3689a-3p 1 0 0
chr3:43345601|43345802 hsa-miR-6738-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6848-5p 1 0 0
chr3:43345601|43345802 hsa-miR-6858-5p 1 0 0
chr3:43345601|43345802 hsa-miR-3198 0 1 0
chr3:43345601|43345802 hsa-miR-6856-5p 1 0 0
chr3:43345601|43345802 hsa-miR-3619-5p 1 0 0
chr3:43345601|43345802 hsa-miR-514b-5p 0 1 0
chr3:43345601|43345802 hsa-miR-5588-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:43345601|43345802
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MTTPNTTPPHCCRILSVPTPLLSAKPHLIPTFLRWHLGLHSLVESLCSPSIPGLGPCPWTPE
Nucleotide Sequence TTGACAACTCCCAATACCACACCACCTCACTGCTGCAGGATCCTATCTGTACCAACACCACTCCTTTCAGCTAAGCCACATCTTATACCTACATTCTTGAGATGGCATCTGGGACTTCATTCTCTAGTGGAGTCCCTGTGTTCTCCCTCAATTCCAGGTCTAGGACCCTGCCCCTGGACTCCAGAA
CircID chr3:43345601|43345802
ORF Type ORF2
Protein Length 28
Nucleotide Length 84
Protein Sequence MASGTSFSSGVPVFSLNSRSRTLPLDSR
Nucleotide Sequence ATGGCATCTGGGACTTCATTCTCTAGTGGAGTCCCTGTGTTCTCCCTCAATTCCAGGTCTAGGACCCTGCCCCTGGACTCCAGA
CircID chr3:43345601|43345802
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MESRGRVLDLELRENTGTPLENEVPDAISRM
Nucleotide Sequence CTGGAGTCCAGGGGCAGGGTCCTAGACCTGGAATTGAGGGAGAACACAGGGACTCCACTAGAGAATGAAGTCCCAGATGCCATCTCAAGAATGTAG
CircID chr3:43345601|43345802
ORF Type ORF4
Protein Length 27
Nucleotide Length 84
Protein Sequence MKGVVLVQIGSCSSEVVWYWELSNQVA
Nucleotide Sequence CTGAAAGGAGTGGTGTTGGTACAGATAGGATCCTGCAGCAGTGAGGTGGTGTGGTATTGGGAGTTGTCAAATCAAGTAGCTTAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab