CircRNA Information

General Information
circRNA Basic Information
CircID chr3:47417462|47417652
Strand +
CircType exon
Host Gene ENSG00000114650.17;
Algorism CIRI2;
Sequence CTGCTTAATTGACACCAACTTTTCAGCGCAGCCTCGGTCCTCACAGCCCACTCAGCCCGAGCCCCGGCACCGGGCGGTCTGTGGCCGCTCTCGGGACTCCCCAGGCTATGACTTCAGCTGCCTGGTGCAGCGGGTGTACCAGGAGGAGGGGCTGGCGGCCGTCTGCACACCAGCCCTGCGCCCACCCTCGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:47417462|47417652 hsa-miR-596 0 0 1
chr3:47417462|47417652 hsa-miR-604 0 0 1
chr3:47417462|47417652 hsa-miR-661 1 0 1
chr3:47417462|47417652 hsa-miR-541-5p 0 0 1
chr3:47417462|47417652 hsa-miR-541-3p 0 0 1
chr3:47417462|47417652 hsa-miR-939-5p 0 0 1
chr3:47417462|47417652 hsa-miR-939-3p 0 0 1
chr3:47417462|47417652 hsa-miR-1294 0 0 1
chr3:47417462|47417652 hsa-miR-1224-5p 0 0 1
chr3:47417462|47417652 hsa-miR-767-5p 0 0 1
chr3:47417462|47417652 hsa-miR-485-5p 0 0 1
chr3:47417462|47417652 hsa-miR-1289 0 0 1
chr3:47417462|47417652 hsa-miR-654-5p 0 1 1
chr3:47417462|47417652 hsa-miR-138 0 0 1
chr3:47417462|47417652 hsa-miR-608 1 0 0
chr3:47417462|47417652 hsa-miR-637 0 1 0
chr3:47417462|47417652 hsa-miR-663a 1 0 0
chr3:47417462|47417652 hsa-miR-762 1 1 0
chr3:47417462|47417652 hsa-miR-1538 1 0 0
chr3:47417462|47417652 hsa-miR-3937 1 1 0
chr3:47417462|47417652 hsa-miR-4449 1 0 0
chr3:47417462|47417652 hsa-miR-4478 1 0 0
chr3:47417462|47417652 hsa-miR-4481 0 1 0
chr3:47417462|47417652 hsa-miR-4498 1 1 0
chr3:47417462|47417652 hsa-miR-4505 1 0 0
chr3:47417462|47417652 hsa-miR-4508 1 1 0
chr3:47417462|47417652 hsa-miR-1587 1 1 0
chr3:47417462|47417652 hsa-miR-3972 0 1 0
chr3:47417462|47417652 hsa-miR-4651 1 0 0
chr3:47417462|47417652 hsa-miR-4656 1 1 0
chr3:47417462|47417652 hsa-miR-4674 1 0 0
chr3:47417462|47417652 hsa-miR-4675 1 1 0
chr3:47417462|47417652 hsa-miR-4692 0 1 0
chr3:47417462|47417652 hsa-miR-4741 1 1 0
chr3:47417462|47417652 hsa-miR-4751 1 1 0
chr3:47417462|47417652 hsa-miR-4767 1 0 0
chr3:47417462|47417652 hsa-miR-5787 1 0 0
chr3:47417462|47417652 hsa-miR-6132 0 1 0
chr3:47417462|47417652 hsa-miR-7974 0 1 0
chr3:47417462|47417652 hsa-miR-7978 0 1 0
chr3:47417462|47417652 hsa-miR-8077 0 1 0
chr3:47417462|47417652 hsa-miR-8089 0 1 0
chr3:47417462|47417652 hsa-miR-6765-5p 1 0 0
chr3:47417462|47417652 hsa-miR-3150a-3p 0 1 0
chr3:47417462|47417652 hsa-miR-6804-5p 0 1 0
chr3:47417462|47417652 hsa-miR-7160-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6727-5p 1 0 0
chr3:47417462|47417652 hsa-miR-197-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6845-3p 0 1 0
chr3:47417462|47417652 hsa-miR-6742-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4711-5p 0 1 0
chr3:47417462|47417652 hsa-miR-6748-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6796-5p 1 0 0
chr3:47417462|47417652 hsa-miR-185-3p 1 0 0
chr3:47417462|47417652 hsa-miR-6829-5p 1 0 0
chr3:47417462|47417652 hsa-miR-3130-3p 0 1 0
chr3:47417462|47417652 hsa-miR-4793-3p 1 0 0
chr3:47417462|47417652 hsa-miR-6858-3p 1 1 0
chr3:47417462|47417652 hsa-miR-6786-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6852-5p 0 1 0
chr3:47417462|47417652 hsa-miR-1226-5p 1 0 0
chr3:47417462|47417652 hsa-miR-3944-3p 1 1 0
chr3:47417462|47417652 hsa-miR-1908-3p 1 1 0
chr3:47417462|47417652 hsa-miR-4783-3p 1 1 0
chr3:47417462|47417652 hsa-miR-6784-5p 1 1 0
chr3:47417462|47417652 hsa-miR-1228-5p 1 0 0
chr3:47417462|47417652 hsa-miR-296-3p 1 0 0
chr3:47417462|47417652 hsa-miR-6823-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4787-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4667-3p 0 1 0
chr3:47417462|47417652 hsa-miR-4446-3p 0 1 0
chr3:47417462|47417652 hsa-miR-6769a-3p 0 1 0
chr3:47417462|47417652 hsa-miR-6877-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4800-5p 1 0 0
chr3:47417462|47417652 hsa-miR-660-3p 0 1 0
chr3:47417462|47417652 hsa-miR-1911-3p 0 1 0
chr3:47417462|47417652 hsa-miR-6887-3p 0 1 0
chr3:47417462|47417652 hsa-miR-744-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4749-3p 0 1 0
chr3:47417462|47417652 hsa-miR-2277-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6812-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6775-5p 1 0 0
chr3:47417462|47417652 hsa-miR-1343-5p 1 0 0
chr3:47417462|47417652 hsa-miR-5001-5p 1 1 0
chr3:47417462|47417652 hsa-miR-6756-5p 1 1 0
chr3:47417462|47417652 hsa-miR-7107-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6763-5p 0 1 0
chr3:47417462|47417652 hsa-miR-3620-5p 1 1 0
chr3:47417462|47417652 hsa-miR-6836-5p 0 1 0
chr3:47417462|47417652 hsa-miR-10396a-5p 1 0 0
chr3:47417462|47417652 hsa-miR-10396b-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4685-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4745-5p 1 1 0
chr3:47417462|47417652 hsa-miR-6848-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6858-5p 1 0 0
chr3:47417462|47417652 hsa-miR-6889-5p 1 0 0
chr3:47417462|47417652 hsa-miR-4758-5p 1 1 0
chr3:47417462|47417652 hsa-miR-4700-5p 0 1 0
chr3:47417462|47417652 hsa-miR-6766-5p 0 1 0
chr3:47417462|47417652 hsa-miR-6512-3p 0 1 0
chr3:47417462|47417652 hsa-miR-6884-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:47417462|47417652
ORF Type ORF1
Protein Length 61
Nucleotide Length 183
Protein Sequence MTPTFQRSLGPHSPLSPSPGTGRSVAALGTPQAMTSAAWCSGCTRRRGWRPSAHQPCAHPR
Nucleotide Sequence TTGACACCAACTTTTCAGCGCAGCCTCGGTCCTCACAGCCCACTCAGCCCGAGCCCCGGCACCGGGCGGTCTGTGGCCGCTCTCGGGACTCCCCAGGCTATGACTTCAGCTGCCTGGTGCAGCGGGTGTACCAGGAGGAGGGGCTGGCGGCCGTCTGCACACCAGCCCTGCGCCCACCCTCGC
CircID chr3:47417462|47417652
ORF Type ORF2
Protein Length 34
Nucleotide Length 102
Protein Sequence MGSPESGHRPPGAGARAEWAVRTEAALKSWCQLS
Nucleotide Sequence CTGGGGAGTCCCGAGAGCGGCCACAGACCGCCCGGTGCCGGGGCTCGGGCTGAGTGGGCTGTGAGGACCGAGGCTGCGCTGAAAAGTTGGTGTCAATTAAGC
CircID chr3:47417462|47417652
ORF Type ORF3
Protein Length 33
Nucleotide Length 102
Protein Sequence MVHPLHQAAEVIAWGVPRAATDRPVPGLGLSGL
Nucleotide Sequence CTGGTACACCCGCTGCACCAGGCAGCTGAAGTCATAGCCTGGGGAGTCCCGAGAGCGGCCACAGACCGCCCGGTGCCGGGGCTCGGGCTGAGTGGGCTGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab