CircRNA Information

General Information
circRNA Basic Information
CircID chr3:47686049|47693300
Strand -
CircType exon
Host Gene ENSG00000173473.10;
Algorism find_circ;CIRI2;DCC;
Sequence TGAACCTAAAGAAAGATAGTGAAAATACACCTGTTAAAGGAGGAACTGTAGCGGATCTAGATGAGCAGGATGAAGAAACAGTCACAGCAGGAGGAAAGGAAGATGAAGATCCTGCCAAAGGTGATCAGAGTCGATCAGTTGACCTTGGGGAAGATAATGTGACAGAGCAGACCAATCACATTATTATTCCTAGTTATGCATCATGGTTTGATTATAACTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:47686049|47693300 hsa-miR-23a-5p 0 0 1
chr3:47686049|47693300 hsa-miR-23a-3p 0 0 1
chr3:47686049|47693300 hsa-miR-192-5p 0 0 1
chr3:47686049|47693300 hsa-miR-192-3p 0 0 1
chr3:47686049|47693300 hsa-miR-215-5p 0 0 1
chr3:47686049|47693300 hsa-miR-215-3p 0 0 1
chr3:47686049|47693300 hsa-miR-23b-5p 0 0 1
chr3:47686049|47693300 hsa-miR-23b-3p 0 0 1
chr3:47686049|47693300 hsa-miR-186-5p 0 0 1
chr3:47686049|47693300 hsa-miR-186-3p 0 0 1
chr3:47686049|47693300 hsa-miR-383-5p 0 0 1
chr3:47686049|47693300 hsa-miR-383-3p 0 0 1
chr3:47686049|47693300 hsa-miR-384 0 0 1
chr3:47686049|47693300 hsa-miR-586 0 0 1
chr3:47686049|47693300 hsa-miR-1183 0 1 1
chr3:47686049|47693300 hsa-miR-491-3p 0 0 1
chr3:47686049|47693300 hsa-miR-542-3p 0 0 1
chr3:47686049|47693300 hsa-miR-765 1 0 0
chr3:47686049|47693300 hsa-miR-3137 0 1 0
chr3:47686049|47693300 hsa-miR-4271 0 1 0
chr3:47686049|47693300 hsa-miR-4501 0 1 0
chr3:47686049|47693300 hsa-miR-4739 1 0 0
chr3:47686049|47693300 hsa-miR-12118 0 1 0
chr3:47686049|47693300 hsa-miR-6765-5p 1 0 0
chr3:47686049|47693300 hsa-miR-7106-5p 1 0 0
chr3:47686049|47693300 hsa-miR-6894-5p 1 1 0
chr3:47686049|47693300 hsa-miR-766-5p 1 1 0
chr3:47686049|47693300 hsa-miR-6730-5p 1 0 0
chr3:47686049|47693300 hsa-miR-3928-3p 0 1 0
chr3:47686049|47693300 hsa-miR-3189-3p 0 1 0
chr3:47686049|47693300 hsa-miR-6501-3p 0 1 0
chr3:47686049|47693300 hsa-miR-584-5p 0 1 0
chr3:47686049|47693300 hsa-miR-1249-5p 1 0 0
chr3:47686049|47693300 hsa-miR-7111-5p 1 0 0
chr3:47686049|47693300 hsa-miR-6780b-5p 1 1 0
chr3:47686049|47693300 hsa-miR-10526-3p 1 0 0
chr3:47686049|47693300 hsa-miR-6858-5p 1 0 0
chr3:47686049|47693300 hsa-miR-4723-5p 1 0 0
chr3:47686049|47693300 hsa-miR-3173-3p 0 1 0
chr3:47686049|47693300 hsa-miR-502-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:47686049|47693300
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MSRMKKQSQQEERKMKILPKVIRVDQLTLGKIM*
Nucleotide Sequence ATGAGCAGGATGAAGAAACAGTCACAGCAGGAGGAAAGGAAGATGAAGATCCTGCCAAAGGTGATCAGAGTCGATCAGTTGACCTTGGGGAAGATAATGTGA
CircID chr3:47686049|47693300
ORF Type ORF1
Protein Length 42
Nucleotide Length 126
Protein Sequence MSHYLPQGQLIDSDHLWQDLHLPRSATVPPLTGVFSLSFFRF
Nucleotide Sequence CTGTCACATTATCTTCCCCAAGGTCAACTGATCGACTCTGATCACCTTTGGCAGGATCTTCATCTTCCTAGATCCGCTACAGTTCCTCCTTTAACAGGTGTATTTTCACTATCTTTCTTTAGGTTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
chr3:47686049|47693300 NOP56 3 1 0
chr3:47686049|47693300 MOV10 0 0 1
chr3:47686049|47693300 ELAVL1 5 1 3
chr3:47686049|47693300 DHX9 1 1 0
chr3:47686049|47693300 KHDRBS1 0 2 0
chr3:47686049|47693300 CELF2 0 1 0
chr3:47686049|47693300 PRPF8 0 4 1
chr3:47686049|47693300 TAF15 0 1 0
chr3:47686049|47693300 FMR1 0 0 5
chr3:47686049|47693300 CPSF6 1 0 6
chr3:47686049|47693300 CSTF2 3 1 0
chr3:47686049|47693300 FUS 0 1 0
chr3:47686049|47693300 SRSF1 0 0 7
chr3:47686049|47693300 NOP58 4 2 1
chr3:47686049|47693300 U2AF2 12 4 5
chr3:47686049|47693300 DDX54 1 0 4
chr3:47686049|47693300 RBM10 1 0 0
chr3:47686049|47693300 FIP1L1 0 1 0
chr3:47686049|47693300 PTBP1 0 1 5
chr3:47686049|47693300 HNRNPC 47 22 1
chr3:47686049|47693300 TRA2A 0 0 8
chr3:47686049|47693300 ZNF184 0 0 5
chr3:47686049|47693300 HNRNPA1 1 1 0
chr3:47686049|47693300 SMNDC1 0 0 1
chr3:47686049|47693300 ACIN1 3 0 5
chr3:47686049|47693300 FXR1 0 0 3
chr3:47686049|47693300 IGF2BP1 1 0 0
chr3:47686049|47693300 IGF2BP3 0 0 1
chr3:47686049|47693300 IGF2BP2 5 2 5
chr3:47686049|47693300 TARDBP 6 0 4
chr3:47686049|47693300 STAU1 0 3 0
chr3:47686049|47693300 BUD13 0 0 5
chr3:47686049|47693300 RBFOX2 0 1 0
chr3:47686049|47693300 RBM47 0 0 1
chr3:47686049|47693300 EIF4G2 0 0 3
chr3:47686049|47693300 AARS 0 1 0
chr3:47686049|47693300 SAFB2 0 0 1
chr3:47686049|47693300 RBM22 0 1 0
chr3:47686049|47693300 ILF3 0 2 0
chr3:47686049|47693300 FBL 1 2 3
chr3:47686049|47693300 EIF4A3 5 1 6
chr3:47686049|47693300 AGO2 0 0 1
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab