CircRNA Information

General Information
circRNA Basic Information
CircID chr3:47849028|47849313
Strand +
CircType exon
Host Gene ENSG00000132153.13;
Algorism CIRI2;
Sequence GCCCTTCACCAGCTCCTCCTCCTCACTGTACTCGTTGCACTGGGCGGAGGCCAGGGTGCAGTCCGAGGGCTTCCCCACCAGGAAGGCCTCATAAATGTTCTCTGAGAACTGCTTGATGAGTCCTAGGGAGACAGAATGTGTGGTGGACCTACAGCCCCTAGCCACAGGCTGGAGGTGACAGAAACTCAGTGGGGGTGGGAGGGGCTCAGGAGAGCAGGTGTGGGCCCGACTGACCGTGGATGAAGCGCAGGCTGGGTGCGTACAGCAGGTTTTCCTCCAGGTAATT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:47849028|47849313 hsa-miR-148a-5p 0 0 1
chr3:47849028|47849313 hsa-miR-148a-3p 0 0 1
chr3:47849028|47849313 hsa-miR-130a-5p 0 0 1
chr3:47849028|47849313 hsa-miR-130a-3p 0 0 1
chr3:47849028|47849313 hsa-miR-152-5p 0 0 1
chr3:47849028|47849313 hsa-miR-152-3p 0 0 1
chr3:47849028|47849313 hsa-miR-301a-5p 0 0 1
chr3:47849028|47849313 hsa-miR-301a-3p 0 0 1
chr3:47849028|47849313 hsa-miR-130b-5p 0 0 1
chr3:47849028|47849313 hsa-miR-130b-3p 0 0 1
chr3:47849028|47849313 hsa-miR-370-5p 0 0 1
chr3:47849028|47849313 hsa-miR-370-3p 0 0 1
chr3:47849028|47849313 hsa-miR-148b-5p 0 0 1
chr3:47849028|47849313 hsa-miR-148b-3p 0 0 1
chr3:47849028|47849313 hsa-miR-596 0 1 1
chr3:47849028|47849313 hsa-miR-619-5p 0 0 1
chr3:47849028|47849313 hsa-miR-619-3p 0 0 1
chr3:47849028|47849313 hsa-miR-454-5p 0 0 1
chr3:47849028|47849313 hsa-miR-454-3p 0 0 1
chr3:47849028|47849313 hsa-miR-766-5p 0 0 1
chr3:47849028|47849313 hsa-miR-766-3p 0 0 1
chr3:47849028|47849313 hsa-miR-765 0 1 1
chr3:47849028|47849313 hsa-miR-891a-5p 0 0 1
chr3:47849028|47849313 hsa-miR-891a-3p 0 0 1
chr3:47849028|47849313 hsa-miR-541-5p 0 0 1
chr3:47849028|47849313 hsa-miR-541-3p 0 0 1
chr3:47849028|47849313 hsa-miR-708-5p 0 0 1
chr3:47849028|47849313 hsa-miR-708-3p 0 0 1
chr3:47849028|47849313 hsa-miR-301b-5p 0 0 1
chr3:47849028|47849313 hsa-miR-301b-3p 0 0 1
chr3:47849028|47849313 hsa-miR-1228-5p 0 0 1
chr3:47849028|47849313 hsa-miR-1228-3p 0 0 1
chr3:47849028|47849313 hsa-miR-1200 1 1 1
chr3:47849028|47849313 hsa-miR-1288-5p 0 0 1
chr3:47849028|47849313 hsa-miR-1288-3p 0 0 1
chr3:47849028|47849313 hsa-miR-1825 0 0 1
chr3:47849028|47849313 hsa-miR-671-5p 0 1 1
chr3:47849028|47849313 hsa-miR-1225-3p 1 1 1
chr3:47849028|47849313 hsa-miR-491-5p 0 1 1
chr3:47849028|47849313 hsa-miR-532-3p 1 1 1
chr3:47849028|47849313 hsa-miR-654-5p 0 0 1
chr3:47849028|47849313 hsa-miR-1224-3p 1 0 1
chr3:47849028|47849313 hsa-miR-28-5p 0 0 1
chr3:47849028|47849313 hsa-miR-521 0 0 1
chr3:47849028|47849313 hsa-miR-1260 0 0 1
chr3:47849028|47849313 hsa-miR-1280 0 0 1
chr3:47849028|47849313 hsa-miR-1233 0 0 1
chr3:47849028|47849313 hsa-miR-138 0 0 1
chr3:47849028|47849313 hsa-miR-1260a 1 1 0
chr3:47849028|47849313 hsa-miR-1470 0 1 0
chr3:47849028|47849313 hsa-miR-3142 0 1 0
chr3:47849028|47849313 hsa-miR-3181 0 1 0
chr3:47849028|47849313 hsa-miR-4297 0 1 0
chr3:47849028|47849313 hsa-miR-4277 0 1 0
chr3:47849028|47849313 hsa-miR-3666 0 1 0
chr3:47849028|47849313 hsa-miR-3917 0 1 0
chr3:47849028|47849313 hsa-miR-4487 0 1 0
chr3:47849028|47849313 hsa-miR-4675 0 1 0
chr3:47849028|47849313 hsa-miR-4682 1 1 0
chr3:47849028|47849313 hsa-miR-4689 1 1 0
chr3:47849028|47849313 hsa-miR-4739 1 0 0
chr3:47849028|47849313 hsa-miR-5092 0 1 0
chr3:47849028|47849313 hsa-miR-6069 0 1 0
chr3:47849028|47849313 hsa-miR-6085 0 1 0
chr3:47849028|47849313 hsa-miR-7703 1 1 0
chr3:47849028|47849313 hsa-miR-134-3p 1 0 0
chr3:47849028|47849313 hsa-miR-92a-2-5p 0 1 0
chr3:47849028|47849313 hsa-miR-500b-3p 0 1 0
chr3:47849028|47849313 hsa-miR-3150a-3p 0 1 0
chr3:47849028|47849313 hsa-miR-7106-5p 1 0 0
chr3:47849028|47849313 hsa-miR-6720-5p 0 1 0
chr3:47849028|47849313 hsa-miR-6892-3p 1 0 0
chr3:47849028|47849313 hsa-miR-210-5p 1 0 0
chr3:47849028|47849313 hsa-miR-6089 1 0 0
chr3:47849028|47849313 hsa-miR-191-3p 0 1 0
chr3:47849028|47849313 hsa-miR-6849-3p 1 1 0
chr3:47849028|47849313 hsa-miR-1915-5p 1 0 0
chr3:47849028|47849313 hsa-miR-877-3p 1 0 0
chr3:47849028|47849313 hsa-miR-7109-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6884-3p 1 1 0
chr3:47849028|47849313 hsa-miR-1343-3p 1 0 0
chr3:47849028|47849313 hsa-miR-939-3p 1 1 0
chr3:47849028|47849313 hsa-miR-4763-5p 1 0 0
chr3:47849028|47849313 hsa-miR-4707-3p 1 0 0
chr3:47849028|47849313 hsa-miR-3944-3p 1 1 0
chr3:47849028|47849313 hsa-miR-6803-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6749-5p 1 0 0
chr3:47849028|47849313 hsa-miR-4743-3p 0 1 0
chr3:47849028|47849313 hsa-miR-6769a-3p 0 1 0
chr3:47849028|47849313 hsa-miR-490-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6811-3p 0 1 0
chr3:47849028|47849313 hsa-miR-4687-5p 0 1 0
chr3:47849028|47849313 hsa-miR-6804-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6828-3p 1 1 0
chr3:47849028|47849313 hsa-miR-6887-3p 0 1 0
chr3:47849028|47849313 hsa-miR-6741-3p 1 0 0
chr3:47849028|47849313 hsa-miR-1296-5p 1 0 0
chr3:47849028|47849313 hsa-miR-1914-5p 1 0 0
chr3:47849028|47849313 hsa-miR-6886-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6773-3p 0 1 0
chr3:47849028|47849313 hsa-miR-4749-3p 1 1 0
chr3:47849028|47849313 hsa-miR-6859-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6880-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6802-3p 1 0 0
chr3:47849028|47849313 hsa-miR-3620-3p 0 1 0
chr3:47849028|47849313 hsa-miR-4433a-5p 1 0 0
chr3:47849028|47849313 hsa-miR-4433b-5p 1 0 0
chr3:47849028|47849313 hsa-miR-1249-3p 1 0 0
chr3:47849028|47849313 hsa-miR-3162-3p 1 0 0
chr3:47849028|47849313 hsa-miR-5586-5p 0 1 0
chr3:47849028|47849313 hsa-miR-6813-5p 1 1 0
chr3:47849028|47849313 hsa-miR-11181-3p 1 1 0
chr3:47849028|47849313 hsa-miR-4685-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6780b-5p 0 1 0
chr3:47849028|47849313 hsa-miR-1237-5p 1 0 0
chr3:47849028|47849313 hsa-miR-4725-3p 0 1 0
chr3:47849028|47849313 hsa-miR-6858-5p 1 1 0
chr3:47849028|47849313 hsa-miR-4758-5p 1 0 0
chr3:47849028|47849313 hsa-miR-1199-5p 0 1 0
chr3:47849028|47849313 hsa-miR-6791-5p 1 1 0
chr3:47849028|47849313 hsa-miR-6727-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6893-3p 0 1 0
chr3:47849028|47849313 hsa-miR-6784-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6862-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6805-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6810-3p 1 0 0
chr3:47849028|47849313 hsa-miR-125a-5p 0 1 0
chr3:47849028|47849313 hsa-miR-3130-5p 0 1 0
chr3:47849028|47849313 hsa-miR-3622a-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6511b-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6751-3p 1 1 0
chr3:47849028|47849313 hsa-miR-6823-3p 1 1 0
chr3:47849028|47849313 hsa-miR-6783-3p 0 1 0
chr3:47849028|47849313 hsa-miR-3622b-3p 1 0 0
chr3:47849028|47849313 hsa-miR-6807-3p 1 1 0
chr3:47849028|47849313 hsa-miR-3117-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:47849028|47849313
ORF Type ORF1
Protein Length 35
Nucleotide Length 108
Protein Sequence MCGGPTAPSHRLEVTETQWGWEGLRRAGVGPTDRG
Nucleotide Sequence ATGTGTGGTGGACCTACAGCCCCTAGCCACAGGCTGGAGGTGACAGAAACTCAGTGGGGGTGGGAGGGGCTCAGGAGAGCAGGTGTGGGCCCGACTGACCGTGGATGA
CircID chr3:47849028|47849313
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MFSENCLMSPRETECVVDLQPLATGWR
Nucleotide Sequence ATGTTCTCTGAGAACTGCTTGATGAGTCCTAGGGAGACAGAATGTGTGGTGGACCTACAGCCCCTAGCCACAGGCTGGAGGTGA
CircID chr3:47849028|47849313
ORF Type ORF3
Protein Length 63
Nucleotide Length 189
Protein Sequence MSFCHLQPVARGCRSTTHSVSLGLIKQFSENIYEAFLVGKPSDCTLASAQCNEYSEEEELVKG
Nucleotide Sequence CTGAGTTTCTGTCACCTCCAGCCTGTGGCTAGGGGCTGTAGGTCCACCACACATTCTGTCTCCCTAGGACTCATCAAGCAGTTCTCAGAGAACATTTATGAGGCCTTCCTGGTGGGGAAGCCCTCGGACTGCACCCTGGCCTCCGCCCAGTGCAACGAGTACAGTGAGGAGGAGGAGCTGGTGAAGGGC
CircID chr3:47849028|47849313
ORF Type ORF4
Protein Length 28
Nucleotide Length 87
Protein Sequence MRPSWWGSPRTAPWPPPSATSTVRRRSW
Nucleotide Sequence ATGAGGCCTTCCTGGTGGGGAAGCCCTCGGACTGCACCCTGGCCTCCGCCCAGTGCAACGAGTACAGTGAGGAGGAGGAGCTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab