CircRNA Information

General Information
circRNA Basic Information
CircID chr3:48423875|48424054
Strand +
CircType exon
Host Gene ENSG00000164050.11;
Algorism CIRI2;
Sequence CCGGGCCCTGTGGCCGCCCGACCCCCAAGCTGCCTTCTCCTATGAGGAGACAGCCAAGCTGGCAGTGGGCCGCCTCTCCGAGTACAGCCACCACTTCGTGAGTGCCTTTGCACGTGGGGCCAGCGCCTACTTCCTGTTCCTGCGGCGGGACCTGCAGGCTCAGTCTAGAGCTTTTCGTGC
circRNA Expression in different cancers

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circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:48423875|48424054 hsa-miR-19a-5p 0 0 1
chr3:48423875|48424054 hsa-miR-19a-3p 0 0 1
chr3:48423875|48424054 hsa-miR-527 0 0 1
chr3:48423875|48424054 hsa-miR-506-5p 0 0 1
chr3:48423875|48424054 hsa-miR-506-3p 0 0 1
chr3:48423875|48424054 hsa-miR-596 0 1 1
chr3:48423875|48424054 hsa-miR-626 0 0 1
chr3:48423875|48424054 hsa-miR-647 0 0 1
chr3:48423875|48424054 hsa-miR-662 0 0 1
chr3:48423875|48424054 hsa-miR-657 0 0 1
chr3:48423875|48424054 hsa-miR-873-5p 0 0 1
chr3:48423875|48424054 hsa-miR-873-3p 0 0 1
chr3:48423875|48424054 hsa-miR-1202 0 0 1
chr3:48423875|48424054 hsa-miR-1205 0 1 1
chr3:48423875|48424054 hsa-miR-1275 0 0 1
chr3:48423875|48424054 hsa-miR-518a-5p 0 0 1
chr3:48423875|48424054 hsa-miR-886-5p 0 0 1
chr3:48423875|48424054 hsa-miR-220c 0 0 1
chr3:48423875|48424054 hsa-miR-124 0 0 1
chr3:48423875|48424054 hsa-miR-19b 0 0 1
chr3:48423875|48424054 hsa-miR-151-3p 0 0 1
chr3:48423875|48424054 hsa-miR-636 1 0 0
chr3:48423875|48424054 hsa-miR-1269a 0 1 0
chr3:48423875|48424054 hsa-miR-4298 1 0 0
chr3:48423875|48424054 hsa-miR-3621 1 0 0
chr3:48423875|48424054 hsa-miR-4449 1 0 0
chr3:48423875|48424054 hsa-miR-4453 0 1 0
chr3:48423875|48424054 hsa-miR-4507 1 0 0
chr3:48423875|48424054 hsa-miR-1269b 0 1 0
chr3:48423875|48424054 hsa-miR-4538 0 1 0
chr3:48423875|48424054 hsa-miR-4706 0 1 0
chr3:48423875|48424054 hsa-miR-4741 1 0 0
chr3:48423875|48424054 hsa-miR-6075 0 1 0
chr3:48423875|48424054 hsa-miR-6081 1 0 0
chr3:48423875|48424054 hsa-miR-7704 1 1 0
chr3:48423875|48424054 hsa-miR-8072 1 0 0
chr3:48423875|48424054 hsa-miR-4433b-3p 1 0 0
chr3:48423875|48424054 hsa-miR-4665-3p 1 0 0
chr3:48423875|48424054 hsa-miR-6822-3p 1 0 0
chr3:48423875|48424054 hsa-miR-4687-3p 1 0 0
chr3:48423875|48424054 hsa-miR-139-3p 1 0 0
chr3:48423875|48424054 hsa-miR-4695-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6746-5p 1 0 0
chr3:48423875|48424054 hsa-miR-874-5p 0 1 0
chr3:48423875|48424054 hsa-miR-8069 1 0 0
chr3:48423875|48424054 hsa-miR-7845-5p 0 1 0
chr3:48423875|48424054 hsa-miR-6770-5p 0 1 0
chr3:48423875|48424054 hsa-miR-2467-3p 1 0 0
chr3:48423875|48424054 hsa-miR-30c-2-3p 0 1 0
chr3:48423875|48424054 hsa-miR-885-3p 1 0 0
chr3:48423875|48424054 hsa-miR-296-3p 1 0 0
chr3:48423875|48424054 hsa-miR-6824-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6886-5p 0 1 0
chr3:48423875|48424054 hsa-miR-4798-3p 0 1 0
chr3:48423875|48424054 hsa-miR-4758-3p 0 1 0
chr3:48423875|48424054 hsa-miR-6857-3p 0 1 0
chr3:48423875|48424054 hsa-miR-517-5p 0 1 0
chr3:48423875|48424054 hsa-miR-6743-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6752-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6756-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6803-5p 1 1 0
chr3:48423875|48424054 hsa-miR-6851-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6836-5p 1 0 0
chr3:48423875|48424054 hsa-miR-4632-5p 1 1 0
chr3:48423875|48424054 hsa-miR-6848-5p 1 0 0
chr3:48423875|48424054 hsa-miR-6511b-5p 1 0 0
chr3:48423875|48424054 hsa-miR-1199-5p 0 1 0
chr3:48423875|48424054 hsa-miR-324-3p 0 1 0
chr3:48423875|48424054 hsa-miR-4747-5p 0 1 0
chr3:48423875|48424054 hsa-miR-3928-5p 1 1 0
chr3:48423875|48424054 hsa-miR-6751-3p 0 1 0
chr3:48423875|48424054 hsa-miR-10394-5p 1 1 0
chr3:48423875|48424054 hsa-miR-99b-3p 1 0 0
chr3:48423875|48424054 hsa-miR-1301-5p 0 1 0
chr3:48423875|48424054 hsa-miR-6806-3p 1 0 0
chr3:48423875|48424054 hsa-miR-151a-3p 0 1 0
chr3:48423875|48424054 hsa-miR-6502-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:48423875|48424054
ORF Type ORF1
Protein Length 57
Nucleotide Length 171
Protein Sequence MWPPDPQAAFSYEETAKLAVGRLSEYSHHFVSAFARGASAYFLFLRRDLQAQSRAFR
Nucleotide Sequence CTGTGGCCGCCCGACCCCCAAGCTGCCTTCTCCTATGAGGAGACAGCCAAGCTGGCAGTGGGCCGCCTCTCCGAGTACAGCCACCACTTCGTGAGTGCCTTTGCACGTGGGGCCAGCGCCTACTTCCTGTTCCTGCGGCGGGACCTGCAGGCTCAGTCTAGAGCTTTTCGT
CircID chr3:48423875|48424054
ORF Type ORF2
Protein Length 27
Nucleotide Length 84
Protein Sequence MAPRAKALTKWWLYSERRPTASLAVSS
Nucleotide Sequence CTGGCCCCACGTGCAAAGGCACTCACGAAGTGGTGGCTGTACTCGGAGAGGCGGCCCACTGCCAGCTTGGCTGTCTCCTCATAG
CircID chr3:48423875|48424054
ORF Type ORF3
Protein Length 54
Nucleotide Length 162
Protein Sequence MSLQVPPQEQEVGAGPTCKGTHEVVAVLGEAAHCQLGCLLIGEGSLGVGRPQGP
Nucleotide Sequence CTGAGCCTGCAGGTCCCGCCGCAGGAACAGGAAGTAGGCGCTGGCCCCACGTGCAAAGGCACTCACGAAGTGGTGGCTGTACTCGGAGAGGCGGCCCACTGCCAGCTTGGCTGTCTCCTCATAGGAGAAGGCAGCTTGGGGGTCGGGCGGCCACAGGGCCCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab