CircRNA Information

General Information
circRNA Basic Information
CircID chr3:48469514|48469843
Strand -
CircType exon
Host Gene ENSG00000164054.14;
Algorism CIRI2;
Sequence TTGGAGGCTGAGGATAAGGGGCATGCACCACAGTGGTGGATGTGGTGGTGGTGACAACCGCTGCAAAGAGAATTCCAGTCAGGACCCTCCTCCATCTCCCCAGGTCTTGAGAGCCAGGCTTGCCACCCATCCCTCCAGCTTAGCCAAAGCAGGGCCTGGTCAGCTTCCCTTACCACCCCAGGGGGTCACAGTGGGGCAGGGTGGGCACGCTTACGACGTGGTCGGCGGCACGTCTTGTAAAGGCAGCAGCAGGAGCAGGTGAAGCAGATGATGATAGTGACGACAGACAGCACAAAGATGGTCAGGCCAACGGCCAAGGTCGCTCCGAAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:48469514|48469843 hsa-miR-31-5p 0 0 1
chr3:48469514|48469843 hsa-miR-31-3p 0 0 1
chr3:48469514|48469843 hsa-miR-197-5p 0 0 1
chr3:48469514|48469843 hsa-miR-197-3p 0 0 1
chr3:48469514|48469843 hsa-miR-149-5p 0 0 1
chr3:48469514|48469843 hsa-miR-149-3p 0 0 1
chr3:48469514|48469843 hsa-miR-370-5p 0 0 1
chr3:48469514|48469843 hsa-miR-370-3p 0 0 1
chr3:48469514|48469843 hsa-miR-412-5p 0 0 1
chr3:48469514|48469843 hsa-miR-412-3p 0 0 1
chr3:48469514|48469843 hsa-miR-591 0 0 1
chr3:48469514|48469843 hsa-miR-608 1 1 1
chr3:48469514|48469843 hsa-miR-626 0 0 1
chr3:48469514|48469843 hsa-miR-631 0 0 1
chr3:48469514|48469843 hsa-miR-1301-5p 0 0 1
chr3:48469514|48469843 hsa-miR-1301-3p 0 0 1
chr3:48469514|48469843 hsa-miR-765 0 0 1
chr3:48469514|48469843 hsa-miR-760 1 0 1
chr3:48469514|48469843 hsa-miR-939-5p 0 0 1
chr3:48469514|48469843 hsa-miR-939-3p 0 0 1
chr3:48469514|48469843 hsa-miR-1291 0 0 1
chr3:48469514|48469843 hsa-miR-1293 0 1 1
chr3:48469514|48469843 hsa-miR-1306-5p 0 0 1
chr3:48469514|48469843 hsa-miR-1306-3p 0 0 1
chr3:48469514|48469843 hsa-miR-513c-5p 0 0 1
chr3:48469514|48469843 hsa-miR-513c-3p 0 0 1
chr3:48469514|48469843 hsa-miR-331-3p 0 0 1
chr3:48469514|48469843 hsa-miR-324-3p 0 0 1
chr3:48469514|48469843 hsa-miR-342-5p 0 0 1
chr3:48469514|48469843 hsa-miR-220b 0 0 1
chr3:48469514|48469843 hsa-miR-218 0 0 1
chr3:48469514|48469843 hsa-miR-453 0 0 1
chr3:48469514|48469843 hsa-miR-346 1 0 0
chr3:48469514|48469843 hsa-miR-637 1 0 0
chr3:48469514|48469843 hsa-miR-661 1 0 0
chr3:48469514|48469843 hsa-miR-2113 0 1 0
chr3:48469514|48469843 hsa-miR-892b 1 0 0
chr3:48469514|48469843 hsa-miR-1181 1 0 0
chr3:48469514|48469843 hsa-miR-1182 0 1 0
chr3:48469514|48469843 hsa-miR-1299 0 1 0
chr3:48469514|48469843 hsa-miR-4318 0 1 0
chr3:48469514|48469843 hsa-miR-4292 1 0 0
chr3:48469514|48469843 hsa-miR-3652 1 0 0
chr3:48469514|48469843 hsa-miR-3135b 0 1 0
chr3:48469514|48469843 hsa-miR-4478 1 0 0
chr3:48469514|48469843 hsa-miR-2392 1 0 0
chr3:48469514|48469843 hsa-miR-4534 1 1 0
chr3:48469514|48469843 hsa-miR-4651 1 1 0
chr3:48469514|48469843 hsa-miR-4656 1 0 0
chr3:48469514|48469843 hsa-miR-4686 1 1 0
chr3:48469514|48469843 hsa-miR-4739 1 0 0
chr3:48469514|48469843 hsa-miR-5572 1 0 0
chr3:48469514|48469843 hsa-miR-6127 1 0 0
chr3:48469514|48469843 hsa-miR-8089 1 1 0
chr3:48469514|48469843 hsa-miR-9500 0 1 0
chr3:48469514|48469843 hsa-miR-153-5p 0 1 0
chr3:48469514|48469843 hsa-miR-671-5p 1 0 0
chr3:48469514|48469843 hsa-miR-212-5p 0 1 0
chr3:48469514|48469843 hsa-miR-3150a-3p 0 1 0
chr3:48469514|48469843 hsa-miR-7106-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6825-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6728-5p 1 0 0
chr3:48469514|48469843 hsa-miR-7851-3p 0 1 0
chr3:48469514|48469843 hsa-miR-6515-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6757-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6746-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6762-3p 1 0 0
chr3:48469514|48469843 hsa-miR-3189-5p 1 1 0
chr3:48469514|48469843 hsa-miR-1915-5p 1 0 0
chr3:48469514|48469843 hsa-miR-659-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6796-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6868-3p 1 0 0
chr3:48469514|48469843 hsa-miR-2467-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6782-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6765-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6774-3p 0 1 0
chr3:48469514|48469843 hsa-miR-6852-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6772-3p 1 1 0
chr3:48469514|48469843 hsa-miR-1226-5p 1 0 0
chr3:48469514|48469843 hsa-miR-4793-5p 0 1 0
chr3:48469514|48469843 hsa-miR-1909-5p 1 0 0
chr3:48469514|48469843 hsa-miR-1229-5p 1 0 0
chr3:48469514|48469843 hsa-miR-4640-5p 1 0 0
chr3:48469514|48469843 hsa-miR-296-3p 1 0 0
chr3:48469514|48469843 hsa-miR-378a-5p 0 1 0
chr3:48469514|48469843 hsa-miR-4733-3p 0 1 0
chr3:48469514|48469843 hsa-miR-6824-5p 1 1 0
chr3:48469514|48469843 hsa-miR-4640-3p 1 0 0
chr3:48469514|48469843 hsa-miR-5010-5p 0 1 0
chr3:48469514|48469843 hsa-miR-181b-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6825-3p 1 0 0
chr3:48469514|48469843 hsa-miR-664b-5p 1 0 0
chr3:48469514|48469843 hsa-miR-3120-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6813-3p 0 1 0
chr3:48469514|48469843 hsa-miR-6828-3p 1 0 0
chr3:48469514|48469843 hsa-miR-4758-3p 1 1 0
chr3:48469514|48469843 hsa-miR-6752-3p 0 1 0
chr3:48469514|48469843 hsa-miR-6837-3p 1 1 0
chr3:48469514|48469843 hsa-miR-4632-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6746-3p 1 0 0
chr3:48469514|48469843 hsa-miR-3620-3p 0 1 0
chr3:48469514|48469843 hsa-miR-181a-5p 0 1 0
chr3:48469514|48469843 hsa-miR-4787-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6885-3p 1 1 0
chr3:48469514|48469843 hsa-miR-4763-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6769b-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6778-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6812-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6865-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6870-5p 1 1 0
chr3:48469514|48469843 hsa-miR-1343-5p 1 0 0
chr3:48469514|48469843 hsa-miR-5001-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6737-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6756-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6803-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6819-5p 1 1 0
chr3:48469514|48469843 hsa-miR-7107-5p 1 0 0
chr3:48469514|48469843 hsa-miR-1249-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6722-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6763-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6779-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6797-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6754-3p 1 1 0
chr3:48469514|48469843 hsa-miR-3620-5p 1 0 0
chr3:48469514|48469843 hsa-miR-5196-5p 1 0 0
chr3:48469514|48469843 hsa-miR-328-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6795-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6848-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6858-5p 1 0 0
chr3:48469514|48469843 hsa-miR-6887-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6799-3p 0 1 0
chr3:48469514|48469843 hsa-miR-1271-3p 1 0 0
chr3:48469514|48469843 hsa-miR-4700-5p 0 1 0
chr3:48469514|48469843 hsa-miR-4646-5p 1 0 0
chr3:48469514|48469843 hsa-miR-4667-5p 0 1 0
chr3:48469514|48469843 hsa-miR-6791-5p 1 1 0
chr3:48469514|48469843 hsa-miR-6753-3p 1 0 0
chr3:48469514|48469843 hsa-miR-6893-3p 1 1 0
chr3:48469514|48469843 hsa-miR-6810-3p 0 1 0
chr3:48469514|48469843 hsa-miR-6876-3p 1 1 0
chr3:48469514|48469843 hsa-miR-6781-3p 1 1 0
chr3:48469514|48469843 hsa-miR-664a-5p 1 0 0
chr3:48469514|48469843 hsa-miR-3622b-3p 1 0 0
chr3:48469514|48469843 hsa-miR-4676-3p 1 0 0
chr3:48469514|48469843 hsa-miR-514b-5p 0 1 0
chr3:48469514|48469843 hsa-miR-181d-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:48469514|48469843
ORF Type ORF1
Protein Length 59
Nucleotide Length 180
Protein Sequence MQREFQSGPSSISPGLESQACHPSLQLSQSRAWSASLTTPGGHSGAGWARLRRGRRHVL
Nucleotide Sequence CTGCAAAGAGAATTCCAGTCAGGACCCTCCTCCATCTCCCCAGGTCTTGAGAGCCAGGCTTGCCACCCATCCCTCCAGCTTAGCCAAAGCAGGGCCTGGTCAGCTTCCCTTACCACCCCAGGGGGTCACAGTGGGGCAGGGTGGGCACGCTTACGACGTGGTCGGCGGCACGTCTTGTAA
CircID chr3:48469514|48469843
ORF Type ORF2
Protein Length 84
Nucleotide Length 255
Protein Sequence MRIRGMHHSGGCGGGDNRCKENSSQDPPPSPQVLRARLATHPSSLAKAGPGQLPLPPQGVTVGQGGHAYDVVGGTSCKGSSRSR
Nucleotide Sequence CTGAGGATAAGGGGCATGCACCACAGTGGTGGATGTGGTGGTGGTGACAACCGCTGCAAAGAGAATTCCAGTCAGGACCCTCCTCCATCTCCCCAGGTCTTGAGAGCCAGGCTTGCCACCCATCCCTCCAGCTTAGCCAAAGCAGGGCCTGGTCAGCTTCCCTTACCACCCCAGGGGGTCACAGTGGGGCAGGGTGGGCACGCTTACGACGTGGTCGGCGGCACGTCTTGTAAAGGCAGCAGCAGGAGCAGGTGA
CircID chr3:48469514|48469843
ORF Type ORF3
Protein Length 58
Nucleotide Length 174
Protein Sequence MVSFPYHPRGSQWGRVGTLTTWSAARLVKAAAGAGEADDDSDDRQHKDGQANGQGRSE
Nucleotide Sequence CTGGTCAGCTTCCCTTACCACCCCAGGGGGTCACAGTGGGGCAGGGTGGGCACGCTTACGACGTGGTCGGCGGCACGTCTTGTAAAGGCAGCAGCAGGAGCAGGTGAAGCAGATGATGATAGTGACGACAGACAGCACAAAGATGGTCAGGCCAACGGCCAAGGTCGCTCCGAA
CircID chr3:48469514|48469843
ORF Type ORF4
Protein Length 26
Nucleotide Length 78
Protein Sequence MEFSLQRLSPPPHPPLWCMPLILSLQ
Nucleotide Sequence CTGGAATTCTCTTTGCAGCGGTTGTCACCACCACCACATCCACCACTGTGGTGCATGCCCCTTATCCTCAGCCTCCAA
CircID chr3:48469514|48469843
ORF Type ORF5
Protein Length 43
Nucleotide Length 132
Protein Sequence MAVGLTIFVLSVVTIIICFTCSCCCLYKTCRRPRRKRAHPAPL
Nucleotide Sequence TTGGCCGTTGGCCTGACCATCTTTGTGCTGTCTGTCGTCACTATCATCATCTGCTTCACCTGCTCCTGCTGCTGCCTTTACAAGACGTGCCGCCGACCACGTCGTAAGCGTGCCCACCCTGCCCCACTGTGA
CircID chr3:48469514|48469843
ORF Type ORF6
Protein Length 50
Nucleotide Length 150
Protein Sequence MLWLSWRDGWQAWLSRPGEMEEGPDWNSLCSGCHHHHIHHCGACPLSSAS
Nucleotide Sequence CTGCTTTGGCTAAGCTGGAGGGATGGGTGGCAAGCCTGGCTCTCAAGACCTGGGGAGATGGAGGAGGGTCCTGACTGGAATTCTCTTTGCAGCGGTTGTCACCACCACCACATCCACCACTGTGGTGCATGCCCCTTATCCTCAGCCTCC
CircID chr3:48469514|48469843
ORF Type ORF7
Protein Length 41
Nucleotide Length 126
Protein Sequence MCCLSSLSSSASPAPAAAFTRRAADHVVSVPTLPHCDPLGW
Nucleotide Sequence TTGTGCTGTCTGTCGTCACTATCATCATCTGCTTCACCTGCTCCTGCTGCTGCCTTTACAAGACGTGCCGCCGACCACGTCGTAAGCGTGCCCACCCTGCCCCACTGTGACCCCCTGGGGTGGTAA
CircID chr3:48469514|48469843
ORF Type ORF8
Protein Length 43
Nucleotide Length 129
Protein Sequence MGGKPGSQDLGRWRRVLTGILFAAVVTTTTSTTVVHAPYPQPP
Nucleotide Sequence ATGGGTGGCAAGCCTGGCTCTCAAGACCTGGGGAGATGGAGGAGGGTCCTGACTGGAATTCTCTTTGCAGCGGTTGTCACCACCACCACATCCACCACTGTGGTGCATGCCCCTTATCCTCAGCCTCCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab