CircRNA Information

General Information
circRNA Basic Information
CircID chr3:48604742|48605856
Strand -
CircType exon
Host Gene ENSG00000010256.9;
Algorism CIRI2;
Sequence CTCCTTCTTGAAAGCCAGATGCTCCAAAAAGTAGCCTGCCCCATTATTCTTCTCAGTCTCAAAACGGCTGCCAACATCAATCCACACTCCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:48604742|48605856 hsa-miR-34a-5p 0 0 1
chr3:48604742|48605856 hsa-miR-34a-3p 0 0 1
chr3:48604742|48605856 hsa-miR-122-5p 0 0 1
chr3:48604742|48605856 hsa-miR-122-3p 0 0 1
chr3:48604742|48605856 hsa-miR-149-5p 0 0 1
chr3:48604742|48605856 hsa-miR-149-3p 0 0 1
chr3:48604742|48605856 hsa-miR-186-5p 0 0 1
chr3:48604742|48605856 hsa-miR-186-3p 0 0 1
chr3:48604742|48605856 hsa-miR-449a 0 0 1
chr3:48604742|48605856 hsa-miR-498-5p 0 0 1
chr3:48604742|48605856 hsa-miR-498-3p 0 0 1
chr3:48604742|48605856 hsa-miR-449b-5p 0 0 1
chr3:48604742|48605856 hsa-miR-449b-3p 0 0 1
chr3:48604742|48605856 hsa-miR-874-5p 0 0 1
chr3:48604742|48605856 hsa-miR-874-3p 0 0 1
chr3:48604742|48605856 hsa-miR-1234-3p 0 0 1
chr3:48604742|48605856 hsa-miR-1253 0 0 1
chr3:48604742|48605856 hsa-miR-1234 0 0 1
chr3:48604742|48605856 hsa-miR-486-3p 0 0 1
chr3:48604742|48605856 hsa-miR-885-3p 0 0 1
chr3:48604742|48605856 hsa-miR-146b-3p 0 0 1
chr3:48604742|48605856 hsa-miR-574-5p 0 0 1
chr3:48604742|48605856 hsa-miR-34c-5p 0 0 1
chr3:48604742|48605856 hsa-miR-1300 0 0 1
chr3:48604742|48605856 hsa-miR-768-5p 0 0 1
chr3:48604742|48605856 hsa-miR-1303 1 0 0
chr3:48604742|48605856 hsa-miR-1269a 1 0 0
chr3:48604742|48605856 hsa-miR-2861 1 0 0
chr3:48604742|48605856 hsa-miR-3141 1 0 0
chr3:48604742|48605856 hsa-miR-3147 1 0 0
chr3:48604742|48605856 hsa-miR-3185 1 0 0
chr3:48604742|48605856 hsa-miR-4298 1 0 0
chr3:48604742|48605856 hsa-miR-4260 1 0 0
chr3:48604742|48605856 hsa-miR-4463 1 0 0
chr3:48604742|48605856 hsa-miR-3689c 1 0 0
chr3:48604742|48605856 hsa-miR-4488 1 0 0
chr3:48604742|48605856 hsa-miR-4499 1 1 0
chr3:48604742|48605856 hsa-miR-1269b 1 0 0
chr3:48604742|48605856 hsa-miR-4648 1 0 0
chr3:48604742|48605856 hsa-miR-4658 1 0 0
chr3:48604742|48605856 hsa-miR-4688 1 0 0
chr3:48604742|48605856 hsa-miR-4689 1 1 0
chr3:48604742|48605856 hsa-miR-4736 1 0 0
chr3:48604742|48605856 hsa-miR-4739 1 0 0
chr3:48604742|48605856 hsa-miR-5090 1 0 0
chr3:48604742|48605856 hsa-miR-5192 1 0 0
chr3:48604742|48605856 hsa-miR-6081 1 0 0
chr3:48604742|48605856 hsa-miR-6088 1 0 0
chr3:48604742|48605856 hsa-miR-8052 1 0 0
chr3:48604742|48605856 hsa-miR-4665-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6747-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6765-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6861-5p 1 0 0
chr3:48604742|48605856 hsa-miR-1227-5p 1 0 0
chr3:48604742|48605856 hsa-miR-1301-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6890-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6727-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6721-5p 1 1 0
chr3:48604742|48605856 hsa-miR-3151-5p 1 0 0
chr3:48604742|48605856 hsa-miR-1292-5p 1 0 0
chr3:48604742|48605856 hsa-miR-3180-3p 1 0 0
chr3:48604742|48605856 hsa-miR-185-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6732-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6827-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6874-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6810-5p 1 0 0
chr3:48604742|48605856 hsa-miR-30b-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6740-5p 1 0 0
chr3:48604742|48605856 hsa-miR-3944-3p 1 0 0
chr3:48604742|48605856 hsa-miR-1229-5p 1 0 0
chr3:48604742|48605856 hsa-miR-4640-5p 1 0 0
chr3:48604742|48605856 hsa-miR-4787-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6507-5p 0 1 0
chr3:48604742|48605856 hsa-miR-194-3p 1 0 0
chr3:48604742|48605856 hsa-miR-4740-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6892-5p 0 1 0
chr3:48604742|48605856 hsa-miR-423-5p 1 0 0
chr3:48604742|48605856 hsa-miR-873-3p 1 1 0
chr3:48604742|48605856 hsa-miR-6868-5p 0 1 0
chr3:48604742|48605856 hsa-miR-221-5p 0 1 0
chr3:48604742|48605856 hsa-miR-10400-5p 1 0 0
chr3:48604742|48605856 hsa-miR-1207-5p 1 0 0
chr3:48604742|48605856 hsa-miR-3689b-3p 1 0 0
chr3:48604742|48605856 hsa-miR-4763-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6775-5p 1 0 0
chr3:48604742|48605856 hsa-miR-3180 1 0 0
chr3:48604742|48605856 hsa-miR-6726-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6743-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6752-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6803-5p 1 0 0
chr3:48604742|48605856 hsa-miR-7107-5p 1 0 0
chr3:48604742|48605856 hsa-miR-7110-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6751-5p 1 1 0
chr3:48604742|48605856 hsa-miR-6779-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6780a-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6879-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6780b-5p 1 0 0
chr3:48604742|48605856 hsa-miR-328-5p 1 0 0
chr3:48604742|48605856 hsa-miR-3689a-3p 1 0 0
chr3:48604742|48605856 hsa-miR-4725-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6858-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6883-5p 1 0 0
chr3:48604742|48605856 hsa-miR-3199 1 0 0
chr3:48604742|48605856 hsa-miR-6856-5p 1 0 0
chr3:48604742|48605856 hsa-miR-4646-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6750-5p 0 1 0
chr3:48604742|48605856 hsa-miR-6790-5p 1 0 0
chr3:48604742|48605856 hsa-miR-6753-3p 1 0 0
chr3:48604742|48605856 hsa-miR-6884-5p 1 1 0
chr3:48604742|48605856 hsa-miR-664a-5p 1 0 0
chr3:48604742|48605856 hsa-miR-10522-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:48604742|48605856
ORF Type ORF1
Protein Length 25
Nucleotide Length 75
Protein Sequence MLQKVACPIILLSLKTAANINPHSH
Nucleotide Sequence ATGCTCCAAAAAGTAGCCTGCCCCATTATTCTTCTCAGTCTCAAAACGGCTGCCAACATCAATCCACACTCCCAC
CircID chr3:48604742|48605856
ORF Type ORF2
Protein Length 26
Nucleotide Length 78
Protein Sequence MMLAAVLRLRRIMGQATFWSIWLSRR
Nucleotide Sequence TTGATGTTGGCAGCCGTTTTGAGACTGAGAAGAATAATGGGGCAGGCTACTTTTTGGAGCATCTGGCTTTCAAGAAGG
CircID chr3:48604742|48605856
ORF Type ORF2
Protein Length 37
Nucleotide Length 111
Protein Sequence MMLAAVLRLRRIMGQATFWSIWLSREQRIGLAVPWRR
Nucleotide Sequence TTGATGTTGGCAGCCGTTTTGAGACTGAGAAGAATAATGGGGCAGGCTACTTTTTGGAGCATCTGGCTTTCAAGGGAACAAAGAATCGGCCTGGCAGTGCCCTGGAGAAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab