CircRNA Information

General Information
circRNA Basic Information
CircID chr3:48674063|48674218
Strand +
CircType exon
Host Gene ENSG00000213672.6;
Algorism CIRI2;
Sequence CCCCATCCCCACCCCTCCTGGTCTGTATCCTGGGCCTCAGCAAGCCATGCCCCTGGGGTGAGGGGAGGCATCTCCCACCAGCTCTATTCTTTGCCTTAGCTTTGCAGTGAGTGCTGCTCATGTCCTCCCCTCCACCCGCACATGGGGGTCGCTGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:48674063|48674218 hsa-miR-15a-5p 0 0 1
chr3:48674063|48674218 hsa-miR-15a-3p 0 0 1
chr3:48674063|48674218 hsa-miR-15b-5p 0 0 1
chr3:48674063|48674218 hsa-miR-15b-3p 0 0 1
chr3:48674063|48674218 hsa-miR-186-5p 0 0 1
chr3:48674063|48674218 hsa-miR-186-3p 0 0 1
chr3:48674063|48674218 hsa-miR-195-5p 0 0 1
chr3:48674063|48674218 hsa-miR-195-3p 0 0 1
chr3:48674063|48674218 hsa-miR-135b-5p 0 0 1
chr3:48674063|48674218 hsa-miR-135b-3p 0 0 1
chr3:48674063|48674218 hsa-miR-424-5p 0 0 1
chr3:48674063|48674218 hsa-miR-424-3p 0 0 1
chr3:48674063|48674218 hsa-miR-497-5p 0 0 1
chr3:48674063|48674218 hsa-miR-497-3p 0 0 1
chr3:48674063|48674218 hsa-miR-527 0 0 1
chr3:48674063|48674218 hsa-miR-506-5p 0 0 1
chr3:48674063|48674218 hsa-miR-506-3p 0 0 1
chr3:48674063|48674218 hsa-miR-608 0 1 1
chr3:48674063|48674218 hsa-miR-541-5p 0 0 1
chr3:48674063|48674218 hsa-miR-541-3p 0 0 1
chr3:48674063|48674218 hsa-miR-147b-5p 0 0 1
chr3:48674063|48674218 hsa-miR-147b-3p 0 0 1
chr3:48674063|48674218 hsa-miR-665 0 1 1
chr3:48674063|48674218 hsa-miR-491-5p 0 0 1
chr3:48674063|48674218 hsa-miR-885-3p 0 0 1
chr3:48674063|48674218 hsa-miR-654-5p 0 0 1
chr3:48674063|48674218 hsa-miR-628-5p 0 0 1
chr3:48674063|48674218 hsa-miR-518a-5p 0 0 1
chr3:48674063|48674218 hsa-miR-16 0 0 1
chr3:48674063|48674218 hsa-miR-138 0 0 1
chr3:48674063|48674218 hsa-miR-124 0 0 1
chr3:48674063|48674218 hsa-miR-135a 0 0 1
chr3:48674063|48674218 hsa-miR-886-3p 0 0 1
chr3:48674063|48674218 hsa-miR-1268a 1 0 0
chr3:48674063|48674218 hsa-miR-3197 1 0 0
chr3:48674063|48674218 hsa-miR-4281 1 0 0
chr3:48674063|48674218 hsa-miR-3714 1 0 0
chr3:48674063|48674218 hsa-miR-3945 1 0 0
chr3:48674063|48674218 hsa-miR-1268b 1 0 0
chr3:48674063|48674218 hsa-miR-4651 0 1 0
chr3:48674063|48674218 hsa-miR-4688 1 0 0
chr3:48674063|48674218 hsa-miR-5194 0 1 0
chr3:48674063|48674218 hsa-miR-5787 1 0 0
chr3:48674063|48674218 hsa-miR-6165 1 0 0
chr3:48674063|48674218 hsa-miR-150-3p 1 0 0
chr3:48674063|48674218 hsa-miR-93-3p 1 0 0
chr3:48674063|48674218 hsa-miR-92a-2-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6765-5p 1 0 0
chr3:48674063|48674218 hsa-miR-6836-3p 0 1 0
chr3:48674063|48674218 hsa-miR-6825-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6857-5p 0 1 0
chr3:48674063|48674218 hsa-miR-4708-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6089 1 0 0
chr3:48674063|48674218 hsa-miR-6880-5p 0 1 0
chr3:48674063|48674218 hsa-miR-7847-3p 0 1 0
chr3:48674063|48674218 hsa-miR-7160-5p 1 1 0
chr3:48674063|48674218 hsa-miR-6727-5p 1 0 0
chr3:48674063|48674218 hsa-miR-6798-5p 1 0 0
chr3:48674063|48674218 hsa-miR-6881-5p 1 0 0
chr3:48674063|48674218 hsa-miR-2467-3p 1 0 0
chr3:48674063|48674218 hsa-miR-6782-5p 0 1 0
chr3:48674063|48674218 hsa-miR-5008-5p 1 1 0
chr3:48674063|48674218 hsa-miR-4640-5p 1 0 0
chr3:48674063|48674218 hsa-miR-30c-2-3p 0 1 0
chr3:48674063|48674218 hsa-miR-6778-3p 0 1 0
chr3:48674063|48674218 hsa-miR-6859-3p 0 1 0
chr3:48674063|48674218 hsa-miR-4649-3p 1 0 0
chr3:48674063|48674218 hsa-miR-5004-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6734-3p 0 1 0
chr3:48674063|48674218 hsa-miR-6503-3p 1 0 0
chr3:48674063|48674218 hsa-miR-6816-5p 1 0 0
chr3:48674063|48674218 hsa-miR-6775-5p 1 0 0
chr3:48674063|48674218 hsa-miR-6743-5p 1 1 0
chr3:48674063|48674218 hsa-miR-6756-5p 1 1 0
chr3:48674063|48674218 hsa-miR-6803-5p 1 1 0
chr3:48674063|48674218 hsa-miR-6879-5p 1 0 0
chr3:48674063|48674218 hsa-miR-4728-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6862-5p 0 1 0
chr3:48674063|48674218 hsa-miR-1909-3p 1 0 0
chr3:48674063|48674218 hsa-miR-328-5p 1 0 0
chr3:48674063|48674218 hsa-miR-6511a-5p 1 1 0
chr3:48674063|48674218 hsa-miR-6773-5p 1 0 0
chr3:48674063|48674218 hsa-miR-3679-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6785-5p 0 1 0
chr3:48674063|48674218 hsa-miR-6784-3p 0 1 0
chr3:48674063|48674218 hsa-miR-6862-3p 0 1 0
chr3:48674063|48674218 hsa-miR-6764-5p 0 1 0
chr3:48674063|48674218 hsa-miR-4670-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:48674063|48674218
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MVCILGLSKPCPWGEGRHLPPALFFALALQ
Nucleotide Sequence CTGGTCTGTATCCTGGGCCTCAGCAAGCCATGCCCCTGGGGTGAGGGGAGGCATCTCCCACCAGCTCTATTCTTTGCCTTAGCTTTGCAGTGA
CircID chr3:48674063|48674218
ORF Type ORF2
Protein Length 40
Nucleotide Length 120
Protein Sequence MSSTHCKAKAKNRAGGRCLPSPQGHGLLRPRIQTRRGGDG
Nucleotide Sequence ATGAGCAGCACTCACTGCAAAGCTAAGGCAAAGAATAGAGCTGGTGGGAGATGCCTCCCCTCACCCCAGGGGCATGGCTTGCTGAGGCCCAGGATACAGACCAGGAGGGGTGGGGATGGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab