CircRNA Information

General Information
circRNA Basic Information
CircID chr3:48693715|48694013
Strand -
CircType exon
Host Gene ENSG00000068745.13;
Algorism CIRI2;
Sequence CCTAGCAAAGGCTTCCCACAGTGCCCCCACACGGGTAGGCACCCAGGCCTTTTGTTCTTATAAAATATGTTTTTATTGGTCTTTGCAGTCTCACGTCACAAAATAACAAAATGAACACAAGGCAGATAGAGCTGGTTGGGGAGCACAGACATGTGGTGGCCTTGAAAGCAGCTTTTCCCCTTAAGTCTCTAGAACCTGCCATGAGTAATTAAGACAGTCTTTGAGGATGGGGCTGTCAGGTGGGGGCGTTTCAGCAGGTGCCGACGAGCGCCTTACAAACGACTGGCTGAACACCTTTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:48693715|48694013 hsa-miR-99a-5p 0 0 1
chr3:48693715|48694013 hsa-miR-99a-3p 0 0 1
chr3:48693715|48694013 hsa-miR-100-5p 0 0 1
chr3:48693715|48694013 hsa-miR-100-3p 0 0 1
chr3:48693715|48694013 hsa-miR-320a-5p 0 0 1
chr3:48693715|48694013 hsa-miR-320a-3p 0 0 1
chr3:48693715|48694013 hsa-miR-99b-5p 0 0 1
chr3:48693715|48694013 hsa-miR-99b-3p 0 0 1
chr3:48693715|48694013 hsa-miR-370-5p 0 0 1
chr3:48693715|48694013 hsa-miR-370-3p 0 0 1
chr3:48693715|48694013 hsa-miR-498-5p 0 0 1
chr3:48693715|48694013 hsa-miR-498-3p 0 0 1
chr3:48693715|48694013 hsa-miR-527 0 0 1
chr3:48693715|48694013 hsa-miR-575 0 0 1
chr3:48693715|48694013 hsa-miR-579-5p 0 0 1
chr3:48693715|48694013 hsa-miR-579-3p 0 0 1
chr3:48693715|48694013 hsa-miR-581 0 0 1
chr3:48693715|48694013 hsa-miR-661 1 0 1
chr3:48693715|48694013 hsa-miR-657 0 0 1
chr3:48693715|48694013 hsa-miR-758-5p 0 0 1
chr3:48693715|48694013 hsa-miR-758-3p 0 0 1
chr3:48693715|48694013 hsa-miR-1206 0 0 1
chr3:48693715|48694013 hsa-miR-1282 0 0 1
chr3:48693715|48694013 hsa-miR-671-5p 0 0 1
chr3:48693715|48694013 hsa-miR-491-5p 0 0 1
chr3:48693715|48694013 hsa-miR-1224-3p 0 0 1
chr3:48693715|48694013 hsa-miR-654-3p 0 0 1
chr3:48693715|48694013 hsa-miR-1207-5p 1 0 1
chr3:48693715|48694013 hsa-miR-518d-5p 0 0 1
chr3:48693715|48694013 hsa-miR-519b-5p 0 0 1
chr3:48693715|48694013 hsa-miR-519c-5p 0 0 1
chr3:48693715|48694013 hsa-miR-520c-5p 0 0 1
chr3:48693715|48694013 hsa-miR-320b 0 0 1
chr3:48693715|48694013 hsa-miR-320c 0 0 1
chr3:48693715|48694013 hsa-miR-320d 0 0 1
chr3:48693715|48694013 hsa-miR-518a-5p 0 0 1
chr3:48693715|48694013 hsa-miR-524-3p 0 0 1
chr3:48693715|48694013 hsa-miR-525-3p 0 0 1
chr3:48693715|48694013 hsa-miR-548b-3p 0 0 1
chr3:48693715|48694013 hsa-miR-548d-3p 0 0 1
chr3:48693715|48694013 hsa-miR-526a 0 0 1
chr3:48693715|48694013 hsa-miR-4440 1 0 0
chr3:48693715|48694013 hsa-miR-4648 1 0 0
chr3:48693715|48694013 hsa-miR-8052 1 0 0
chr3:48693715|48694013 hsa-miR-6089 1 0 0
chr3:48693715|48694013 hsa-miR-6741-5p 1 0 0
chr3:48693715|48694013 hsa-miR-3189-5p 1 0 0
chr3:48693715|48694013 hsa-miR-6776-5p 1 0 0
chr3:48693715|48694013 hsa-miR-6749-5p 1 0 0
chr3:48693715|48694013 hsa-miR-6812-5p 1 0 0
chr3:48693715|48694013 hsa-miR-6803-5p 1 0 0
chr3:48693715|48694013 hsa-miR-365b-5p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


    by mir_boxplot.py


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    by mir_boxplot.py


circRNA Open Reading Frame (ORF)
CircID chr3:48693715|48694013
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MRMGLSGGGVSAGADERLTNDWLNTF
Nucleotide Sequence TTGAGGATGGGGCTGTCAGGTGGGGGCGTTTCAGCAGGTGCCGACGAGCGCCTTACAAACGACTGGCTGAACACCTTT

CircID chr3:48693715|48694013
ORF Type ORF2
Protein Length 33
Nucleotide Length 102
Protein Sequence MNTRQIELVGEHRHVVALKAAFPLKSLEPAMSN
Nucleotide Sequence ATGAACACAAGGCAGATAGAGCTGGTTGGGGAGCACAGACATGTGGTGGCCTTGAAAGCAGCTTTTCCCCTTAAGTCTCTAGAACCTGCCATGAGTAATTAA

CircID chr3:48693715|48694013
ORF Type ORF3
Protein Length 66
Nucleotide Length 201
Protein Sequence MAGSRDLRGKAAFKATTCLCSPTSSICLVFILLFCDVRLQRPIKTYFIRTKGLGAYPCGGTVGSLC
Nucleotide Sequence ATGGCAGGTTCTAGAGACTTAAGGGGAAAAGCTGCTTTCAAGGCCACCACATGTCTGTGCTCCCCAACCAGCTCTATCTGCCTTGTGTTCATTTTGTTATTTTGTGACGTGAGACTGCAAAGACCAATAAAAACATATTTTATAAGAACAAAAGGCCTGGGTGCCTACCCGTGTGGGGGCACTGTGGGAAGCCTTTGCTAG

CircID chr3:48693715|48694013
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MLSRPPHVCAPQPALSALCSFCYFVT
Nucleotide Sequence CTGCTTTCAAGGCCACCACATGTCTGTGCTCCCCAACCAGCTCTATCTGCCTTGTGTTCATTTTGTTATTTTGTGACGTGA

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites