CircRNA Information

General Information
circRNA Basic Information
CircID chr3:48982905|48983246
Strand -
CircType exon
Host Gene ENSG00000177479.18;
Algorism CIRI2;
Sequence CAGCAGGCTCAGCTGGAGGCTGAGATCGAAAACCTCTCATGGAAAGTGGAGCGTGCAGACAGCTATGACAGAGGGGTAAGTGCCTACTGTCCTCTTGGATTCTATATTGCAGGTAGAGGACTGGCATGGTAATAGGTGACAGCGTTGTTGGCTTGTGCACTGGTAGCTGCTGCTAAGAATGGGAAGGGCAGTGTTTTTGACTCCTTGGAGGTCCTGGAGGGTGTTTGTGGCTTTGGCTACTCCTTGCTCCCAGGCCTGGGCCATGCAAGCACACACCTTGTTTCTCTGATGCAGGACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCTG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:48982905|48983246 hsa-miR-15a-5p 0 0 1
chr3:48982905|48983246 hsa-miR-15a-3p 0 0 1
chr3:48982905|48983246 hsa-miR-148a-5p 0 0 1
chr3:48982905|48983246 hsa-miR-148a-3p 0 0 1
chr3:48982905|48983246 hsa-miR-15b-5p 0 0 1
chr3:48982905|48983246 hsa-miR-15b-3p 0 0 1
chr3:48982905|48983246 hsa-miR-141-5p 0 0 1
chr3:48982905|48983246 hsa-miR-141-3p 0 0 1
chr3:48982905|48983246 hsa-miR-152-5p 0 0 1
chr3:48982905|48983246 hsa-miR-152-3p 0 0 1
chr3:48982905|48983246 hsa-miR-195-5p 0 0 1
chr3:48982905|48983246 hsa-miR-195-3p 0 0 1
chr3:48982905|48983246 hsa-miR-200a-5p 0 0 1
chr3:48982905|48983246 hsa-miR-200a-3p 0 0 1
chr3:48982905|48983246 hsa-miR-370-5p 0 0 1
chr3:48982905|48983246 hsa-miR-370-3p 0 0 1
chr3:48982905|48983246 hsa-miR-148b-5p 0 0 1
chr3:48982905|48983246 hsa-miR-148b-3p 0 0 1
chr3:48982905|48983246 hsa-miR-346 0 0 1
chr3:48982905|48983246 hsa-miR-424-5p 0 0 1
chr3:48982905|48983246 hsa-miR-424-3p 0 0 1
chr3:48982905|48983246 hsa-miR-497-5p 0 0 1
chr3:48982905|48983246 hsa-miR-497-3p 0 0 1
chr3:48982905|48983246 hsa-miR-503-5p 0 0 1
chr3:48982905|48983246 hsa-miR-503-3p 0 0 1
chr3:48982905|48983246 hsa-miR-586 0 0 1
chr3:48982905|48983246 hsa-miR-587 0 0 1
chr3:48982905|48983246 hsa-miR-596 0 0 1
chr3:48982905|48983246 hsa-miR-624-5p 0 0 1
chr3:48982905|48983246 hsa-miR-624-3p 0 0 1
chr3:48982905|48983246 hsa-miR-626 0 0 1
chr3:48982905|48983246 hsa-miR-632 0 0 1
chr3:48982905|48983246 hsa-miR-636 0 0 1
chr3:48982905|48983246 hsa-miR-646 0 0 1
chr3:48982905|48983246 hsa-miR-661 0 0 1
chr3:48982905|48983246 hsa-miR-766-5p 0 0 1
chr3:48982905|48983246 hsa-miR-766-3p 0 0 1
chr3:48982905|48983246 hsa-miR-665 0 0 1
chr3:48982905|48983246 hsa-miR-920 0 0 1
chr3:48982905|48983246 hsa-miR-938 0 0 1
chr3:48982905|48983246 hsa-miR-1825 0 0 1
chr3:48982905|48983246 hsa-miR-515-5p 0 0 1
chr3:48982905|48983246 hsa-miR-556-3p 0 0 1
chr3:48982905|48983246 hsa-miR-16 0 0 1
chr3:48982905|48983246 hsa-miR-218 0 0 1
chr3:48982905|48983246 hsa-miR-611 1 0 0
chr3:48982905|48983246 hsa-miR-762 1 0 0
chr3:48982905|48983246 hsa-miR-1913 1 0 0
chr3:48982905|48983246 hsa-miR-378c 1 0 0
chr3:48982905|48983246 hsa-miR-3909 1 0 0
chr3:48982905|48983246 hsa-miR-4512 1 0 0
chr3:48982905|48983246 hsa-miR-4741 1 0 0
chr3:48982905|48983246 hsa-miR-5787 1 0 0
chr3:48982905|48983246 hsa-miR-6081 1 0 0
chr3:48982905|48983246 hsa-miR-6090 1 0 0
chr3:48982905|48983246 hsa-miR-150-3p 1 0 0
chr3:48982905|48983246 hsa-miR-4747-3p 1 0 0
chr3:48982905|48983246 hsa-miR-939-3p 1 0 0
chr3:48982905|48983246 hsa-miR-4640-5p 1 0 0
chr3:48982905|48983246 hsa-miR-296-3p 1 0 0
chr3:48982905|48983246 hsa-miR-6749-5p 1 0 0
chr3:48982905|48983246 hsa-miR-6769a-3p 1 0 0
chr3:48982905|48983246 hsa-miR-4776-3p 1 0 0
chr3:48982905|48983246 hsa-miR-3120-5p 1 0 0
chr3:48982905|48983246 hsa-miR-1910-5p 1 0 0
chr3:48982905|48983246 hsa-miR-541-5p 1 0 0
chr3:48982905|48983246 hsa-miR-7107-5p 1 0 0
chr3:48982905|48983246 hsa-miR-6779-5p 1 0 0
chr3:48982905|48983246 hsa-miR-4685-5p 1 0 0
chr3:48982905|48983246 hsa-miR-324-3p 1 0 0
chr3:48982905|48983246 hsa-miR-4722-3p 1 0 0
chr3:48982905|48983246 hsa-miR-6837-5p 1 0 0
chr3:48982905|48983246 hsa-miR-6859-5p 1 0 0
chr3:48982905|48983246 hsa-miR-4691-5p 1 0 0
chr3:48982905|48983246 hsa-miR-6876-3p 1 0 0
chr3:48982905|48983246 hsa-miR-6872-5p 1 0 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:48982905|48983246
ORF Type ORF1
Protein Length 39
Nucleotide Length 120
Protein Sequence MEAEIENLSWKVERADSYDRGVSAYCPLGFYIAGRGLAW
Nucleotide Sequence CTGGAGGCTGAGATCGAAAACCTCTCATGGAAAGTGGAGCGTGCAGACAGCTATGACAGAGGGGTAAGTGCCTACTGTCCTCTTGGATTCTATATTGCAGGTAGAGGACTGGCATGGTAA
CircID chr3:48982905|48983246
ORF Type ORF2
Protein Length 66
Nucleotide Length 198
Protein Sequence MLACALVAAAKNGKGSVFDSLEVLEGVCGFGYSLLPGLGHASTHLVSLMQDLENQMHIAEQRRRTL
Nucleotide Sequence TTGTTGGCTTGTGCACTGGTAGCTGCTGCTAAGAATGGGAAGGGCAGTGTTTTTGACTCCTTGGAGGTCCTGGAGGGTGTTTGTGGCTTTGGCTACTCCTTGCTCCCAGGCCTGGGCCATGCAAGCACACACCTTGTTTCTCTGATGCAGGACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCTG
CircID chr3:48982905|48983246
ORF Type ORF3
Protein Length 40
Nucleotide Length 123
Protein Sequence MLLRMGRAVFLTPWRSWRVFVALATPCSQAWAMQAHTLFL
Nucleotide Sequence CTGCTGCTAAGAATGGGAAGGGCAGTGTTTTTGACTCCTTGGAGGTCCTGGAGGGTGTTTGTGGCTTTGGCTACTCCTTGCTCCCAGGCCTGGGCCATGCAAGCACACACCTTGTTTCTCTGA
CircID chr3:48982905|48983246
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MWLWLLLAPRPGPCKHTPCFSDAGLGEPDAYSGAAEENP
Nucleotide Sequence TTGTGGCTTTGGCTACTCCTTGCTCCCAGGCCTGGGCCATGCAAGCACACACCTTGTTTCTCTGATGCAGGACTTGGAGAACCAGATGCATATAGCGGAGCAGCGGAGGAGAACCCT
CircID chr3:48982905|48983246
ORF Type ORF5
Protein Length 96
Nucleotide Length 291
Protein Sequence MLRYMHLVLQVLHQRNKVCACMAQAWEQGVAKATNTLQDLQGVKNTALPILSSSYQCTSQQRCHLLPCQSSTCNIESKRTVGTYPSVIAVCTLHFP
Nucleotide Sequence CTGCTCCGCTATATGCATCTGGTTCTCCAAGTCCTGCATCAGAGAAACAAGGTGTGTGCTTGCATGGCCCAGGCCTGGGAGCAAGGAGTAGCCAAAGCCACAAACACCCTCCAGGACCTCCAAGGAGTCAAAAACACTGCCCTTCCCATTCTTAGCAGCAGCTACCAGTGCACAAGCCAACAACGCTGTCACCTATTACCATGCCAGTCCTCTACCTGCAATATAGAATCCAAGAGGACAGTAGGCACTTACCCCTCTGTCATAGCTGTCTGCACGCTCCACTTTCCATGA
CircID chr3:48982905|48983246
ORF Type ORF6
Protein Length 29
Nucleotide Length 90
Protein Sequence MPFPFLAAATSAQANNAVTYYHASPLPAI
Nucleotide Sequence CTGCCCTTCCCATTCTTAGCAGCAGCTACCAGTGCACAAGCCAACAACGCTGTCACCTATTACCATGCCAGTCCTCTACCTGCAATATAG
CircID chr3:48982905|48983246
ORF Type ORF7
Protein Length 31
Nucleotide Length 96
Protein Sequence MHGPGLGARSSQSHKHPPGPPRSQKHCPSHS
Nucleotide Sequence TTGCATGGCCCAGGCCTGGGAGCAAGGAGTAGCCAAAGCCACAAACACCCTCCAGGACCTCCAAGGAGTCAAAAACACTGCCCTTCCCATTCTTAG
CircID chr3:48982905|48983246
ORF Type ORF8
Protein Length 47
Nucleotide Length 141
Protein Sequence MSPITMPVLYLQYRIQEDSRHLPLCHSCLHAPLSMRGFRSQPPAEPA
Nucleotide Sequence CTGTCACCTATTACCATGCCAGTCCTCTACCTGCAATATAGAATCCAAGAGGACAGTAGGCACTTACCCCTCTGTCATAGCTGTCTGCACGCTCCACTTTCCATGAGAGGTTTTCGATCTCAGCCTCCAGCTGAGCCTGCT
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab