CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49012584|49012946
Strand -
CircType exon
Host Gene ENSG00000178252.16;
Algorism CIRI2;
Sequence ACTCAAGGCTGTGACTCTGGCTGGCTCTTGGCGACTGCTGGCAGTGACTGATACAGGGGCCCTGTATCTCTATGACGTCGAGGTCAAGTGCTGGGAGCAGCTGCTAGAGGATAAACATTTCCAGTCCTACTGCCTGCTGGAGGCAGCTCCTGGTCCCGAGGGCTTCGGATTGTGTGCTATGGCCAATGGGGAAGGTCGTGTCAAGGTTGTCCCCATCAACACTCCAACTGCTGCTGTGGACCAGACCCTGTTTCCTGGGAAGGTGCACAGCTTGAGCTGGGCCCTGCGTGGTTATGAGGAGCTCCTGTTGCTGGCATCGGGCCCTGGCGGGGTAGTAGCTTGCCTAGAGATCTCAGCCGCACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49012584|49012946 hsa-miR-15a-5p 0 0 1
chr3:49012584|49012946 hsa-miR-15a-3p 0 0 1
chr3:49012584|49012946 hsa-miR-22-5p 0 0 1
chr3:49012584|49012946 hsa-miR-22-3p 0 0 1
chr3:49012584|49012946 hsa-miR-192-5p 0 0 1
chr3:49012584|49012946 hsa-miR-192-3p 0 0 1
chr3:49012584|49012946 hsa-miR-214-5p 0 0 1
chr3:49012584|49012946 hsa-miR-214-3p 0 0 1
chr3:49012584|49012946 hsa-miR-215-5p 0 0 1
chr3:49012584|49012946 hsa-miR-215-3p 0 0 1
chr3:49012584|49012946 hsa-miR-15b-5p 0 0 1
chr3:49012584|49012946 hsa-miR-15b-3p 0 0 1
chr3:49012584|49012946 hsa-miR-122-5p 0 0 1
chr3:49012584|49012946 hsa-miR-122-3p 0 0 1
chr3:49012584|49012946 hsa-miR-195-5p 0 0 1
chr3:49012584|49012946 hsa-miR-195-3p 0 0 1
chr3:49012584|49012946 hsa-miR-335-5p 0 0 1
chr3:49012584|49012946 hsa-miR-335-3p 0 0 1
chr3:49012584|49012946 hsa-miR-424-5p 0 0 1
chr3:49012584|49012946 hsa-miR-424-3p 0 0 1
chr3:49012584|49012946 hsa-miR-376b-5p 0 0 1
chr3:49012584|49012946 hsa-miR-376b-3p 0 0 1
chr3:49012584|49012946 hsa-miR-497-5p 0 0 1
chr3:49012584|49012946 hsa-miR-497-3p 0 0 1
chr3:49012584|49012946 hsa-miR-503-5p 0 0 1
chr3:49012584|49012946 hsa-miR-503-3p 0 0 1
chr3:49012584|49012946 hsa-miR-558 0 0 1
chr3:49012584|49012946 hsa-miR-588 0 0 1
chr3:49012584|49012946 hsa-miR-598-5p 0 0 1
chr3:49012584|49012946 hsa-miR-598-3p 0 0 1
chr3:49012584|49012946 hsa-miR-645 0 0 1
chr3:49012584|49012946 hsa-miR-646 0 1 1
chr3:49012584|49012946 hsa-miR-766-5p 0 0 1
chr3:49012584|49012946 hsa-miR-766-3p 0 0 1
chr3:49012584|49012946 hsa-miR-675-5p 0 0 1
chr3:49012584|49012946 hsa-miR-675-3p 0 0 1
chr3:49012584|49012946 hsa-miR-708-5p 0 0 1
chr3:49012584|49012946 hsa-miR-708-3p 0 0 1
chr3:49012584|49012946 hsa-miR-665 0 0 1
chr3:49012584|49012946 hsa-miR-1182 0 0 1
chr3:49012584|49012946 hsa-miR-1202 0 1 1
chr3:49012584|49012946 hsa-miR-1251-5p 0 0 1
chr3:49012584|49012946 hsa-miR-1251-3p 0 0 1
chr3:49012584|49012946 hsa-miR-296-5p 0 0 1
chr3:49012584|49012946 hsa-miR-28-5p 0 0 1
chr3:49012584|49012946 hsa-miR-875-3p 0 0 1
chr3:49012584|49012946 hsa-miR-338-3p 0 0 1
chr3:49012584|49012946 hsa-miR-16 0 0 1
chr3:49012584|49012946 hsa-miR-514 0 0 1
chr3:49012584|49012946 hsa-miR-376a 0 0 1
chr3:49012584|49012946 hsa-miR-608 1 0 0
chr3:49012584|49012946 hsa-miR-638 1 0 0
chr3:49012584|49012946 hsa-miR-762 1 0 0
chr3:49012584|49012946 hsa-miR-761 0 1 0
chr3:49012584|49012946 hsa-miR-940 1 0 0
chr3:49012584|49012946 hsa-miR-3139 0 1 0
chr3:49012584|49012946 hsa-miR-4258 0 1 0
chr3:49012584|49012946 hsa-miR-4261 0 1 0
chr3:49012584|49012946 hsa-miR-3918 0 1 0
chr3:49012584|49012946 hsa-miR-4514 0 1 0
chr3:49012584|49012946 hsa-miR-4515 1 0 0
chr3:49012584|49012946 hsa-miR-4530 0 1 0
chr3:49012584|49012946 hsa-miR-3972 0 1 0
chr3:49012584|49012946 hsa-miR-3976 0 1 0
chr3:49012584|49012946 hsa-miR-4648 0 1 0
chr3:49012584|49012946 hsa-miR-4656 1 0 0
chr3:49012584|49012946 hsa-miR-4673 1 0 0
chr3:49012584|49012946 hsa-miR-4692 0 1 0
chr3:49012584|49012946 hsa-miR-4706 1 0 0
chr3:49012584|49012946 hsa-miR-6069 1 0 0
chr3:49012584|49012946 hsa-miR-7974 1 0 0
chr3:49012584|49012946 hsa-miR-9903 0 1 0
chr3:49012584|49012946 hsa-miR-125b-2-3p 1 0 0
chr3:49012584|49012946 hsa-miR-4700-3p 1 0 0
chr3:49012584|49012946 hsa-miR-671-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6089 1 0 0
chr3:49012584|49012946 hsa-miR-4695-5p 1 0 0
chr3:49012584|49012946 hsa-miR-769-5p 1 0 0
chr3:49012584|49012946 hsa-miR-4722-5p 1 0 0
chr3:49012584|49012946 hsa-miR-1301-3p 1 0 0
chr3:49012584|49012946 hsa-miR-593-5p 1 0 0
chr3:49012584|49012946 hsa-miR-7160-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6820-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6762-3p 1 1 0
chr3:49012584|49012946 hsa-miR-6727-5p 1 0 0
chr3:49012584|49012946 hsa-let-7i-3p 1 0 0
chr3:49012584|49012946 hsa-miR-3194-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6810-5p 0 1 0
chr3:49012584|49012946 hsa-miR-5008-5p 1 1 0
chr3:49012584|49012946 hsa-miR-6858-3p 0 1 0
chr3:49012584|49012946 hsa-miR-3944-3p 1 0 0
chr3:49012584|49012946 hsa-miR-4640-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6753-5p 1 0 0
chr3:49012584|49012946 hsa-miR-7161-3p 1 0 0
chr3:49012584|49012946 hsa-miR-4690-5p 1 1 0
chr3:49012584|49012946 hsa-miR-194-3p 1 0 0
chr3:49012584|49012946 hsa-miR-4740-5p 1 0 0
chr3:49012584|49012946 hsa-miR-7112-5p 1 0 0
chr3:49012584|49012946 hsa-miR-7160-3p 0 1 0
chr3:49012584|49012946 hsa-miR-585-5p 0 1 0
chr3:49012584|49012946 hsa-miR-7152-3p 0 1 0
chr3:49012584|49012946 hsa-miR-670-3p 0 1 0
chr3:49012584|49012946 hsa-miR-1296-5p 0 1 0
chr3:49012584|49012946 hsa-miR-3675-3p 0 1 0
chr3:49012584|49012946 hsa-miR-3670 0 1 0
chr3:49012584|49012946 hsa-miR-1244 0 1 0
chr3:49012584|49012946 hsa-miR-6790-3p 0 1 0
chr3:49012584|49012946 hsa-miR-425-5p 1 1 0
chr3:49012584|49012946 hsa-miR-6812-5p 1 1 0
chr3:49012584|49012946 hsa-miR-5001-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6836-5p 0 1 0
chr3:49012584|49012946 hsa-miR-10396b-5p 1 0 0
chr3:49012584|49012946 hsa-miR-449c-5p 1 1 0
chr3:49012584|49012946 hsa-miR-4685-5p 0 1 0
chr3:49012584|49012946 hsa-miR-4726-5p 1 0 0
chr3:49012584|49012946 hsa-miR-4749-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6794-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6511b-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6724-5p 1 0 0
chr3:49012584|49012946 hsa-miR-6762-5p 1 1 0
chr3:49012584|49012946 hsa-miR-4757-5p 0 1 0
chr3:49012584|49012946 hsa-miR-5581-5p 0 1 0
chr3:49012584|49012946 hsa-miR-3619-5p 1 1 0
chr3:49012584|49012946 hsa-miR-10397-5p 0 1 0
chr3:49012584|49012946 hsa-miR-2682-5p 0 1 0
chr3:49012584|49012946 hsa-miR-6838-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49012584|49012946
ORF Type ORF1
Protein Length 55
Nucleotide Length 168
Protein Sequence MPAGGSSWSRGLRIVCYGQWGRSCQGCPHQHSNCCCGPDPVSWEGAQLELGPAWL
Nucleotide Sequence CTGCCTGCTGGAGGCAGCTCCTGGTCCCGAGGGCTTCGGATTGTGTGCTATGGCCAATGGGGAAGGTCGTGTCAAGGTTGTCCCCATCAACACTCCAACTGCTGCTGTGGACCAGACCCTGTTTCCTGGGAAGGTGCACAGCTTGAGCTGGGCCCTGCGTGGTTATGA
CircID chr3:49012584|49012946
ORF Type ORF2
Protein Length 115
Nucleotide Length 345
Protein Sequence MAGSWRLLAVTDTGALYLYDVEVKCWEQLLEDKHFQSYCLLEAAPGPEGFGLCAMANGEGRVKVVPINTPTAAVDQTLFPGKVHSLSWALRGYEELLLLASGPGGVVACLEISAA
Nucleotide Sequence CTGGCTGGCTCTTGGCGACTGCTGGCAGTGACTGATACAGGGGCCCTGTATCTCTATGACGTCGAGGTCAAGTGCTGGGAGCAGCTGCTAGAGGATAAACATTTCCAGTCCTACTGCCTGCTGGAGGCAGCTCCTGGTCCCGAGGGCTTCGGATTGTGTGCTATGGCCAATGGGGAAGGTCGTGTCAAGGTTGTCCCCATCAACACTCCAACTGCTGCTGTGGACCAGACCCTGTTTCCTGGGAAGGTGCACAGCTTGAGCTGGGCCCTGCGTGGTTATGAGGAGCTCCTGTTGCTGGCATCGGGCCCTGGCGGGGTAGTAGCTTGCCTAGAGATCTCAGCCGCA
CircID chr3:49012584|49012946
ORF Type ORF3
Protein Length 41
Nucleotide Length 126
Protein Sequence MVPRASDCVLWPMGKVVSRLSPSTLQLLLWTRPCFLGRCTA
Nucleotide Sequence CTGGTCCCGAGGGCTTCGGATTGTGTGCTATGGCCAATGGGGAAGGTCGTGTCAAGGTTGTCCCCATCAACACTCCAACTGCTGCTGTGGACCAGACCCTGTTTCCTGGGAAGGTGCACAGCTTGA
CircID chr3:49012584|49012946
ORF Type ORF4
Protein Length 47
Nucleotide Length 144
Protein Sequence MCTFPGNRVWSTAAVGVLMGTTLTRPSPLAIAHNPKPSGPGAASSRQ
Nucleotide Sequence CTGTGCACCTTCCCAGGAAACAGGGTCTGGTCCACAGCAGCAGTTGGAGTGTTGATGGGGACAACCTTGACACGACCTTCCCCATTGGCCATAGCACACAATCCGAAGCCCTCGGGACCAGGAGCTGCCTCCAGCAGGCAGTAG
CircID chr3:49012584|49012946
ORF Type ORF5
Protein Length 46
Nucleotide Length 141
Protein Sequence MRSLGKLLPRQGPMPATGAPHNHAGPSSSCAPSQETGSGPQQQLEC
Nucleotide Sequence CTGAGATCTCTAGGCAAGCTACTACCCCGCCAGGGCCCGATGCCAGCAACAGGAGCTCCTCATAACCACGCAGGGCCCAGCTCAAGCTGTGCACCTTCCCAGGAAACAGGGTCTGGTCCACAGCAGCAGTTGGAGTGTTGA
CircID chr3:49012584|49012946
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MVHSSSWSVDGDNLDTTFPIGHSTQSEALGTRSCLQQAVGLEMFIL
Nucleotide Sequence CTGGTCCACAGCAGCAGTTGGAGTGTTGATGGGGACAACCTTGACACGACCTTCCCCATTGGCCATAGCACACAATCCGAAGCCCTCGGGACCAGGAGCTGCCTCCAGCAGGCAGTAGGACTGGAAATGTTTATCCTCTAG
CircID chr3:49012584|49012946
ORF Type ORF7
Protein Length 33
Nucleotide Length 99
Protein Sequence MLPALDLDVIEIQGPCISHCQQSPRASQSHSLE
Nucleotide Sequence CTGCTCCCAGCACTTGACCTCGACGTCATAGAGATACAGGGCCCCTGTATCAGTCACTGCCAGCAGTCGCCAAGAGCCAGCCAGAGTCACAGCCTTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab