CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49024922|49025212
Strand +
CircType exon
Host Gene ENSG00000178035.10;
Algorism CIRI2;
Sequence GGCGCTTTGGTGTTCCGGTCATTGCTGATGGAGGAATCCAAAATGTGGGTCATATTGCGAAAGCCTTGGCCCTTGGGGCCTCCACAGGTGAGGCCCAGTACCCGTGAAGGCCAGTGGGACCCCCTCCCTAGTGCTGCTTAGGCTCTAACCCAAGCACTCCATCTGTCCGCAGTCATGATGGGCTCTCTCCTGGCTGCCACCACTGAGGCCCCTGGTGAATACTTCTTTTCCGATGGGATCCGGCTAAAGAAATATCGCGGTATGGGTTCTCTCGATGCCATGGACAAGCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49024922|49025212 hsa-miR-15a-5p 0 0 1
chr3:49024922|49025212 hsa-miR-15a-3p 0 0 1
chr3:49024922|49025212 hsa-miR-197-5p 0 0 1
chr3:49024922|49025212 hsa-miR-197-3p 0 0 1
chr3:49024922|49025212 hsa-miR-15b-5p 0 0 1
chr3:49024922|49025212 hsa-miR-15b-3p 0 0 1
chr3:49024922|49025212 hsa-miR-122-5p 0 0 1
chr3:49024922|49025212 hsa-miR-122-3p 0 0 1
chr3:49024922|49025212 hsa-miR-185-5p 0 0 1
chr3:49024922|49025212 hsa-miR-185-3p 0 0 1
chr3:49024922|49025212 hsa-miR-195-5p 0 0 1
chr3:49024922|49025212 hsa-miR-195-3p 0 0 1
chr3:49024922|49025212 hsa-miR-424-5p 0 0 1
chr3:49024922|49025212 hsa-miR-424-3p 0 0 1
chr3:49024922|49025212 hsa-miR-193b-5p 0 0 1
chr3:49024922|49025212 hsa-miR-193b-3p 0 0 1
chr3:49024922|49025212 hsa-miR-497-5p 0 0 1
chr3:49024922|49025212 hsa-miR-497-3p 0 0 1
chr3:49024922|49025212 hsa-miR-520f-5p 0 0 1
chr3:49024922|49025212 hsa-miR-520f-3p 0 0 1
chr3:49024922|49025212 hsa-miR-518f-5p 0 0 1
chr3:49024922|49025212 hsa-miR-518f-3p 0 0 1
chr3:49024922|49025212 hsa-miR-518b 0 0 1
chr3:49024922|49025212 hsa-miR-518c-5p 0 0 1
chr3:49024922|49025212 hsa-miR-518c-3p 0 0 1
chr3:49024922|49025212 hsa-miR-545-5p 0 0 1
chr3:49024922|49025212 hsa-miR-545-3p 0 0 1
chr3:49024922|49025212 hsa-miR-589-5p 0 0 1
chr3:49024922|49025212 hsa-miR-589-3p 0 0 1
chr3:49024922|49025212 hsa-miR-636 0 1 1
chr3:49024922|49025212 hsa-miR-650 0 0 1
chr3:49024922|49025212 hsa-miR-665 0 1 1
chr3:49024922|49025212 hsa-miR-1226-5p 0 0 1
chr3:49024922|49025212 hsa-miR-1226-3p 0 0 1
chr3:49024922|49025212 hsa-miR-1321 0 0 1
chr3:49024922|49025212 hsa-miR-127-3p 0 1 1
chr3:49024922|49025212 hsa-miR-615-5p 1 0 1
chr3:49024922|49025212 hsa-miR-885-3p 0 0 1
chr3:49024922|49025212 hsa-miR-518a-3p 0 0 1
chr3:49024922|49025212 hsa-miR-193a-3p 0 0 1
chr3:49024922|49025212 hsa-miR-518d-3p 0 0 1
chr3:49024922|49025212 hsa-miR-16 0 0 1
chr3:49024922|49025212 hsa-miR-551a 0 1 0
chr3:49024922|49025212 hsa-miR-3138 1 0 0
chr3:49024922|49025212 hsa-miR-4739 1 1 0
chr3:49024922|49025212 hsa-miR-4751 1 1 0
chr3:49024922|49025212 hsa-miR-8089 1 0 0
chr3:49024922|49025212 hsa-miR-504-3p 1 0 0
chr3:49024922|49025212 hsa-miR-7114-5p 1 1 0
chr3:49024922|49025212 hsa-miR-874-5p 0 1 0
chr3:49024922|49025212 hsa-miR-6741-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6732-5p 0 1 0
chr3:49024922|49025212 hsa-miR-6782-5p 1 0 0
chr3:49024922|49025212 hsa-miR-5008-5p 0 1 0
chr3:49024922|49025212 hsa-miR-5004-3p 0 1 0
chr3:49024922|49025212 hsa-miR-4743-5p 1 0 0
chr3:49024922|49025212 hsa-miR-149-3p 1 0 0
chr3:49024922|49025212 hsa-miR-4733-3p 0 1 0
chr3:49024922|49025212 hsa-miR-6789-5p 1 0 0
chr3:49024922|49025212 hsa-miR-1225-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6814-5p 0 1 0
chr3:49024922|49025212 hsa-miR-4712-3p 1 0 0
chr3:49024922|49025212 hsa-miR-4763-3p 1 0 0
chr3:49024922|49025212 hsa-miR-6787-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6812-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6865-5p 1 1 0
chr3:49024922|49025212 hsa-miR-6743-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6756-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6819-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6851-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6779-5p 1 0 0
chr3:49024922|49025212 hsa-miR-4685-5p 0 1 0
chr3:49024922|49025212 hsa-miR-6848-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6883-5p 0 1 0
chr3:49024922|49025212 hsa-miR-1914-3p 1 0 0
chr3:49024922|49025212 hsa-miR-6762-5p 1 0 0
chr3:49024922|49025212 hsa-miR-6792-3p 0 1 0
chr3:49024922|49025212 hsa-miR-4756-5p 0 1 0
chr3:49024922|49025212 hsa-miR-4691-5p 0 1 0
chr3:49024922|49025212 hsa-miR-323b-5p 1 0 0
chr3:49024922|49025212 hsa-miR-10523-5p 0 1 0
chr3:49024922|49025212 hsa-miR-3922-3p 0 1 0
chr3:49024922|49025212 hsa-miR-450b-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49024922|49025212
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MVFRSLLMEESKMWVILRKPWPLGPPQVRPSTREGQWDPLPSAA
Nucleotide Sequence TTGGTGTTCCGGTCATTGCTGATGGAGGAATCCAAAATGTGGGTCATATTGCGAAAGCCTTGGCCCTTGGGGCCTCCACAGGTGAGGCCCAGTACCCGTGAAGGCCAGTGGGACCCCCTCCCTAGTGCTGCTTAG
CircID chr3:49024922|49025212
ORF Type ORF2
Protein Length 43
Nucleotide Length 129
Protein Sequence MSAVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKH
Nucleotide Sequence CTGTCCGCAGTCATGATGGGCTCTCTCCTGGCTGCCACCACTGAGGCCCCTGGTGAATACTTCTTTTCCGATGGGATCCGGCTAAAGAAATATCGCGGTATGGGTTCTCTCGATGCCATGGACAAGCAC
CircID chr3:49024922|49025212
ORF Type ORF3
Protein Length 31
Nucleotide Length 96
Protein Sequence MAFTGTGPHLWRPQGPRLSQYDPHFGFLHQQ
Nucleotide Sequence CTGGCCTTCACGGGTACTGGGCCTCACCTGTGGAGGCCCCAAGGGCCAAGGCTTTCGCAATATGACCCACATTTTGGATTCCTCCATCAGCAATGA
CircID chr3:49024922|49025212
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MSMASREPIPRYFFSRIPSEKKYSPGASVVAARREPIMTADRWSAWVRA
Nucleotide Sequence TTGTCCATGGCATCGAGAGAACCCATACCGCGATATTTCTTTAGCCGGATCCCATCGGAAAAGAAGTATTCACCAGGGGCCTCAGTGGTGGCAGCCAGGAGAGAGCCCATCATGACTGCGGACAGATGGAGTGCTTGGGTTAGAGCCTAA
CircID chr3:49024922|49025212
ORF Type ORF5
Protein Length 32
Nucleotide Length 96
Protein Sequence MGLTCGGPKGQGFRNMTHILDSSISNDRNTKA
Nucleotide Sequence CTGGGCCTCACCTGTGGAGGCCCCAAGGGCCAAGGCTTTCGCAATATGACCCACATTTTGGATTCCTCCATCAGCAATGACCGGAACACCAAAGCG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab