CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49028248|49028508
Strand -
CircType exon
Host Gene ENSG00000178035.10;
Algorism CIRI2;
Sequence CTTCACTTTCCGAACTTCATTGGCCTGGAATTCAGGTGTACAGTTGTGGTGGATGAAGCCAATACCGCCTGTAAGCTACAGGATAAAAAGAGACTACTACTAAGTGACAAGAAGCAGGACTGAATGCCTTTGGGGAAAGGCGATGGAGTCCTTGCTCCTTCCCCCACACCCCATGGGGCTCACCGCCATTGCTATGGCCATCCCAGCCTCTGTGACTGTGTCCATGGGAGAGGAAACCAGTGGGGTCTTAAGAGTGATTTT
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49028248|49028508 hsa-miR-21-5p 0 0 1
chr3:49028248|49028508 hsa-miR-21-3p 0 0 1
chr3:49028248|49028508 hsa-miR-208a-5p 0 0 1
chr3:49028248|49028508 hsa-miR-208a-3p 0 0 1
chr3:49028248|49028508 hsa-miR-150-5p 0 0 1
chr3:49028248|49028508 hsa-miR-150-3p 0 0 1
chr3:49028248|49028508 hsa-miR-34b-5p 0 0 1
chr3:49028248|49028508 hsa-miR-34b-3p 0 0 1
chr3:49028248|49028508 hsa-miR-370-5p 0 0 1
chr3:49028248|49028508 hsa-miR-370-3p 0 0 1
chr3:49028248|49028508 hsa-miR-578 0 0 1
chr3:49028248|49028508 hsa-miR-600 0 0 1
chr3:49028248|49028508 hsa-miR-608 1 0 1
chr3:49028248|49028508 hsa-miR-625-5p 0 0 1
chr3:49028248|49028508 hsa-miR-625-3p 0 0 1
chr3:49028248|49028508 hsa-miR-668-5p 0 0 1
chr3:49028248|49028508 hsa-miR-668-3p 0 0 1
chr3:49028248|49028508 hsa-miR-208b-5p 0 0 1
chr3:49028248|49028508 hsa-miR-208b-3p 0 0 1
chr3:49028248|49028508 hsa-miR-1238-5p 0 0 1
chr3:49028248|49028508 hsa-miR-1238-3p 0 0 1
chr3:49028248|49028508 hsa-miR-1275 0 0 1
chr3:49028248|49028508 hsa-miR-486-5p 0 0 1
chr3:49028248|49028508 hsa-miR-1225-3p 0 0 1
chr3:49028248|49028508 hsa-miR-491-5p 0 0 1
chr3:49028248|49028508 hsa-miR-532-3p 0 0 1
chr3:49028248|49028508 hsa-miR-485-5p 0 0 1
chr3:49028248|49028508 hsa-miR-1244 0 0 1
chr3:49028248|49028508 hsa-miR-342-5p 0 0 1
chr3:49028248|49028508 hsa-miR-455-3p 0 0 1
chr3:49028248|49028508 hsa-miR-590-5p 0 0 1
chr3:49028248|49028508 hsa-miR-1233 0 0 1
chr3:49028248|49028508 hsa-miR-499-5p 0 0 1
chr3:49028248|49028508 hsa-miR-638 1 0 0
chr3:49028248|49028508 hsa-miR-762 1 0 0
chr3:49028248|49028508 hsa-miR-3137 0 1 0
chr3:49028248|49028508 hsa-miR-4452 0 1 0
chr3:49028248|49028508 hsa-miR-4462 1 0 0
chr3:49028248|49028508 hsa-miR-4505 0 1 0
chr3:49028248|49028508 hsa-miR-6085 1 0 0
chr3:49028248|49028508 hsa-miR-6086 1 1 0
chr3:49028248|49028508 hsa-miR-12122 0 1 0
chr3:49028248|49028508 hsa-miR-92a-1-5p 1 1 0
chr3:49028248|49028508 hsa-miR-4731-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6747-5p 0 1 0
chr3:49028248|49028508 hsa-miR-205-3p 0 1 0
chr3:49028248|49028508 hsa-miR-6728-5p 1 1 0
chr3:49028248|49028508 hsa-miR-6089 1 0 0
chr3:49028248|49028508 hsa-miR-3192-5p 1 1 0
chr3:49028248|49028508 hsa-miR-6890-5p 0 1 0
chr3:49028248|49028508 hsa-miR-3187-3p 0 1 0
chr3:49028248|49028508 hsa-miR-6796-5p 0 1 0
chr3:49028248|49028508 hsa-miR-6782-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6847-5p 1 0 0
chr3:49028248|49028508 hsa-miR-4787-5p 1 0 0
chr3:49028248|49028508 hsa-miR-7850-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6866-5p 0 1 0
chr3:49028248|49028508 hsa-miR-584-3p 1 0 0
chr3:49028248|49028508 hsa-miR-1910-5p 1 1 0
chr3:49028248|49028508 hsa-miR-670-3p 0 1 0
chr3:49028248|49028508 hsa-miR-598-5p 0 1 0
chr3:49028248|49028508 hsa-miR-541-5p 0 1 0
chr3:49028248|49028508 hsa-miR-6838-3p 1 1 0
chr3:49028248|49028508 hsa-miR-1207-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6812-5p 1 1 0
chr3:49028248|49028508 hsa-miR-5001-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6737-5p 1 1 0
chr3:49028248|49028508 hsa-miR-6743-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6752-5p 0 1 0
chr3:49028248|49028508 hsa-miR-6754-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6803-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6813-5p 1 0 0
chr3:49028248|49028508 hsa-miR-6819-5p 0 1 0
chr3:49028248|49028508 hsa-miR-7110-5p 1 1 0
chr3:49028248|49028508 hsa-miR-10401-5p 0 1 0
chr3:49028248|49028508 hsa-miR-6808-5p 1 0 0
chr3:49028248|49028508 hsa-miR-3620-5p 1 0 0
chr3:49028248|49028508 hsa-miR-5196-5p 0 1 0
chr3:49028248|49028508 hsa-miR-6780b-5p 0 1 0
chr3:49028248|49028508 hsa-miR-4725-3p 0 1 0
chr3:49028248|49028508 hsa-miR-6848-5p 0 1 0
chr3:49028248|49028508 hsa-miR-4665-5p 0 1 0
chr3:49028248|49028508 hsa-miR-7151-3p 0 1 0
chr3:49028248|49028508 hsa-miR-4747-5p 0 1 0
chr3:49028248|49028508 hsa-miR-4716-3p 0 1 0
chr3:49028248|49028508 hsa-miR-6724-5p 1 0 0
chr3:49028248|49028508 hsa-miR-3059-5p 0 1 0
chr3:49028248|49028508 hsa-miR-3622a-3p 0 1 0
chr3:49028248|49028508 hsa-miR-6884-5p 0 1 0
chr3:49028248|49028508 hsa-miR-3622b-3p 0 1 0
chr3:49028248|49028508 hsa-miR-6506-5p 0 1 0
chr3:49028248|49028508 hsa-miR-3140-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:49028248|49028508
ORF Type ORF1
Protein Length 32
Nucleotide Length 99
Protein Sequence MEFRCTVVVDEANTACKLQDKKRLLLSDKKQD
Nucleotide Sequence CTGGAATTCAGGTGTACAGTTGTGGTGGATGAAGCCAATACCGCCTGTAAGCTACAGGATAAAAAGAGACTACTACTAAGTGACAAGAAGCAGGACTGA
CircID chr3:49028248|49028508
ORF Type ORF2
Protein Length 46
Nucleotide Length 138
Protein Sequence MPLGKGDGVLAPSPTPHGAHRHCYGHPSLCDCVHGRGNQWGLKSDF
Nucleotide Sequence ATGCCTTTGGGGAAAGGCGATGGAGTCCTTGCTCCTTCCCCCACACCCCATGGGGCTCACCGCCATTGCTATGGCCATCCCAGCCTCTGTGACTGTGTCCATGGGAGAGGAAACCAGTGGGGTCTTAAGAGTGATTTT
CircID chr3:49028248|49028508
ORF Type ORF3
Protein Length 27
Nucleotide Length 84
Protein Sequence MAWNSGVQLWWMKPIPPVSYRIKRDYY
Nucleotide Sequence TTGGCCTGGAATTCAGGTGTACAGTTGTGGTGGATGAAGCCAATACCGCCTGTAAGCTACAGGATAAAAAGAGACTACTACTAA
CircID chr3:49028248|49028508
ORF Type ORF4
Protein Length 39
Nucleotide Length 117
Protein Sequence MESLLLPPHPMGLTAIAMAIPASVTVSMGEETSGVLRVI
Nucleotide Sequence ATGGAGTCCTTGCTCCTTCCCCCACACCCCATGGGGCTCACCGCCATTGCTATGGCCATCCCAGCCTCTGTGACTGTGTCCATGGGAGAGGAAACCAGTGGGGTCTTAAGAGTGATT
CircID chr3:49028248|49028508
ORF Type ORF5
Protein Length 31
Nucleotide Length 96
Protein Sequence MNAFGERRWSPCSFPHTPWGSPPLLWPSQPL
Nucleotide Sequence CTGAATGCCTTTGGGGAAAGGCGATGGAGTCCTTGCTCCTTCCCCCACACCCCATGGGGCTCACCGCCATTGCTATGGCCATCCCAGCCTCTGTGA
CircID chr3:49028248|49028508
ORF Type ORF6
Protein Length 46
Nucleotide Length 141
Protein Sequence MVSSPMDTVTEAGMAIAMAVSPMGCGGRSKDSIAFPQRHSVLLLVT
Nucleotide Sequence CTGGTTTCCTCTCCCATGGACACAGTCACAGAGGCTGGGATGGCCATAGCAATGGCGGTGAGCCCCATGGGGTGTGGGGGAAGGAGCAAGGACTCCATCGCCTTTCCCCAAAGGCATTCAGTCCTGCTTCTTGTCACTTAG
CircID chr3:49028248|49028508
ORF Type ORF7
Protein Length 35
Nucleotide Length 108
Protein Sequence MSLSSSLFLSCSLQAVLASSTTTVHLNSRPMKFGK
Nucleotide Sequence TTGTCACTTAGTAGTAGTCTCTTTTTATCCTGTAGCTTACAGGCGGTATTGGCTTCATCCACCACAACTGTACACCTGAATTCCAGGCCAATGAAGTTCGGAAAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab