CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49057656|49057828
Strand +
CircType exon
Host Gene ENSG00000198218.9;
Algorism CIRI2;
Sequence CGTTCACCAGCCTACTGAGCAACCCATCCAGGTCCAGGTGCAGATCCAAGGCCAGGCACCACAGTCAGCAGCCCCCTCCATTCAGACCCCGTCTCTGCAGAGTCCCAGTCCCTCGCAGCTGCAAGCAGCTCAGATCCAGGTGCAGCACGTGCAAGCAGCCCAGCAGATCCAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49057656|49057828 hsa-miR-492 0 0 1
chr3:49057656|49057828 hsa-miR-558 0 0 1
chr3:49057656|49057828 hsa-miR-619-5p 0 0 1
chr3:49057656|49057828 hsa-miR-619-3p 0 0 1
chr3:49057656|49057828 hsa-miR-631 0 0 1
chr3:49057656|49057828 hsa-miR-661 1 0 1
chr3:49057656|49057828 hsa-miR-1301-5p 0 0 1
chr3:49057656|49057828 hsa-miR-1301-3p 0 0 1
chr3:49057656|49057828 hsa-miR-936 0 0 1
chr3:49057656|49057828 hsa-miR-943 0 1 1
chr3:49057656|49057828 hsa-miR-1178-5p 0 0 1
chr3:49057656|49057828 hsa-miR-1178-3p 0 0 1
chr3:49057656|49057828 hsa-miR-1205 0 0 1
chr3:49057656|49057828 hsa-miR-1184 0 0 1
chr3:49057656|49057828 hsa-miR-483-5p 0 1 1
chr3:49057656|49057828 hsa-miR-628-5p 0 0 1
chr3:49057656|49057828 hsa-miR-199b-3p 0 0 1
chr3:49057656|49057828 hsa-miR-199a-3p 0 0 1
chr3:49057656|49057828 hsa-miR-550 0 0 1
chr3:49057656|49057828 hsa-miR-138 0 0 1
chr3:49057656|49057828 hsa-miR-1254 0 0 1
chr3:49057656|49057828 hsa-miR-422a 1 0 0
chr3:49057656|49057828 hsa-miR-557 0 1 0
chr3:49057656|49057828 hsa-miR-762 1 0 0
chr3:49057656|49057828 hsa-miR-760 1 0 0
chr3:49057656|49057828 hsa-miR-1303 1 0 0
chr3:49057656|49057828 hsa-miR-2861 1 0 0
chr3:49057656|49057828 hsa-miR-378b 1 0 0
chr3:49057656|49057828 hsa-miR-3176 0 1 0
chr3:49057656|49057828 hsa-miR-378c 1 0 0
chr3:49057656|49057828 hsa-miR-4298 1 0 0
chr3:49057656|49057828 hsa-miR-4303 0 1 0
chr3:49057656|49057828 hsa-miR-4327 1 1 0
chr3:49057656|49057828 hsa-miR-3661 1 0 0
chr3:49057656|49057828 hsa-miR-3665 1 0 0
chr3:49057656|49057828 hsa-miR-1268b 1 0 0
chr3:49057656|49057828 hsa-miR-378e 1 0 0
chr3:49057656|49057828 hsa-miR-378f 1 0 0
chr3:49057656|49057828 hsa-miR-4492 1 0 0
chr3:49057656|49057828 hsa-miR-4498 1 0 0
chr3:49057656|49057828 hsa-miR-4505 1 0 0
chr3:49057656|49057828 hsa-miR-4507 1 1 0
chr3:49057656|49057828 hsa-miR-4515 1 1 0
chr3:49057656|49057828 hsa-miR-4535 1 1 0
chr3:49057656|49057828 hsa-miR-1587 1 0 0
chr3:49057656|49057828 hsa-miR-3960 1 0 0
chr3:49057656|49057828 hsa-miR-4651 1 0 0
chr3:49057656|49057828 hsa-miR-4656 1 0 0
chr3:49057656|49057828 hsa-miR-4663 0 1 0
chr3:49057656|49057828 hsa-miR-4686 1 1 0
chr3:49057656|49057828 hsa-miR-4689 1 0 0
chr3:49057656|49057828 hsa-miR-4734 1 0 0
chr3:49057656|49057828 hsa-miR-4741 1 0 0
chr3:49057656|49057828 hsa-miR-5047 0 1 0
chr3:49057656|49057828 hsa-miR-5787 1 0 0
chr3:49057656|49057828 hsa-miR-6085 1 0 0
chr3:49057656|49057828 hsa-miR-6127 1 0 0
chr3:49057656|49057828 hsa-miR-7974 1 0 0
chr3:49057656|49057828 hsa-miR-8057 1 0 0
chr3:49057656|49057828 hsa-miR-8077 1 0 0
chr3:49057656|49057828 hsa-miR-8089 1 0 0
chr3:49057656|49057828 hsa-miR-9718 0 1 0
chr3:49057656|49057828 hsa-miR-1843 0 1 0
chr3:49057656|49057828 hsa-miR-12119 1 0 0
chr3:49057656|49057828 hsa-miR-370-3p 1 0 0
chr3:49057656|49057828 hsa-miR-6765-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6861-5p 1 0 0
chr3:49057656|49057828 hsa-miR-4687-3p 1 0 0
chr3:49057656|49057828 hsa-miR-139-3p 1 0 0
chr3:49057656|49057828 hsa-miR-6515-5p 0 1 0
chr3:49057656|49057828 hsa-miR-6089 1 0 0
chr3:49057656|49057828 hsa-miR-3192-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6762-3p 0 1 0
chr3:49057656|49057828 hsa-miR-3187-3p 1 0 0
chr3:49057656|49057828 hsa-miR-7845-5p 1 0 0
chr3:49057656|49057828 hsa-miR-1915-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6793-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6829-5p 1 1 0
chr3:49057656|49057828 hsa-miR-6732-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6805-5p 1 1 0
chr3:49057656|49057828 hsa-miR-3130-3p 1 1 0
chr3:49057656|49057828 hsa-miR-4793-3p 0 1 0
chr3:49057656|49057828 hsa-miR-6765-3p 0 1 0
chr3:49057656|49057828 hsa-miR-615-5p 1 0 0
chr3:49057656|49057828 hsa-miR-3944-3p 1 0 0
chr3:49057656|49057828 hsa-miR-4640-5p 1 0 0
chr3:49057656|49057828 hsa-miR-5004-3p 1 1 0
chr3:49057656|49057828 hsa-miR-3614-5p 1 1 0
chr3:49057656|49057828 hsa-miR-6749-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6834-5p 1 1 0
chr3:49057656|49057828 hsa-miR-4638-3p 1 0 0
chr3:49057656|49057828 hsa-miR-149-3p 1 0 0
chr3:49057656|49057828 hsa-miR-3158-5p 0 1 0
chr3:49057656|49057828 hsa-miR-4776-5p 1 0 0
chr3:49057656|49057828 hsa-miR-7152-3p 1 0 0
chr3:49057656|49057828 hsa-miR-2277-5p 1 0 0
chr3:49057656|49057828 hsa-miR-3675-5p 1 0 0
chr3:49057656|49057828 hsa-miR-500a-3p 1 1 0
chr3:49057656|49057828 hsa-miR-1207-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6787-5p 1 0 0
chr3:49057656|49057828 hsa-miR-5001-5p 1 1 0
chr3:49057656|49057828 hsa-miR-6743-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6754-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6756-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6813-5p 1 1 0
chr3:49057656|49057828 hsa-miR-6751-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6779-5p 1 0 0
chr3:49057656|49057828 hsa-miR-3620-5p 1 0 0
chr3:49057656|49057828 hsa-miR-10396b-5p 1 0 0
chr3:49057656|49057828 hsa-miR-1237-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6794-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6795-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6846-5p 1 1 0
chr3:49057656|49057828 hsa-miR-6848-5p 1 0 0
chr3:49057656|49057828 hsa-miR-3187-5p 1 0 0
chr3:49057656|49057828 hsa-miR-3199 0 1 0
chr3:49057656|49057828 hsa-miR-4758-5p 1 0 0
chr3:49057656|49057828 hsa-miR-365a-5p 1 0 0
chr3:49057656|49057828 hsa-miR-365b-5p 1 0 0
chr3:49057656|49057828 hsa-miR-3085-5p 1 0 0
chr3:49057656|49057828 hsa-miR-6891-5p 1 0 0
chr3:49057656|49057828 hsa-miR-378a-3p 1 0 0
chr3:49057656|49057828 hsa-miR-6753-3p 1 0 0
chr3:49057656|49057828 hsa-miR-5009-5p 1 0 0
chr3:49057656|49057828 hsa-miR-502-3p 1 1 0
chr3:49057656|49057828 hsa-miR-372-3p 1 0 0
chr3:49057656|49057828 hsa-miR-217-5p 1 0 0
chr3:49057656|49057828 hsa-miR-378d 1 0 0
chr3:49057656|49057828 hsa-miR-3922-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:49057656|49057828
ORF Type ORF1
Protein Length 26
Nucleotide Length 78
Protein Sequence MQSPSPSQLQAAQIQVQHVQAAQQIQ
Nucleotide Sequence CTGCAGAGTCCCAGTCCCTCGCAGCTGCAAGCAGCTCAGATCCAGGTGCAGCACGTGCAAGCAGCCCAGCAGATCCAG
CircID chr3:49057656|49057828
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MSNPSRSRCRSKARHHSQQPPPFRPRLCRVPVPRSCKQLRSRCSTCKQPSRSR
Nucleotide Sequence CTGAGCAACCCATCCAGGTCCAGGTGCAGATCCAAGGCCAGGCACCACAGTCAGCAGCCCCCTCCATTCAGACCCCGTCTCTGCAGAGTCCCAGTCCCTCGCAGCTGCAAGCAGCTCAGATCCAGGTGCAGCACGTGCAAGCAGCCCAGCAGATCCAGG
CircID chr3:49057656|49057828
ORF Type ORF3
Protein Length 48
Nucleotide Length 147
Protein Sequence MLARAAPGSELLAAARDWDSAETGSEWRGLLTVVPGLGSAPGPGWVAQ
Nucleotide Sequence CTGCTTGCACGTGCTGCACCTGGATCTGAGCTGCTTGCAGCTGCGAGGGACTGGGACTCTGCAGAGACGGGGTCTGAATGGAGGGGGCTGCTGACTGTGGTGCCTGGCCTTGGATCTGCACCTGGACCTGGATGGGTTGCTCAGTAG
CircID chr3:49057656|49057828
ORF Type ORF4
Protein Length 35
Nucleotide Length 108
Protein Sequence LDLLGCLHVLHLDLSCLQLRGTGTLQRRGLNGGGC
Nucleotide Sequence CTGGATCTGCTGGGCTGCTTGCACGTGCTGCACCTGGATCTGAGCTGCTTGCAGCTGCGAGGGACTGGGACTCTGCAGAGACGGGGTCTGAATGGAGGGGGCTGCTGA
CircID chr3:49057656|49057828
ORF Type ORF5
Protein Length 25
Nucleotide Length 78
Protein Sequence MEGAADCGAWPWICTWTWMGCSVGW
Nucleotide Sequence ATGGAGGGGGCTGCTGACTGTGGTGCCTGGCCTTGGATCTGCACCTGGACCTGGATGGGTTGCTCAGTAGGCTGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab