CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49099578|49099828
Strand +
CircType exon
Host Gene ENSG00000172053.13;
Algorism CIRI2;
Sequence ACACACTGCCTCTGTGACTCCATCGAGCACATCACTCACTCACTCTGCACCAAGGAATTCCAGGCCCGGTGAGGGAGCTGGGTCCATGGGGTGGTAGGGCCAGTGGAATTCCAGCAGCCCTTCCTGTGGTCTCTGCCTGGTTCCAGAGCTGGCCAGTGCTAACCCTACTCTCCCACCCCAGACGCTCTTCCTACTTCTGGCTTTGCAATGCACTGGACGTCTATTGCCCTGTGCAGTGGGAGTATGGCCGC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49099578|49099828 hsa-miR-33a-5p 0 0 1
chr3:49099578|49099828 hsa-miR-33a-3p 0 0 1
chr3:49099578|49099828 hsa-miR-148a-5p 0 0 1
chr3:49099578|49099828 hsa-miR-148a-3p 0 0 1
chr3:49099578|49099828 hsa-miR-34a-5p 0 0 1
chr3:49099578|49099828 hsa-miR-34a-3p 0 0 1
chr3:49099578|49099828 hsa-miR-152-5p 0 0 1
chr3:49099578|49099828 hsa-miR-152-3p 0 0 1
chr3:49099578|49099828 hsa-miR-328-5p 0 0 1
chr3:49099578|49099828 hsa-miR-328-3p 0 0 1
chr3:49099578|49099828 hsa-miR-148b-5p 0 0 1
chr3:49099578|49099828 hsa-miR-148b-3p 0 0 1
chr3:49099578|49099828 hsa-miR-449a 0 0 1
chr3:49099578|49099828 hsa-miR-193b-5p 0 0 1
chr3:49099578|49099828 hsa-miR-193b-3p 0 0 1
chr3:49099578|49099828 hsa-miR-527 0 0 1
chr3:49099578|49099828 hsa-miR-608 0 0 1
chr3:49099578|49099828 hsa-miR-33b-5p 0 0 1
chr3:49099578|49099828 hsa-miR-33b-3p 0 0 1
chr3:49099578|49099828 hsa-miR-637 0 0 1
chr3:49099578|49099828 hsa-miR-449b-5p 0 0 1
chr3:49099578|49099828 hsa-miR-449b-3p 0 0 1
chr3:49099578|49099828 hsa-miR-1287-5p 0 0 1
chr3:49099578|49099828 hsa-miR-1287-3p 0 0 1
chr3:49099578|49099828 hsa-miR-1291 0 0 1
chr3:49099578|49099828 hsa-miR-1299 1 0 1
chr3:49099578|49099828 hsa-miR-1825 0 0 1
chr3:49099578|49099828 hsa-miR-1827 0 0 1
chr3:49099578|49099828 hsa-miR-532-3p 0 0 1
chr3:49099578|49099828 hsa-miR-296-3p 0 0 1
chr3:49099578|49099828 hsa-miR-199a-5p 0 0 1
chr3:49099578|49099828 hsa-miR-1289 0 0 1
chr3:49099578|49099828 hsa-miR-502-5p 0 0 1
chr3:49099578|49099828 hsa-miR-875-3p 0 0 1
chr3:49099578|49099828 hsa-miR-140-3p 0 0 1
chr3:49099578|49099828 hsa-miR-199b-5p 0 0 1
chr3:49099578|49099828 hsa-miR-342-5p 0 0 1
chr3:49099578|49099828 hsa-miR-34c-5p 0 0 1
chr3:49099578|49099828 hsa-miR-518a-5p 0 0 1
chr3:49099578|49099828 hsa-miR-193a-3p 0 0 1
chr3:49099578|49099828 hsa-miR-220c 0 0 1
chr3:49099578|49099828 hsa-miR-1254 0 0 1
chr3:49099578|49099828 hsa-miR-762 1 0 0
chr3:49099578|49099828 hsa-miR-1268a 1 0 0
chr3:49099578|49099828 hsa-miR-2861 1 0 0
chr3:49099578|49099828 hsa-miR-3132 1 0 0
chr3:49099578|49099828 hsa-miR-1268b 1 0 0
chr3:49099578|49099828 hsa-miR-4448 1 0 0
chr3:49099578|49099828 hsa-miR-4651 1 0 0
chr3:49099578|49099828 hsa-miR-4656 1 0 0
chr3:49099578|49099828 hsa-miR-4669 1 0 0
chr3:49099578|49099828 hsa-miR-4673 1 0 0
chr3:49099578|49099828 hsa-miR-4739 1 0 0
chr3:49099578|49099828 hsa-miR-5698 1 0 0
chr3:49099578|49099828 hsa-miR-5787 1 0 0
chr3:49099578|49099828 hsa-miR-6127 1 0 0
chr3:49099578|49099828 hsa-miR-8089 1 0 0
chr3:49099578|49099828 hsa-miR-4433a-3p 1 0 0
chr3:49099578|49099828 hsa-miR-25-5p 1 0 0
chr3:49099578|49099828 hsa-miR-197-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6742-5p 1 0 0
chr3:49099578|49099828 hsa-miR-3180-3p 1 0 0
chr3:49099578|49099828 hsa-miR-6772-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6796-5p 1 0 0
chr3:49099578|49099828 hsa-miR-185-3p 1 0 0
chr3:49099578|49099828 hsa-miR-2467-3p 1 0 0
chr3:49099578|49099828 hsa-miR-6782-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6821-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6740-5p 1 0 0
chr3:49099578|49099828 hsa-miR-4640-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6753-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6757-3p 1 0 0
chr3:49099578|49099828 hsa-miR-6749-5p 1 0 0
chr3:49099578|49099828 hsa-miR-149-3p 1 0 0
chr3:49099578|49099828 hsa-miR-3162-5p 1 0 0
chr3:49099578|49099828 hsa-miR-574-5p 1 0 0
chr3:49099578|49099828 hsa-miR-3189-3p 1 0 0
chr3:49099578|49099828 hsa-miR-1207-5p 1 0 0
chr3:49099578|49099828 hsa-miR-4763-3p 1 0 0
chr3:49099578|49099828 hsa-miR-6803-5p 1 0 0
chr3:49099578|49099828 hsa-miR-7107-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6735-5p 1 0 0
chr3:49099578|49099828 hsa-miR-675-5p 1 0 0
chr3:49099578|49099828 hsa-miR-4758-5p 1 0 0
chr3:49099578|49099828 hsa-miR-3940-5p 1 0 0
chr3:49099578|49099828 hsa-miR-4646-5p 1 0 0
chr3:49099578|49099828 hsa-miR-362-5p 1 0 0
chr3:49099578|49099828 hsa-miR-6824-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49099578|49099828
ORF Type ORF1
Protein Length 38
Nucleotide Length 114
Protein Sequence MVPELASANPTLPPQTLFLLLALQCTGRLLPCAVGVWP
Nucleotide Sequence CTGGTTCCAGAGCTGGCCAGTGCTAACCCTACTCTCCCACCCCAGACGCTCTTCCTACTTCTGGCTTTGCAATGCACTGGACGTCTATTGCCCTGTGCAGTGGGAGTATGGCCG
CircID chr3:49099578|49099828
ORF Type ORF2
Protein Length 69
Nucleotide Length 207
Protein Sequence MHQGIPGPVRELGPWGGRASGIPAALPVVSAWFQSWPVLTLLSHPRRSSYFWLCNALDVYCPVQWEYGR
Nucleotide Sequence CTGCACCAAGGAATTCCAGGCCCGGTGAGGGAGCTGGGTCCATGGGGTGGTAGGGCCAGTGGAATTCCAGCAGCCCTTCCTGTGGTCTCTGCCTGGTTCCAGAGCTGGCCAGTGCTAACCCTACTCTCCCACCCCAGACGCTCTTCCTACTTCTGGCTTTGCAATGCACTGGACGTCTATTGCCCTGTGCAGTGGGAGTATGGCCGC
CircID chr3:49099578|49099828
ORF Type ORF3
Protein Length 36
Nucleotide Length 111
Protein Sequence MEPGRDHRKGCWNSTGPTTPWTQLPHRAWNSLVQSE
Nucleotide Sequence CTGGAACCAGGCAGAGACCACAGGAAGGGCTGCTGGAATTCCACTGGCCCTACCACCCCATGGACCCAGCTCCCTCACCGGGCCTGGAATTCCTTGGTGCAGAGTGAGTGA
CircID chr3:49099578|49099828
ORF Type ORF4
Protein Length 49
Nucleotide Length 150
Protein Sequence MGWESRVSTGQLWNQAETTGRAAGIPLALPPHGPSSLTGPGIPWCRVSE
Nucleotide Sequence CTGGGGTGGGAGAGTAGGGTTAGCACTGGCCAGCTCTGGAACCAGGCAGAGACCACAGGAAGGGCTGCTGGAATTCCACTGGCCCTACCACCCCATGGACCCAGCTCCCTCACCGGGCCTGGAATTCCTTGGTGCAGAGTGAGTGAGTGA
CircID chr3:49099578|49099828
ORF Type ORF5
Protein Length 38
Nucleotide Length 117
Protein Sequence MASSGTRQRPQEGLLEFHWPYHPMDPAPSPGLEFLGAE
Nucleotide Sequence CTGGCCAGCTCTGGAACCAGGCAGAGACCACAGGAAGGGCTGCTGGAATTCCACTGGCCCTACCACCCCATGGACCCAGCTCCCTCACCGGGCCTGGAATTCCTTGGTGCAGAGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab