CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49116824|49117220
Strand -
CircType exon
Host Gene ENSG00000172046.17;
Algorism CIRI2;
Sequence TGGGTCATTCCCGGGAGGCACTGCTTTCTCTCCTGCCAAAGGGGCTAAATTCTCCTCTGAGCCCAGGAGGCAGGTTTGGGAGTTCAGCGGTGGTATGCAAAGCTGTTCATCAGCCTCAACCTATTAATGGCAAGATTGTGGAAAGAATCAGCCCTGGGTCTGCCAGGTGGCTCCCACTCCAGTGCACACCCTTTCCCCCCATCTCCTAACACCCAAACAGGTGCCCAGCTCTCACCTGGGTGGCTGGGTCAGCCACGAAGGGTGGGGCATCACCCCGGGGTCCAGGGTCATCCCTGGACCCGTCCCCCTCTGGCCCTCTGCAGAGATGCACAGCCCTCTTGGCGCTGGGCCCTGCCTGGGCCCCGGGGCCAGCCCCTGCGCCTACCTCACCACGGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49116824|49117220 hsa-let-7b-5p 0 0 1
chr3:49116824|49117220 hsa-let-7b-3p 0 0 1
chr3:49116824|49117220 hsa-let-7c-5p 0 0 1
chr3:49116824|49117220 hsa-let-7c-3p 0 0 1
chr3:49116824|49117220 hsa-let-7d-5p 0 0 1
chr3:49116824|49117220 hsa-let-7d-3p 0 0 1
chr3:49116824|49117220 hsa-let-7e-5p 0 0 1
chr3:49116824|49117220 hsa-let-7e-3p 0 0 1
chr3:49116824|49117220 hsa-miR-96-5p 0 0 1
chr3:49116824|49117220 hsa-miR-96-3p 0 0 1
chr3:49116824|49117220 hsa-miR-98-5p 0 0 1
chr3:49116824|49117220 hsa-miR-98-3p 0 0 1
chr3:49116824|49117220 hsa-miR-182-5p 0 0 1
chr3:49116824|49117220 hsa-miR-182-3p 0 0 1
chr3:49116824|49117220 hsa-let-7g-5p 0 0 1
chr3:49116824|49117220 hsa-let-7g-3p 0 0 1
chr3:49116824|49117220 hsa-let-7i-5p 0 0 1
chr3:49116824|49117220 hsa-let-7i-3p 0 0 1
chr3:49116824|49117220 hsa-miR-122-5p 0 0 1
chr3:49116824|49117220 hsa-miR-122-3p 0 0 1
chr3:49116824|49117220 hsa-miR-150-5p 0 0 1
chr3:49116824|49117220 hsa-miR-150-3p 0 0 1
chr3:49116824|49117220 hsa-miR-185-5p 0 0 1
chr3:49116824|49117220 hsa-miR-185-3p 0 0 1
chr3:49116824|49117220 hsa-miR-448 0 0 1
chr3:49116824|49117220 hsa-miR-202-5p 0 0 1
chr3:49116824|49117220 hsa-miR-202-3p 0 0 1
chr3:49116824|49117220 hsa-miR-519e-5p 0 0 1
chr3:49116824|49117220 hsa-miR-519e-3p 0 0 1
chr3:49116824|49117220 hsa-miR-504-5p 0 0 1
chr3:49116824|49117220 hsa-miR-504-3p 0 0 1
chr3:49116824|49117220 hsa-miR-609 0 0 1
chr3:49116824|49117220 hsa-miR-612 1 0 1
chr3:49116824|49117220 hsa-miR-625-5p 0 0 1
chr3:49116824|49117220 hsa-miR-625-3p 0 0 1
chr3:49116824|49117220 hsa-miR-633 0 0 1
chr3:49116824|49117220 hsa-miR-1271-5p 0 0 1
chr3:49116824|49117220 hsa-miR-1271-3p 0 0 1
chr3:49116824|49117220 hsa-miR-920 0 0 1
chr3:49116824|49117220 hsa-miR-940 0 1 1
chr3:49116824|49117220 hsa-miR-1204 0 0 1
chr3:49116824|49117220 hsa-miR-1205 0 0 1
chr3:49116824|49117220 hsa-miR-1294 0 1 1
chr3:49116824|49117220 hsa-miR-1304-5p 0 0 1
chr3:49116824|49117220 hsa-miR-1304-3p 0 0 1
chr3:49116824|49117220 hsa-miR-1258 0 0 1
chr3:49116824|49117220 hsa-miR-1262 0 0 1
chr3:49116824|49117220 hsa-miR-125a-3p 0 1 1
chr3:49116824|49117220 hsa-miR-485-5p 1 0 1
chr3:49116824|49117220 hsa-miR-1184 0 0 1
chr3:49116824|49117220 hsa-miR-1207-5p 1 1 1
chr3:49116824|49117220 hsa-miR-515-3p 0 0 1
chr3:49116824|49117220 hsa-miR-153 0 0 1
chr3:49116824|49117220 hsa-let-7a 0 0 1
chr3:49116824|49117220 hsa-let-7f 0 0 1
chr3:49116824|49117220 hsa-miR-1285 0 0 1
chr3:49116824|49117220 hsa-miR-24 0 0 1
chr3:49116824|49117220 hsa-miR-571 0 1 0
chr3:49116824|49117220 hsa-miR-762 1 1 0
chr3:49116824|49117220 hsa-miR-2110 1 0 0
chr3:49116824|49117220 hsa-miR-3147 1 0 0
chr3:49116824|49117220 hsa-miR-3154 1 0 0
chr3:49116824|49117220 hsa-miR-4306 0 1 0
chr3:49116824|49117220 hsa-miR-3659 1 0 0
chr3:49116824|49117220 hsa-miR-3929 1 1 0
chr3:49116824|49117220 hsa-miR-3936 1 0 0
chr3:49116824|49117220 hsa-miR-378g 0 1 0
chr3:49116824|49117220 hsa-miR-4437 0 1 0
chr3:49116824|49117220 hsa-miR-4440 1 0 0
chr3:49116824|49117220 hsa-miR-4449 1 0 0
chr3:49116824|49117220 hsa-miR-4458 0 1 0
chr3:49116824|49117220 hsa-miR-4492 0 1 0
chr3:49116824|49117220 hsa-miR-4498 1 0 0
chr3:49116824|49117220 hsa-miR-2392 1 0 0
chr3:49116824|49117220 hsa-miR-4507 1 0 0
chr3:49116824|49117220 hsa-miR-4525 1 0 0
chr3:49116824|49117220 hsa-miR-1587 1 0 0
chr3:49116824|49117220 hsa-miR-4644 0 1 0
chr3:49116824|49117220 hsa-miR-4654 1 0 0
chr3:49116824|49117220 hsa-miR-4656 1 0 0
chr3:49116824|49117220 hsa-miR-4663 0 1 0
chr3:49116824|49117220 hsa-miR-4673 0 1 0
chr3:49116824|49117220 hsa-miR-4689 1 0 0
chr3:49116824|49117220 hsa-miR-4710 0 1 0
chr3:49116824|49117220 hsa-miR-4721 1 0 0
chr3:49116824|49117220 hsa-miR-4741 1 0 0
chr3:49116824|49117220 hsa-miR-4784 1 0 0
chr3:49116824|49117220 hsa-miR-5681a 1 1 0
chr3:49116824|49117220 hsa-miR-5698 1 0 0
chr3:49116824|49117220 hsa-miR-6085 1 1 0
chr3:49116824|49117220 hsa-miR-6086 1 0 0
chr3:49116824|49117220 hsa-miR-7150 0 1 0
chr3:49116824|49117220 hsa-miR-7974 0 1 0
chr3:49116824|49117220 hsa-miR-8073 0 1 0
chr3:49116824|49117220 hsa-miR-8075 0 1 0
chr3:49116824|49117220 hsa-miR-8089 1 0 0
chr3:49116824|49117220 hsa-miR-11400 1 1 0
chr3:49116824|49117220 hsa-miR-500b-3p 0 1 0
chr3:49116824|49117220 hsa-miR-6747-3p 0 1 0
chr3:49116824|49117220 hsa-miR-6836-3p 0 1 0
chr3:49116824|49117220 hsa-miR-4687-3p 1 0 0
chr3:49116824|49117220 hsa-miR-6728-5p 1 0 0
chr3:49116824|49117220 hsa-miR-5187-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6757-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6873-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6880-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6744-5p 0 1 0
chr3:49116824|49117220 hsa-miR-4722-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6730-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6741-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6806-5p 1 0 0
chr3:49116824|49117220 hsa-miR-197-5p 1 0 0
chr3:49116824|49117220 hsa-miR-8069 1 0 0
chr3:49116824|49117220 hsa-miR-6742-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6716-5p 1 0 0
chr3:49116824|49117220 hsa-miR-659-3p 1 0 0
chr3:49116824|49117220 hsa-miR-1292-5p 1 0 0
chr3:49116824|49117220 hsa-miR-3180-3p 1 0 0
chr3:49116824|49117220 hsa-miR-6748-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6772-5p 1 0 0
chr3:49116824|49117220 hsa-miR-4725-5p 0 1 0
chr3:49116824|49117220 hsa-miR-6805-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6827-5p 0 1 0
chr3:49116824|49117220 hsa-miR-23a-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6798-5p 1 0 0
chr3:49116824|49117220 hsa-miR-2467-3p 0 1 0
chr3:49116824|49117220 hsa-miR-6782-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6765-3p 0 1 0
chr3:49116824|49117220 hsa-miR-3194-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6786-5p 1 0 0
chr3:49116824|49117220 hsa-miR-5088-5p 1 0 0
chr3:49116824|49117220 hsa-miR-7109-5p 1 0 0
chr3:49116824|49117220 hsa-miR-1226-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6740-5p 1 1 0
chr3:49116824|49117220 hsa-miR-3944-3p 1 0 0
chr3:49116824|49117220 hsa-miR-6784-5p 0 1 0
chr3:49116824|49117220 hsa-miR-4640-5p 0 1 0
chr3:49116824|49117220 hsa-miR-4691-3p 0 1 0
chr3:49116824|49117220 hsa-miR-6823-5p 1 0 0
chr3:49116824|49117220 hsa-miR-92b-5p 0 1 0
chr3:49116824|49117220 hsa-miR-6847-5p 0 1 0
chr3:49116824|49117220 hsa-miR-3690 0 1 0
chr3:49116824|49117220 hsa-miR-4446-3p 1 1 0
chr3:49116824|49117220 hsa-miR-149-3p 1 0 0
chr3:49116824|49117220 hsa-miR-3616-3p 1 0 0
chr3:49116824|49117220 hsa-miR-6824-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6789-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6802-5p 1 0 0
chr3:49116824|49117220 hsa-miR-3158-5p 0 1 0
chr3:49116824|49117220 hsa-miR-5010-5p 1 0 0
chr3:49116824|49117220 hsa-miR-887-5p 1 1 0
chr3:49116824|49117220 hsa-miR-1225-5p 1 0 0
chr3:49116824|49117220 hsa-miR-660-3p 0 1 0
chr3:49116824|49117220 hsa-miR-3158-3p 1 0 0
chr3:49116824|49117220 hsa-miR-4758-3p 0 1 0
chr3:49116824|49117220 hsa-miR-4727-3p 1 1 0
chr3:49116824|49117220 hsa-miR-744-5p 0 1 0
chr3:49116824|49117220 hsa-miR-7113-5p 0 1 0
chr3:49116824|49117220 hsa-miR-4750-3p 0 1 0
chr3:49116824|49117220 hsa-miR-3675-5p 1 0 0
chr3:49116824|49117220 hsa-miR-5587-3p 0 1 0
chr3:49116824|49117220 hsa-miR-3680-3p 0 1 0
chr3:49116824|49117220 hsa-miR-221-5p 0 1 0
chr3:49116824|49117220 hsa-miR-1233-5p 1 1 0
chr3:49116824|49117220 hsa-miR-4763-3p 1 1 0
chr3:49116824|49117220 hsa-miR-6769b-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6778-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6812-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6870-5p 1 0 0
chr3:49116824|49117220 hsa-miR-1343-5p 1 0 0
chr3:49116824|49117220 hsa-miR-5001-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6726-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6743-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6752-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6756-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6803-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6813-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6819-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6851-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6722-3p 1 1 0
chr3:49116824|49117220 hsa-miR-6751-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6774-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6797-5p 1 1 0
chr3:49116824|49117220 hsa-miR-7111-5p 1 0 0
chr3:49116824|49117220 hsa-miR-3620-5p 1 0 0
chr3:49116824|49117220 hsa-miR-5189-5p 1 0 0
chr3:49116824|49117220 hsa-miR-5196-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6780b-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6836-5p 1 1 0
chr3:49116824|49117220 hsa-miR-10396b-5p 1 1 0
chr3:49116824|49117220 hsa-miR-1909-3p 0 1 0
chr3:49116824|49117220 hsa-miR-328-5p 1 0 0
chr3:49116824|49117220 hsa-miR-4649-5p 1 0 0
chr3:49116824|49117220 hsa-miR-4685-5p 1 0 0
chr3:49116824|49117220 hsa-miR-4701-3p 1 0 0
chr3:49116824|49117220 hsa-miR-4726-5p 1 1 0
chr3:49116824|49117220 hsa-miR-4745-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6729-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6794-5p 0 1 0
chr3:49116824|49117220 hsa-miR-6795-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6846-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6848-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6887-5p 1 1 0
chr3:49116824|49117220 hsa-miR-3187-5p 0 1 0
chr3:49116824|49117220 hsa-miR-4723-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6885-5p 1 0 0
chr3:49116824|49117220 hsa-miR-939-5p 1 0 0
chr3:49116824|49117220 hsa-miR-1238-5p 1 0 0
chr3:49116824|49117220 hsa-miR-4758-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6511a-5p 0 1 0
chr3:49116824|49117220 hsa-miR-10396a-3p 0 1 0
chr3:49116824|49117220 hsa-miR-10396b-3p 0 1 0
chr3:49116824|49117220 hsa-miR-3940-5p 1 0 0
chr3:49116824|49117220 hsa-miR-30c-1-3p 1 0 0
chr3:49116824|49117220 hsa-miR-6731-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6773-5p 0 1 0
chr3:49116824|49117220 hsa-miR-4665-5p 1 0 0
chr3:49116824|49117220 hsa-miR-6791-3p 0 1 0
chr3:49116824|49117220 hsa-miR-4716-3p 1 1 0
chr3:49116824|49117220 hsa-miR-6791-5p 0 1 0
chr3:49116824|49117220 hsa-miR-10400-3p 0 1 0
chr3:49116824|49117220 hsa-miR-6884-5p 1 1 0
chr3:49116824|49117220 hsa-miR-6783-3p 0 1 0
chr3:49116824|49117220 hsa-miR-33b-3p 0 1 0
chr3:49116824|49117220 hsa-miR-6764-5p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:49116824|49117220
ORF Type ORF1
Protein Length 107
Nucleotide Length 321
Protein Sequence MGVQRWYAKLFISLNLLMARLWKESALGLPGGSHSSAHPFPPSPNTQTGAQLSPGWLGQPRRVGHHPGVQGHPWTRPPLALCRDAQPSWRWALPGPRGQPLRLPHHG
Nucleotide Sequence TTGGGAGTTCAGCGGTGGTATGCAAAGCTGTTCATCAGCCTCAACCTATTAATGGCAAGATTGTGGAAAGAATCAGCCCTGGGTCTGCCAGGTGGCTCCCACTCCAGTGCACACCCTTTCCCCCCATCTCCTAACACCCAAACAGGTGCCCAGCTCTCACCTGGGTGGCTGGGTCAGCCACGAAGGGTGGGGCATCACCCCGGGGTCCAGGGTCATCCCTGGACCCGTCCCCCTCTGGCCCTCTGCAGAGATGCACAGCCCTCTTGGCGCTGGGCCCTGCCTGGGCCCCGGGGCCAGCCCCTGCGCCTACCTCACCACGGC
CircID chr3:49116824|49117220
ORF Type ORF2
Protein Length 54
Nucleotide Length 162
Protein Sequence MGGWVSHEGWGITPGSRVIPGPVPLWPSAEMHSPLGAGPCLGPGASPCAYLTTA
Nucleotide Sequence CTGGGTGGCTGGGTCAGCCACGAAGGGTGGGGCATCACCCCGGGGTCCAGGGTCATCCCTGGACCCGTCCCCCTCTGGCCCTCTGCAGAGATGCACAGCCCTCTTGGCGCTGGGCCCTGCCTGGGCCCCGGGGCCAGCCCCTGCGCCTACCTCACCACGGCC
CircID chr3:49116824|49117220
ORF Type ORF3
Protein Length 62
Nucleotide Length 189
Protein Sequence MLSLLPKGLNSPLSPGGRFGSSAVVCKAVHQPQPINGKIVERISPGSARWLPLQCTPFPPIS
Nucleotide Sequence CTGCTTTCTCTCCTGCCAAAGGGGCTAAATTCTCCTCTGAGCCCAGGAGGCAGGTTTGGGAGTTCAGCGGTGGTATGCAAAGCTGTTCATCAGCCTCAACCTATTAATGGCAAGATTGTGGAAAGAATCAGCCCTGGGTCTGCCAGGTGGCTCCCACTCCAGTGCACACCCTTTCCCCCCATCTCCTAA
CircID chr3:49116824|49117220
ORF Type ORF4
Protein Length 34
Nucleotide Length 102
Protein Sequence MDPSPSGPLQRCTALLALGPAWAPGPAPAPTSPR
Nucleotide Sequence CTGGACCCGTCCCCCTCTGGCCCTCTGCAGAGATGCACAGCCCTCTTGGCGCTGGGCCCTGCCTGGGCCCCGGGGCCAGCCCCTGCGCCTACCTCACCACGG
CircID chr3:49116824|49117220
ORF Type ORF5
Protein Length 28
Nucleotide Length 87
Protein Sequence MGGKGVHWSGSHLADPGLILSTILPLIG
Nucleotide Sequence ATGGGGGGAAAGGGTGTGCACTGGAGTGGGAGCCACCTGGCAGACCCAGGGCTGATTCTTTCCACAATCTTGCCATTAATAGGTTGA
CircID chr3:49116824|49117220
ORF Type ORF6
Protein Length 31
Nucleotide Length 96
Protein Sequence MHTTAELPNLPPGLRGEFSPFGRRESSASRE
Nucleotide Sequence TTGCATACCACCGCTGAACTCCCAAACCTGCCTCCTGGGCTCAGAGGAGAATTTAGCCCCTTTGGCAGGAGAGAAAGCAGTGCCTCCCGGGAATGA
CircID chr3:49116824|49117220
ORF Type ORF7
Protein Length 46
Nucleotide Length 141
Protein Sequence MAPGPRQGPAPRGLCISAEGQRGTGPGMTLDPGVMPHPSWLTQPPR
Nucleotide Sequence CTGGCCCCGGGGCCCAGGCAGGGCCCAGCGCCAAGAGGGCTGTGCATCTCTGCAGAGGGCCAGAGGGGGACGGGTCCAGGGATGACCCTGGACCCCGGGGTGATGCCCCACCCTTCGTGGCTGACCCAGCCACCCAGGTGA
CircID chr3:49116824|49117220
ORF Type ORF8
Protein Length 26
Nucleotide Length 81
Protein Sequence MGTCLGVRRWGERVCTGVGATWQTQG
Nucleotide Sequence CTGGGCACCTGTTTGGGTGTTAGGAGATGGGGGGAAAGGGTGTGCACTGGAGTGGGAGCCACCTGGCAGACCCAGGGCTGA
CircID chr3:49116824|49117220
ORF Type ORF9
Protein Length 29
Nucleotide Length 87
Protein Sequence MNSQTCLLGSEENLAPLAGEKAVPPGNDP
Nucleotide Sequence CTGAACTCCCAAACCTGCCTCCTGGGCTCAGAGGAGAATTTAGCCCCTTTGGCAGGAGAGAAAGCAGTGCCTCCCGGGAATGACCCA
CircID chr3:49116824|49117220
ORF Type ORF10
Protein Length 32
Nucleotide Length 99
Protein Sequence MEWEPPGRPRADSFHNLAINRLRLMNSFAYHR
Nucleotide Sequence CTGGAGTGGGAGCCACCTGGCAGACCCAGGGCTGATTCTTTCCACAATCTTGCCATTAATAGGTTGAGGCTGATGAACAGCTTTGCATACCACCGCTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab