CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49121944|49122085
Strand -
CircType exon
Host Gene ENSG00000172037.12;
Algorism CIRI2;
Sequence CTGGTACAGGGTCTGCTCTGTGTCCCGTGTGTCAGCCACTGCCCCCCGGATGGCACCCTGGGCAATACCCTGTGCCCGCTGGGCCTCCTCCAGTGCTGCCTGTACTGTCTCTGCCTTCTGTTTCTCATCCTCAGCCCAGCTC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49121944|49122085 hsa-miR-10a-5p 0 0 1
chr3:49121944|49122085 hsa-miR-10a-3p 0 0 1
chr3:49121944|49122085 hsa-miR-10b-5p 0 0 1
chr3:49121944|49122085 hsa-miR-10b-3p 0 0 1
chr3:49121944|49122085 hsa-miR-34a-5p 0 0 1
chr3:49121944|49122085 hsa-miR-34a-3p 0 0 1
chr3:49121944|49122085 hsa-miR-449a 0 0 1
chr3:49121944|49122085 hsa-miR-504-5p 0 0 1
chr3:49121944|49122085 hsa-miR-504-3p 0 0 1
chr3:49121944|49122085 hsa-miR-539-5p 0 0 1
chr3:49121944|49122085 hsa-miR-539-3p 0 0 1
chr3:49121944|49122085 hsa-miR-602 0 1 1
chr3:49121944|49122085 hsa-miR-449b-5p 0 0 1
chr3:49121944|49122085 hsa-miR-449b-3p 0 0 1
chr3:49121944|49122085 hsa-miR-765 0 0 1
chr3:49121944|49122085 hsa-miR-1255a 0 1 1
chr3:49121944|49122085 hsa-miR-486-5p 0 0 1
chr3:49121944|49122085 hsa-miR-486-3p 0 0 1
chr3:49121944|49122085 hsa-miR-34c-5p 0 0 1
chr3:49121944|49122085 hsa-miR-1255b 0 0 1
chr3:49121944|49122085 hsa-miR-220c 0 0 1
chr3:49121944|49122085 hsa-miR-1185 0 0 1
chr3:49121944|49122085 hsa-miR-101 0 0 1
chr3:49121944|49122085 hsa-miR-637 1 0 0
chr3:49121944|49122085 hsa-miR-762 1 0 0
chr3:49121944|49122085 hsa-miR-298 1 0 0
chr3:49121944|49122085 hsa-miR-665 1 0 0
chr3:49121944|49122085 hsa-miR-3132 1 0 0
chr3:49121944|49122085 hsa-miR-3147 1 0 0
chr3:49121944|49122085 hsa-miR-3185 1 0 0
chr3:49121944|49122085 hsa-miR-4298 1 0 0
chr3:49121944|49122085 hsa-miR-3937 1 0 0
chr3:49121944|49122085 hsa-miR-378g 1 1 0
chr3:49121944|49122085 hsa-miR-4437 1 0 0
chr3:49121944|49122085 hsa-miR-4487 0 1 0
chr3:49121944|49122085 hsa-miR-4498 1 0 0
chr3:49121944|49122085 hsa-miR-4505 1 0 0
chr3:49121944|49122085 hsa-miR-4514 0 1 0
chr3:49121944|49122085 hsa-miR-1587 1 1 0
chr3:49121944|49122085 hsa-miR-4656 1 1 0
chr3:49121944|49122085 hsa-miR-4674 1 0 0
chr3:49121944|49122085 hsa-miR-4675 1 0 0
chr3:49121944|49122085 hsa-miR-4688 1 0 0
chr3:49121944|49122085 hsa-miR-4689 1 0 0
chr3:49121944|49122085 hsa-miR-4692 0 1 0
chr3:49121944|49122085 hsa-miR-4741 1 0 0
chr3:49121944|49122085 hsa-miR-5787 1 0 0
chr3:49121944|49122085 hsa-miR-6125 1 0 0
chr3:49121944|49122085 hsa-miR-6132 1 0 0
chr3:49121944|49122085 hsa-miR-8089 1 0 0
chr3:49121944|49122085 hsa-miR-12119 1 0 0
chr3:49121944|49122085 hsa-miR-6894-5p 1 0 0
chr3:49121944|49122085 hsa-miR-25-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6804-5p 1 0 0
chr3:49121944|49122085 hsa-miR-5187-5p 1 1 0
chr3:49121944|49122085 hsa-miR-6089 1 0 0
chr3:49121944|49122085 hsa-miR-6880-5p 1 0 0
chr3:49121944|49122085 hsa-miR-7847-3p 1 0 0
chr3:49121944|49122085 hsa-miR-4695-5p 1 1 0
chr3:49121944|49122085 hsa-miR-7160-5p 1 0 0
chr3:49121944|49122085 hsa-miR-197-5p 1 0 0
chr3:49121944|49122085 hsa-miR-7845-5p 1 0 0
chr3:49121944|49122085 hsa-miR-3605-5p 1 1 0
chr3:49121944|49122085 hsa-miR-3151-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6829-5p 1 0 0
chr3:49121944|49122085 hsa-miR-2467-3p 1 1 0
chr3:49121944|49122085 hsa-miR-5008-5p 1 1 0
chr3:49121944|49122085 hsa-miR-3934-3p 0 1 0
chr3:49121944|49122085 hsa-miR-6835-5p 1 0 0
chr3:49121944|49122085 hsa-miR-7109-5p 1 0 0
chr3:49121944|49122085 hsa-miR-1226-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6771-5p 1 0 0
chr3:49121944|49122085 hsa-miR-4787-5p 1 0 0
chr3:49121944|49122085 hsa-miR-149-3p 1 0 0
chr3:49121944|49122085 hsa-miR-664b-5p 1 0 0
chr3:49121944|49122085 hsa-miR-423-5p 1 0 0
chr3:49121944|49122085 hsa-miR-4750-5p 1 0 0
chr3:49121944|49122085 hsa-miR-214-3p 1 0 0
chr3:49121944|49122085 hsa-miR-503-3p 0 1 0
chr3:49121944|49122085 hsa-miR-6501-3p 0 1 0
chr3:49121944|49122085 hsa-miR-1207-5p 1 0 0
chr3:49121944|49122085 hsa-miR-4763-3p 1 1 0
chr3:49121944|49122085 hsa-miR-6812-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6816-5p 1 0 0
chr3:49121944|49122085 hsa-miR-5001-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6743-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6756-5p 1 0 0
chr3:49121944|49122085 hsa-miR-3620-5p 1 1 0
chr3:49121944|49122085 hsa-miR-5189-5p 1 0 0
chr3:49121944|49122085 hsa-miR-1237-5p 1 0 0
chr3:49121944|49122085 hsa-miR-328-5p 1 1 0
chr3:49121944|49122085 hsa-miR-6735-5p 1 1 0
chr3:49121944|49122085 hsa-miR-6738-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6795-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6848-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6858-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6887-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6831-5p 1 0 0
chr3:49121944|49122085 hsa-miR-6885-5p 1 1 0
chr3:49121944|49122085 hsa-miR-1910-3p 0 1 0
chr3:49121944|49122085 hsa-miR-6511a-5p 0 1 0
chr3:49121944|49122085 hsa-miR-6511b-5p 0 1 0
chr3:49121944|49122085 hsa-miR-3085-5p 1 1 0
chr3:49121944|49122085 hsa-miR-3940-5p 1 0 0
chr3:49121944|49122085 hsa-miR-7843-5p 0 1 0
chr3:49121944|49122085 hsa-miR-7151-3p 0 1 0
chr3:49121944|49122085 hsa-miR-4700-5p 1 1 0
chr3:49121944|49122085 hsa-miR-3679-5p 1 0 0
chr3:49121944|49122085 hsa-miR-4667-5p 1 1 0
chr3:49121944|49122085 hsa-miR-10400-3p 1 0 0
chr3:49121944|49122085 hsa-miR-6764-5p 0 1 0
chr3:49121944|49122085 hsa-miR-2682-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:49121944|49122085
ORF Type ORF1
Protein Length 47
Nucleotide Length 141
Protein Sequence LVQGLLCVPCVSHCPPDGTLGNTLCPLGLLQCCLYCLCLLFLILSPA
Nucleotide Sequence CTGGTACAGGGTCTGCTCTGTGTCCCGTGTGTCAGCCACTGCCCCCCGGATGGCACCCTGGGCAATACCCTGTGCCCGCTGGGCCTCCTCCAGTGCTGCCTGTACTGTCTCTGCCTTCTGTTTCTCATCCTCAGCCCAGCT
CircID chr3:49121944|49122085
ORF Type ORF2
Protein Length 31
Nucleotide Length 93
Protein Sequence MAPWAIPCARWASSSAACTVSAFCFSSSAQL
Nucleotide Sequence ATGGCACCCTGGGCAATACCCTGTGCCCGCTGGGCCTCCTCCAGTGCTGCCTGTACTGTCTCTGCCTTCTGTTTCTCATCCTCAGCCCAGCTC
CircID chr3:49121944|49122085
ORF Type ORF3
Protein Length 41
Nucleotide Length 123
Protein Sequence MCPVCQPLPPGWHPGQYPVPAGPPPVLPVLSLPSVSHPQPS
Nucleotide Sequence CTGTGTCCCGTGTGTCAGCCACTGCCCCCCGGATGGCACCCTGGGCAATACCCTGTGCCCGCTGGGCCTCCTCCAGTGCTGCCTGTACTGTCTCTGCCTTCTGTTTCTCATCCTCAGCCCAGC
CircID chr3:49121944|49122085
ORF Type ORF4
Protein Length 31
Nucleotide Length 93
Protein Sequence MEEAQRAQGIAQGAIRGAVADTRDTEQTLYQ
Nucleotide Sequence CTGGAGGAGGCCCAGCGGGCACAGGGTATTGCCCAGGGTGCCATCCGGGGGGCAGTGGCTGACACACGGGACACAGAGCAGACCCTGTACCAG
CircID chr3:49121944|49122085
ORF Type ORF5
Protein Length 44
Nucleotide Length 132
Protein Sequence MRMRNRRQRQYRQHWRRPSGHRVLPRVPSGGQWLTHGTQSRPCT
Nucleotide Sequence CTGAGGATGAGAAACAGAAGGCAGAGACAGTACAGGCAGCACTGGAGGAGGCCCAGCGGGCACAGGGTATTGCCCAGGGTGCCATCCGGGGGGCAGTGGCTGACACACGGGACACAGAGCAGACCCTGTACC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab