CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49123303|49123546
Strand +
CircType exon
Host Gene ENSG00000172037.12;
Algorism CIRI2;
Sequence CATGCACTAAGTGGTCTGGAGCGAGATAGGCTTGCACTTAATCTCACACTGCGGCAGCTCGACCAGCATCTTGACTTGCTCAAACATTCAAACTTCCTGGGTGAGTTGTTAGCCAACTAGGCAGGTGGACCAGGGTCAGTCTTCAGCTGACTGTCTGCCTCTGCCCAATTTAGGTGCCTATGACAGCATCCGGCATGCCCATAGCCAGTCTGCAGAGGCAGAACGTCGTGCCAATACCTCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49123303|49123546 hsa-let-7b-5p 0 0 1
chr3:49123303|49123546 hsa-let-7b-3p 0 0 1
chr3:49123303|49123546 hsa-let-7c-5p 0 0 1
chr3:49123303|49123546 hsa-let-7c-3p 0 0 1
chr3:49123303|49123546 hsa-let-7d-5p 0 0 1
chr3:49123303|49123546 hsa-let-7d-3p 0 0 1
chr3:49123303|49123546 hsa-let-7e-5p 0 0 1
chr3:49123303|49123546 hsa-let-7e-3p 0 0 1
chr3:49123303|49123546 hsa-miR-22-5p 0 0 1
chr3:49123303|49123546 hsa-miR-22-3p 0 0 1
chr3:49123303|49123546 hsa-miR-96-5p 0 0 1
chr3:49123303|49123546 hsa-miR-96-3p 0 0 1
chr3:49123303|49123546 hsa-miR-98-5p 0 0 1
chr3:49123303|49123546 hsa-miR-98-3p 0 0 1
chr3:49123303|49123546 hsa-let-7g-5p 0 0 1
chr3:49123303|49123546 hsa-let-7g-3p 0 0 1
chr3:49123303|49123546 hsa-let-7i-5p 0 0 1
chr3:49123303|49123546 hsa-let-7i-3p 0 0 1
chr3:49123303|49123546 hsa-miR-130a-5p 0 0 1
chr3:49123303|49123546 hsa-miR-130a-3p 0 0 1
chr3:49123303|49123546 hsa-miR-302a-5p 0 0 1
chr3:49123303|49123546 hsa-miR-302a-3p 0 0 1
chr3:49123303|49123546 hsa-miR-301a-5p 0 0 1
chr3:49123303|49123546 hsa-miR-301a-3p 0 0 1
chr3:49123303|49123546 hsa-miR-130b-5p 0 0 1
chr3:49123303|49123546 hsa-miR-130b-3p 0 0 1
chr3:49123303|49123546 hsa-miR-302b-5p 0 0 1
chr3:49123303|49123546 hsa-miR-302b-3p 0 0 1
chr3:49123303|49123546 hsa-miR-302c-5p 0 0 1
chr3:49123303|49123546 hsa-miR-302c-3p 0 0 1
chr3:49123303|49123546 hsa-miR-302d-5p 0 0 1
chr3:49123303|49123546 hsa-miR-302d-3p 0 0 1
chr3:49123303|49123546 hsa-miR-372-5p 0 0 1
chr3:49123303|49123546 hsa-miR-372-3p 0 0 1
chr3:49123303|49123546 hsa-miR-373-5p 0 0 1
chr3:49123303|49123546 hsa-miR-373-3p 0 0 1
chr3:49123303|49123546 hsa-miR-202-5p 0 0 1
chr3:49123303|49123546 hsa-miR-202-3p 0 0 1
chr3:49123303|49123546 hsa-miR-520e-5p 0 0 1
chr3:49123303|49123546 hsa-miR-520e-3p 0 0 1
chr3:49123303|49123546 hsa-miR-520b-5p 0 0 1
chr3:49123303|49123546 hsa-miR-520b-3p 0 0 1
chr3:49123303|49123546 hsa-miR-504-5p 0 0 1
chr3:49123303|49123546 hsa-miR-504-3p 0 0 1
chr3:49123303|49123546 hsa-miR-558 0 1 1
chr3:49123303|49123546 hsa-miR-564 0 0 1
chr3:49123303|49123546 hsa-miR-626 0 0 1
chr3:49123303|49123546 hsa-miR-1271-5p 0 0 1
chr3:49123303|49123546 hsa-miR-1271-3p 0 0 1
chr3:49123303|49123546 hsa-miR-454-5p 0 0 1
chr3:49123303|49123546 hsa-miR-454-3p 0 0 1
chr3:49123303|49123546 hsa-miR-892b 0 0 1
chr3:49123303|49123546 hsa-miR-301b-5p 0 0 1
chr3:49123303|49123546 hsa-miR-301b-3p 0 0 1
chr3:49123303|49123546 hsa-miR-1205 0 0 1
chr3:49123303|49123546 hsa-miR-302e 0 0 1
chr3:49123303|49123546 hsa-miR-1324 0 0 1
chr3:49123303|49123546 hsa-miR-1827 0 0 1
chr3:49123303|49123546 hsa-miR-1184 0 0 1
chr3:49123303|49123546 hsa-miR-1207-3p 0 0 1
chr3:49123303|49123546 hsa-miR-520d-3p 0 0 1
chr3:49123303|49123546 hsa-miR-519b-3p 0 0 1
chr3:49123303|49123546 hsa-miR-519c-3p 0 0 1
chr3:49123303|49123546 hsa-miR-520a-3p 0 0 1
chr3:49123303|49123546 hsa-miR-520c-3p 0 0 1
chr3:49123303|49123546 hsa-miR-138 0 0 1
chr3:49123303|49123546 hsa-let-7a 0 0 1
chr3:49123303|49123546 hsa-let-7f 0 0 1
chr3:49123303|49123546 hsa-miR-720 0 0 1
chr3:49123303|49123546 hsa-miR-519a 0 0 1
chr3:49123303|49123546 hsa-miR-3166 0 1 0
chr3:49123303|49123546 hsa-miR-3621 1 0 0
chr3:49123303|49123546 hsa-miR-3666 0 1 0
chr3:49123303|49123546 hsa-miR-4741 1 0 0
chr3:49123303|49123546 hsa-miR-8077 1 0 0
chr3:49123303|49123546 hsa-miR-105-3p 1 0 0
chr3:49123303|49123546 hsa-miR-500b-3p 0 1 0
chr3:49123303|49123546 hsa-miR-1247-3p 1 0 0
chr3:49123303|49123546 hsa-miR-4708-5p 1 0 0
chr3:49123303|49123546 hsa-miR-7160-5p 1 1 0
chr3:49123303|49123546 hsa-miR-4725-5p 0 1 0
chr3:49123303|49123546 hsa-miR-2467-3p 0 1 0
chr3:49123303|49123546 hsa-miR-1226-5p 1 0 0
chr3:49123303|49123546 hsa-miR-3944-3p 1 0 0
chr3:49123303|49123546 hsa-miR-5001-3p 0 1 0
chr3:49123303|49123546 hsa-miR-1228-5p 0 1 0
chr3:49123303|49123546 hsa-miR-4743-5p 1 0 0
chr3:49123303|49123546 hsa-miR-6886-5p 1 0 0
chr3:49123303|49123546 hsa-miR-6746-3p 1 0 0
chr3:49123303|49123546 hsa-miR-4750-3p 0 1 0
chr3:49123303|49123546 hsa-miR-5189-5p 0 1 0
chr3:49123303|49123546 hsa-miR-6862-5p 1 1 0
chr3:49123303|49123546 hsa-miR-6735-5p 0 1 0
chr3:49123303|49123546 hsa-miR-10394-3p 1 0 0
chr3:49123303|49123546 hsa-miR-1910-3p 0 1 0
chr3:49123303|49123546 hsa-miR-6511a-5p 0 1 0
chr3:49123303|49123546 hsa-miR-6862-3p 0 1 0
chr3:49123303|49123546 hsa-miR-6764-5p 1 0 0
chr3:49123303|49123546 hsa-miR-664a-5p 0 1 0
chr3:49123303|49123546 hsa-miR-6855-3p 0 1 0
Target Genes
       

Note about Function Analysis:
We also provide this interface that can help researchers to perform GO, KEGG and disease enrichment analysis easily. This function will take around 30 seconds. After the analysis, this page will automatically jump to the result page.

Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

circRNA Open Reading Frame (ORF)
CircID chr3:49123303|49123546
ORF Type ORF1
Protein Length 34
Nucleotide Length 105
Protein Sequence MERDRLALNLTLRQLDQHLDLLKHSNFLGELLAN
Nucleotide Sequence CTGGAGCGAGATAGGCTTGCACTTAATCTCACACTGCGGCAGCTCGACCAGCATCTTGACTTGCTCAAACATTCAAACTTCCTGGGTGAGTTGTTAGCCAACTAG
CircID chr3:49123303|49123546
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MHLISHCGSSTSILTCSNIQTSWVSC
Nucleotide Sequence TTGCACTTAATCTCACACTGCGGCAGCTCGACCAGCATCTTGACTTGCTCAAACATTCAAACTTCCTGGGTGAGTTGTTAG
CircID chr3:49123303|49123546
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MPLPNLGAYDSIRHAHSQSAEAERRANTSA
Nucleotide Sequence CTGCCTCTGCCCAATTTAGGTGCCTATGACAGCATCCGGCATGCCCATAGCCAGTCTGCAGAGGCAGAACGTCGTGCCAATACCTCAGCC
CircID chr3:49123303|49123546
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MFEQVKMLVELPQCEIKCKPISLQTT
Nucleotide Sequence ATGTTTGAGCAAGTCAAGATGCTGGTCGAGCTGCCGCAGTGTGAGATTAAGTGCAAGCCTATCTCGCTCCAGACCACTTAG
CircID chr3:49123303|49123546
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence LRYWHDVLPLQTGYGHAGCCHRHLNWAEADSQLKTDPGPPA
Nucleotide Sequence CTGAGGTATTGGCACGACGTTCTGCCTCTGCAGACTGGCTATGGGCATGCCGGATGCTGTCATAGGCACCTAAATTGGGCAGAGGCAGACAGTCAGCTGAAGACTGACCCTGGTCCACCTGCCTAG
CircID chr3:49123303|49123546
ORF Type ORF6
Protein Length 38
Nucleotide Length 114
Protein Sequence MANNSPRKFECLSKSRCWSSCRSVRLSASLSRSRPLSA
Nucleotide Sequence TTGGCTAACAACTCACCCAGGAAGTTTGAATGTTTGAGCAAGTCAAGATGCTGGTCGAGCTGCCGCAGTGTGAGATTAAGTGCAAGCCTATCTCGCTCCAGACCACTTAGTGCA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab