CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49123303|49123582
Strand +
CircType exon
Host Gene ENSG00000172037.12;
Algorism CIRI2;
Sequence CTGACAGATGTGCAAGATGAGAACTTCAATGCCAACCATGCACTAAGTGGTCTGGAGCGAGATAGGCTTGCACTTAATCTCACACTGCGGCAGCTCGACCAGCATCTTGACTTGCTCAAACATTCAAACTTCCTGGGTGAGTTGTTAGCCAACTAGGCAGGTGGACCAGGGTCAGTCTTCAGCTGACTGTCTGCCTCTGCCCAATTTAGGTGCCTATGACAGCATCCGGCATGCCCATAGCCAGTCTGCAGAGGCAGAACGTCGTGCCAATACCTCAGCC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49123303|49123582 hsa-let-7b-5p 0 0 1
chr3:49123303|49123582 hsa-let-7b-3p 0 0 1
chr3:49123303|49123582 hsa-let-7c-5p 0 0 1
chr3:49123303|49123582 hsa-let-7c-3p 0 0 1
chr3:49123303|49123582 hsa-let-7d-5p 0 0 1
chr3:49123303|49123582 hsa-let-7d-3p 0 0 1
chr3:49123303|49123582 hsa-let-7e-5p 0 0 1
chr3:49123303|49123582 hsa-let-7e-3p 0 0 1
chr3:49123303|49123582 hsa-miR-22-5p 0 0 1
chr3:49123303|49123582 hsa-miR-22-3p 0 0 1
chr3:49123303|49123582 hsa-miR-96-5p 0 0 1
chr3:49123303|49123582 hsa-miR-96-3p 0 0 1
chr3:49123303|49123582 hsa-miR-98-5p 0 0 1
chr3:49123303|49123582 hsa-miR-98-3p 0 0 1
chr3:49123303|49123582 hsa-let-7g-5p 0 0 1
chr3:49123303|49123582 hsa-let-7g-3p 0 0 1
chr3:49123303|49123582 hsa-let-7i-5p 0 0 1
chr3:49123303|49123582 hsa-let-7i-3p 0 0 1
chr3:49123303|49123582 hsa-miR-130a-5p 0 0 1
chr3:49123303|49123582 hsa-miR-130a-3p 0 0 1
chr3:49123303|49123582 hsa-miR-302a-5p 0 0 1
chr3:49123303|49123582 hsa-miR-302a-3p 0 0 1
chr3:49123303|49123582 hsa-miR-301a-5p 0 0 1
chr3:49123303|49123582 hsa-miR-301a-3p 0 0 1
chr3:49123303|49123582 hsa-miR-130b-5p 0 0 1
chr3:49123303|49123582 hsa-miR-130b-3p 0 0 1
chr3:49123303|49123582 hsa-miR-302b-5p 0 0 1
chr3:49123303|49123582 hsa-miR-302b-3p 0 0 1
chr3:49123303|49123582 hsa-miR-302c-5p 0 0 1
chr3:49123303|49123582 hsa-miR-302c-3p 0 0 1
chr3:49123303|49123582 hsa-miR-302d-5p 0 0 1
chr3:49123303|49123582 hsa-miR-302d-3p 0 0 1
chr3:49123303|49123582 hsa-miR-372-5p 0 0 1
chr3:49123303|49123582 hsa-miR-372-3p 0 0 1
chr3:49123303|49123582 hsa-miR-373-5p 0 0 1
chr3:49123303|49123582 hsa-miR-373-3p 0 0 1
chr3:49123303|49123582 hsa-miR-202-5p 0 0 1
chr3:49123303|49123582 hsa-miR-202-3p 0 0 1
chr3:49123303|49123582 hsa-miR-520e-5p 0 0 1
chr3:49123303|49123582 hsa-miR-520e-3p 0 0 1
chr3:49123303|49123582 hsa-miR-520b-5p 0 0 1
chr3:49123303|49123582 hsa-miR-520b-3p 0 0 1
chr3:49123303|49123582 hsa-miR-504-5p 0 0 1
chr3:49123303|49123582 hsa-miR-504-3p 0 0 1
chr3:49123303|49123582 hsa-miR-558 0 1 1
chr3:49123303|49123582 hsa-miR-564 0 0 1
chr3:49123303|49123582 hsa-miR-573 0 0 1
chr3:49123303|49123582 hsa-miR-626 0 0 1
chr3:49123303|49123582 hsa-miR-1271-5p 0 0 1
chr3:49123303|49123582 hsa-miR-1271-3p 0 0 1
chr3:49123303|49123582 hsa-miR-454-5p 0 0 1
chr3:49123303|49123582 hsa-miR-454-3p 0 0 1
chr3:49123303|49123582 hsa-miR-892b 0 0 1
chr3:49123303|49123582 hsa-miR-301b-5p 0 0 1
chr3:49123303|49123582 hsa-miR-301b-3p 0 0 1
chr3:49123303|49123582 hsa-miR-1205 0 0 1
chr3:49123303|49123582 hsa-miR-1256 0 1 1
chr3:49123303|49123582 hsa-miR-302e 0 0 1
chr3:49123303|49123582 hsa-miR-1324 0 0 1
chr3:49123303|49123582 hsa-miR-1827 0 0 1
chr3:49123303|49123582 hsa-miR-1184 0 0 1
chr3:49123303|49123582 hsa-miR-1207-3p 0 0 1
chr3:49123303|49123582 hsa-miR-520d-3p 0 0 1
chr3:49123303|49123582 hsa-miR-519b-3p 0 0 1
chr3:49123303|49123582 hsa-miR-519c-3p 0 0 1
chr3:49123303|49123582 hsa-miR-520a-3p 0 0 1
chr3:49123303|49123582 hsa-miR-520c-3p 0 0 1
chr3:49123303|49123582 hsa-miR-138 0 0 1
chr3:49123303|49123582 hsa-let-7a 0 0 1
chr3:49123303|49123582 hsa-let-7f 0 0 1
chr3:49123303|49123582 hsa-miR-720 0 0 1
chr3:49123303|49123582 hsa-miR-519a 0 0 1
chr3:49123303|49123582 hsa-miR-3166 0 1 0
chr3:49123303|49123582 hsa-miR-3621 1 0 0
chr3:49123303|49123582 hsa-miR-3666 0 1 0
chr3:49123303|49123582 hsa-miR-4741 1 0 0
chr3:49123303|49123582 hsa-miR-8077 1 0 0
chr3:49123303|49123582 hsa-miR-105-3p 1 0 0
chr3:49123303|49123582 hsa-miR-500b-3p 0 1 0
chr3:49123303|49123582 hsa-miR-1247-3p 1 0 0
chr3:49123303|49123582 hsa-miR-4708-5p 1 0 0
chr3:49123303|49123582 hsa-miR-7160-5p 1 1 0
chr3:49123303|49123582 hsa-miR-4725-5p 0 1 0
chr3:49123303|49123582 hsa-miR-2467-3p 0 1 0
chr3:49123303|49123582 hsa-miR-1226-5p 1 0 0
chr3:49123303|49123582 hsa-miR-3944-3p 1 0 0
chr3:49123303|49123582 hsa-miR-5001-3p 0 1 0
chr3:49123303|49123582 hsa-miR-1228-5p 0 1 0
chr3:49123303|49123582 hsa-miR-4743-5p 1 0 0
chr3:49123303|49123582 hsa-miR-6886-5p 1 0 0
chr3:49123303|49123582 hsa-miR-4750-3p 0 1 0
chr3:49123303|49123582 hsa-miR-5189-5p 0 1 0
chr3:49123303|49123582 hsa-miR-6862-5p 1 1 0
chr3:49123303|49123582 hsa-miR-6735-5p 0 1 0
chr3:49123303|49123582 hsa-miR-10394-3p 1 0 0
chr3:49123303|49123582 hsa-miR-1910-3p 0 1 0
chr3:49123303|49123582 hsa-miR-6511a-5p 0 1 0
chr3:49123303|49123582 hsa-miR-6862-3p 0 1 0
chr3:49123303|49123582 hsa-miR-6764-5p 1 0 0
chr3:49123303|49123582 hsa-miR-664a-5p 0 1 0
chr3:49123303|49123582 hsa-miR-6855-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49123303|49123582
ORF Type ORF1
Protein Length 51
Nucleotide Length 156
Protein Sequence LTDVQDENFNANHALSGLERDRLALNLTLRQLDQHLDLLKHSNFLGELLAN
Nucleotide Sequence CTGACAGATGTGCAAGATGAGAACTTCAATGCCAACCATGCACTAAGTGGTCTGGAGCGAGATAGGCTTGCACTTAATCTCACACTGCGGCAGCTCGACCAGCATCTTGACTTGCTCAAACATTCAAACTTCCTGGGTGAGTTGTTAGCCAACTAG
CircID chr3:49123303|49123582
ORF Type ORF2
Protein Length 26
Nucleotide Length 81
Protein Sequence MHLISHCGSSTSILTCSNIQTSWVSC
Nucleotide Sequence TTGCACTTAATCTCACACTGCGGCAGCTCGACCAGCATCTTGACTTGCTCAAACATTCAAACTTCCTGGGTGAGTTGTTAG
CircID chr3:49123303|49123582
ORF Type ORF3
Protein Length 30
Nucleotide Length 90
Protein Sequence MPLPNLGAYDSIRHAHSQSAEAERRANTSA
Nucleotide Sequence CTGCCTCTGCCCAATTTAGGTGCCTATGACAGCATCCGGCATGCCCATAGCCAGTCTGCAGAGGCAGAACGTCGTGCCAATACCTCAGCC
CircID chr3:49123303|49123582
ORF Type ORF4
Protein Length 26
Nucleotide Length 81
Protein Sequence MFEQVKMLVELPQCEIKCKPISLQTT
Nucleotide Sequence ATGTTTGAGCAAGTCAAGATGCTGGTCGAGCTGCCGCAGTGTGAGATTAAGTGCAAGCCTATCTCGCTCCAGACCACTTAG
CircID chr3:49123303|49123582
ORF Type ORF5
Protein Length 41
Nucleotide Length 126
Protein Sequence LRYWHDVLPLQTGYGHAGCCHRHLNWAEADSQLKTDPGPPA
Nucleotide Sequence CTGAGGTATTGGCACGACGTTCTGCCTCTGCAGACTGGCTATGGGCATGCCGGATGCTGTCATAGGCACCTAAATTGGGCAGAGGCAGACAGTCAGCTGAAGACTGACCCTGGTCCACCTGCCTAG
CircID chr3:49123303|49123582
ORF Type ORF6
Protein Length 50
Nucleotide Length 150
Protein Sequence MANNSPRKFECLSKSRCWSSCRSVRLSASLSRSRPLSAWLALKFSSCTSV
Nucleotide Sequence TTGGCTAACAACTCACCCAGGAAGTTTGAATGTTTGAGCAAGTCAAGATGCTGGTCGAGCTGCCGCAGTGTGAGATTAAGTGCAAGCCTATCTCGCTCCAGACCACTTAGTGCATGGTTGGCATTGAAGTTCTCATCTTGCACATCTGTC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab