CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49128730|49129055
Strand +
CircType exon
Host Gene ENSG00000172037.12;
Algorism CIRI2;
Sequence CACCTAATTTGGGAGGCTGAGGACACCCGAGGGCAGGTGTGGGGCCTCCCCCTAAGCAGAGGGCTGGATGTGGGTGGACACGTCTATGACTGGAGAGGTGGGGTTATGGGCAGTACCTTGTTGAGGGGATAGGGGTGATATCTAGCTTTGGCAGGAGAAATGGGGTTTGGGGCTGGCTGTGGCAGAAGAGGCAAAGCCTCACCTGAGCCTCCATCCCTGGCTGCATTATCTCCCAGGTGCTCGATGTGGTGGAGCGCCTGGTGACCCCCGGGGAAACTCCATCCTGGACTGGCTCAGGCTTCGTGCGGCTACAGGAAGGTCAGACC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49128730|49129055 hsa-miR-150-5p 0 0 1
chr3:49128730|49129055 hsa-miR-150-3p 0 0 1
chr3:49128730|49129055 hsa-miR-376b-5p 0 0 1
chr3:49128730|49129055 hsa-miR-376b-3p 0 0 1
chr3:49128730|49129055 hsa-miR-575 0 0 1
chr3:49128730|49129055 hsa-miR-624-5p 0 0 1
chr3:49128730|49129055 hsa-miR-624-3p 0 0 1
chr3:49128730|49129055 hsa-miR-650 0 0 1
chr3:49128730|49129055 hsa-miR-766-5p 0 0 1
chr3:49128730|49129055 hsa-miR-766-3p 0 0 1
chr3:49128730|49129055 hsa-miR-665 0 0 1
chr3:49128730|49129055 hsa-miR-1226-5p 0 0 1
chr3:49128730|49129055 hsa-miR-1226-3p 0 0 1
chr3:49128730|49129055 hsa-miR-1228-5p 0 0 1
chr3:49128730|49129055 hsa-miR-1228-3p 0 0 1
chr3:49128730|49129055 hsa-miR-125a-3p 0 1 1
chr3:49128730|49129055 hsa-miR-486-5p 0 0 1
chr3:49128730|49129055 hsa-miR-485-5p 0 0 1
chr3:49128730|49129055 hsa-miR-1224-3p 0 1 1
chr3:49128730|49129055 hsa-miR-455-3p 0 0 1
chr3:49128730|49129055 hsa-miR-24 0 0 1
chr3:49128730|49129055 hsa-miR-376a 0 0 1
chr3:49128730|49129055 hsa-miR-346 0 1 0
chr3:49128730|49129055 hsa-miR-596 1 0 0
chr3:49128730|49129055 hsa-miR-614 1 0 0
chr3:49128730|49129055 hsa-miR-637 0 1 0
chr3:49128730|49129055 hsa-miR-661 1 0 0
chr3:49128730|49129055 hsa-miR-1200 1 0 0
chr3:49128730|49129055 hsa-miR-1248 0 1 0
chr3:49128730|49129055 hsa-miR-1913 1 0 0
chr3:49128730|49129055 hsa-miR-3137 0 1 0
chr3:49128730|49129055 hsa-miR-3188 0 1 0
chr3:49128730|49129055 hsa-miR-4323 0 1 0
chr3:49128730|49129055 hsa-miR-4292 1 0 0
chr3:49128730|49129055 hsa-miR-4443 0 1 0
chr3:49128730|49129055 hsa-miR-3135b 1 0 0
chr3:49128730|49129055 hsa-miR-4505 1 0 0
chr3:49128730|49129055 hsa-miR-5681b 1 0 0
chr3:49128730|49129055 hsa-miR-6078 1 0 0
chr3:49128730|49129055 hsa-miR-12115 1 0 0
chr3:49128730|49129055 hsa-miR-18a-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6879-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6765-5p 1 0 0
chr3:49128730|49129055 hsa-miR-6720-5p 0 1 0
chr3:49128730|49129055 hsa-miR-7851-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6089 1 0 0
chr3:49128730|49129055 hsa-miR-6807-5p 1 1 0
chr3:49128730|49129055 hsa-miR-3192-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6757-5p 0 1 0
chr3:49128730|49129055 hsa-miR-4722-5p 1 0 0
chr3:49128730|49129055 hsa-miR-874-5p 1 1 0
chr3:49128730|49129055 hsa-miR-3189-5p 1 1 0
chr3:49128730|49129055 hsa-miR-877-3p 0 1 0
chr3:49128730|49129055 hsa-miR-2467-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6782-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6774-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6858-3p 1 1 0
chr3:49128730|49129055 hsa-miR-615-3p 1 0 0
chr3:49128730|49129055 hsa-miR-939-3p 1 0 0
chr3:49128730|49129055 hsa-miR-7109-5p 1 0 0
chr3:49128730|49129055 hsa-miR-9-3p 0 1 0
chr3:49128730|49129055 hsa-miR-4786-3p 1 0 0
chr3:49128730|49129055 hsa-miR-7111-3p 1 0 0
chr3:49128730|49129055 hsa-miR-4787-5p 0 1 0
chr3:49128730|49129055 hsa-miR-4446-5p 1 0 0
chr3:49128730|49129055 hsa-miR-4733-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6785-3p 1 0 0
chr3:49128730|49129055 hsa-miR-4758-3p 1 1 0
chr3:49128730|49129055 hsa-miR-6746-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6738-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6802-3p 1 1 0
chr3:49128730|49129055 hsa-miR-6883-3p 1 0 0
chr3:49128730|49129055 hsa-miR-767-3p 1 1 0
chr3:49128730|49129055 hsa-miR-6779-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6800-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6732-3p 1 0 0
chr3:49128730|49129055 hsa-miR-4802-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6890-3p 0 1 0
chr3:49128730|49129055 hsa-miR-3162-3p 0 1 0
chr3:49128730|49129055 hsa-miR-18b-3p 0 1 0
chr3:49128730|49129055 hsa-miR-3152-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6780a-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6754-3p 1 0 0
chr3:49128730|49129055 hsa-miR-1199-5p 1 0 0
chr3:49128730|49129055 hsa-miR-2682-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6791-5p 0 1 0
chr3:49128730|49129055 hsa-miR-6784-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6862-3p 1 0 0
chr3:49128730|49129055 hsa-miR-10392-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6512-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6769b-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6817-5p 0 1 0
chr3:49128730|49129055 hsa-miR-1234-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6781-3p 0 1 0
chr3:49128730|49129055 hsa-miR-6797-3p 1 0 0
chr3:49128730|49129055 hsa-miR-6771-3p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49128730|49129055
ORF Type ORF1
Protein Length 38
Nucleotide Length 117
Protein Sequence MAGEMGFGAGCGRRGKASPEPPSLAALSPRCSMWWSAW
Nucleotide Sequence TTGGCAGGAGAAATGGGGTTTGGGGCTGGCTGTGGCAGAAGAGGCAAAGCCTCACCTGAGCCTCCATCCCTGGCTGCATTATCTCCCAGGTGCTCGATGTGGTGGAGCGCCTGGTGA
CircID chr3:49128730|49129055
ORF Type ORF2
Protein Length 53
Nucleotide Length 159
Protein Sequence MGLAVAEEAKPHLSLHPWLHYLPGARCGGAPGDPRGNSILDWLRLRAATGRSD
Nucleotide Sequence TTGGGGCTGGCTGTGGCAGAAGAGGCAAAGCCTCACCTGAGCCTCCATCCCTGGCTGCATTATCTCCCAGGTGCTCGATGTGGTGGAGCGCCTGGTGACCCCCGGGGAAACTCCATCCTGGACTGGCTCAGGCTTCGTGCGGCTACAGGAAGGTCAGAC
CircID chr3:49128730|49129055
ORF Type ORF3
Protein Length 38
Nucleotide Length 117
Protein Sequence MERWGYGQYLVEGIGVISSFGRRNGVWGWLWQKRQSLT
Nucleotide Sequence CTGGAGAGGTGGGGTTATGGGCAGTACCTTGTTGAGGGGATAGGGGTGATATCTAGCTTTGGCAGGAGAAATGGGGTTTGGGGCTGGCTGTGGCAGAAGAGGCAAAGCCTCACCTGA
CircID chr3:49128730|49129055
ORF Type ORF4
Protein Length 50
Nucleotide Length 153
Protein Sequence MGDNAARDGGSGEALPLLPQPAPNPISPAKARYHPYPLNKVLPITPPLQS
Nucleotide Sequence CTGGGAGATAATGCAGCCAGGGATGGAGGCTCAGGTGAGGCTTTGCCTCTTCTGCCACAGCCAGCCCCAAACCCCATTTCTCCTGCCAAAGCTAGATATCACCCCTATCCCCTCAACAAGGTACTGCCCATAACCCCACCTCTCCAGTCATAG
CircID chr3:49128730|49129055
ORF Type ORF5
Protein Length 40
Nucleotide Length 123
Protein Sequence MQPGMEAQVRLCLFCHSQPQTPFLLPKLDITPIPSTRYCP
Nucleotide Sequence ATGCAGCCAGGGATGGAGGCTCAGGTGAGGCTTTGCCTCTTCTGCCACAGCCAGCCCCAAACCCCATTTCTCCTGCCAAAGCTAGATATCACCCCTATCCCCTCAACAAGGTACTGCCCATAA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab