CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49132616|49132868
Strand -
CircType exon
Host Gene ENSG00000172037.12;
Algorism CIRI2;
Sequence AGCCAGGCACATCCGGGGCAGGGGCCTGTGCCAGTGTGGCAGCCAGCACTGGGGACAGTAGCTCAGTCAGTTCCGCTGAGTTCCTATCCAGTGGCTCCACCTCATGTGCCCCAAGGGCAACTACCAGGACCTACCATCACATTCCACAACCCCCAGCCCCCACCAGGCCCTCTCACCGCTTAGCAGTAGGCCCAGTCGAAGTTCCCAGGGCAGAGGCTGTCCCCTCCCTCTTTCCCTTGAGGTCAGCTCCATC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49132616|49132868 hsa-miR-206 0 0 1
chr3:49132616|49132868 hsa-miR-583 0 0 1
chr3:49132616|49132868 hsa-miR-604 0 0 1
chr3:49132616|49132868 hsa-miR-610 0 0 1
chr3:49132616|49132868 hsa-miR-613 0 0 1
chr3:49132616|49132868 hsa-miR-637 1 1 1
chr3:49132616|49132868 hsa-miR-647 0 1 1
chr3:49132616|49132868 hsa-miR-661 0 0 1
chr3:49132616|49132868 hsa-miR-874-5p 0 0 1
chr3:49132616|49132868 hsa-miR-874-3p 0 0 1
chr3:49132616|49132868 hsa-miR-541-5p 0 0 1
chr3:49132616|49132868 hsa-miR-541-3p 0 0 1
chr3:49132616|49132868 hsa-miR-938 0 0 1
chr3:49132616|49132868 hsa-miR-1243 0 0 1
chr3:49132616|49132868 hsa-miR-1292-5p 0 0 1
chr3:49132616|49132868 hsa-miR-1292-3p 0 0 1
chr3:49132616|49132868 hsa-miR-1321 0 0 1
chr3:49132616|49132868 hsa-miR-1825 0 0 1
chr3:49132616|49132868 hsa-miR-512-5p 0 0 1
chr3:49132616|49132868 hsa-miR-512-3p 0 0 1
chr3:49132616|49132868 hsa-miR-486-3p 0 0 1
chr3:49132616|49132868 hsa-miR-146b-3p 0 0 1
chr3:49132616|49132868 hsa-miR-654-5p 0 0 1
chr3:49132616|49132868 hsa-miR-455-5p 0 0 1
chr3:49132616|49132868 hsa-miR-324-3p 1 0 1
chr3:49132616|49132868 hsa-miR-550 0 0 1
chr3:49132616|49132868 hsa-miR-1 0 0 1
chr3:49132616|49132868 hsa-miR-1254 0 0 1
chr3:49132616|49132868 hsa-miR-923 0 0 1
chr3:49132616|49132868 hsa-miR-608 1 0 0
chr3:49132616|49132868 hsa-miR-612 1 0 0
chr3:49132616|49132868 hsa-miR-762 1 1 0
chr3:49132616|49132868 hsa-miR-1182 1 0 0
chr3:49132616|49132868 hsa-miR-1268a 1 0 0
chr3:49132616|49132868 hsa-miR-2861 1 1 0
chr3:49132616|49132868 hsa-miR-3139 0 1 0
chr3:49132616|49132868 hsa-miR-3153 0 1 0
chr3:49132616|49132868 hsa-miR-3155a 1 0 0
chr3:49132616|49132868 hsa-miR-3181 1 0 0
chr3:49132616|49132868 hsa-miR-4260 0 1 0
chr3:49132616|49132868 hsa-miR-4278 1 0 0
chr3:49132616|49132868 hsa-miR-3652 1 0 0
chr3:49132616|49132868 hsa-miR-1268b 1 0 0
chr3:49132616|49132868 hsa-miR-4447 1 1 0
chr3:49132616|49132868 hsa-miR-4463 1 0 0
chr3:49132616|49132868 hsa-miR-4466 1 0 0
chr3:49132616|49132868 hsa-miR-4471 0 1 0
chr3:49132616|49132868 hsa-miR-4481 1 0 0
chr3:49132616|49132868 hsa-miR-4488 1 0 0
chr3:49132616|49132868 hsa-miR-4492 1 0 0
chr3:49132616|49132868 hsa-miR-4498 1 0 0
chr3:49132616|49132868 hsa-miR-4505 1 0 0
chr3:49132616|49132868 hsa-miR-4507 1 0 0
chr3:49132616|49132868 hsa-miR-4508 1 0 0
chr3:49132616|49132868 hsa-miR-4525 1 0 0
chr3:49132616|49132868 hsa-miR-1587 1 0 0
chr3:49132616|49132868 hsa-miR-4644 0 1 0
chr3:49132616|49132868 hsa-miR-4651 1 0 0
chr3:49132616|49132868 hsa-miR-4654 1 0 0
chr3:49132616|49132868 hsa-miR-4656 1 0 0
chr3:49132616|49132868 hsa-miR-4657 1 0 0
chr3:49132616|49132868 hsa-miR-4688 1 0 0
chr3:49132616|49132868 hsa-miR-4706 1 0 0
chr3:49132616|49132868 hsa-miR-4710 1 0 0
chr3:49132616|49132868 hsa-miR-4721 1 0 0
chr3:49132616|49132868 hsa-miR-4739 1 0 0
chr3:49132616|49132868 hsa-miR-4741 1 0 0
chr3:49132616|49132868 hsa-miR-5191 0 1 0
chr3:49132616|49132868 hsa-miR-5194 1 0 0
chr3:49132616|49132868 hsa-miR-5787 1 1 0
chr3:49132616|49132868 hsa-miR-6069 1 0 0
chr3:49132616|49132868 hsa-miR-6085 1 0 0
chr3:49132616|49132868 hsa-miR-6090 1 0 0
chr3:49132616|49132868 hsa-miR-6127 0 1 0
chr3:49132616|49132868 hsa-miR-6130 0 1 0
chr3:49132616|49132868 hsa-miR-6133 0 1 0
chr3:49132616|49132868 hsa-miR-6860 1 0 0
chr3:49132616|49132868 hsa-miR-7704 1 0 0
chr3:49132616|49132868 hsa-miR-7974 1 0 0
chr3:49132616|49132868 hsa-miR-8082 0 1 0
chr3:49132616|49132868 hsa-miR-8089 1 0 0
chr3:49132616|49132868 hsa-miR-370-3p 1 0 0
chr3:49132616|49132868 hsa-miR-18a-3p 0 1 0
chr3:49132616|49132868 hsa-miR-92a-1-5p 1 0 0
chr3:49132616|49132868 hsa-miR-92a-2-5p 1 0 0
chr3:49132616|49132868 hsa-miR-4731-5p 1 0 0
chr3:49132616|49132868 hsa-miR-7155-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6747-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6765-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6857-5p 1 0 0
chr3:49132616|49132868 hsa-miR-210-5p 0 1 0
chr3:49132616|49132868 hsa-miR-27a-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6728-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6833-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6880-5p 1 1 0
chr3:49132616|49132868 hsa-miR-3064-5p 0 1 0
chr3:49132616|49132868 hsa-miR-6730-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6741-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6727-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6721-5p 1 0 0
chr3:49132616|49132868 hsa-miR-1915-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6742-5p 1 0 0
chr3:49132616|49132868 hsa-miR-3151-5p 1 0 0
chr3:49132616|49132868 hsa-miR-185-3p 1 0 0
chr3:49132616|49132868 hsa-miR-6829-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6805-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6782-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6514-5p 0 1 0
chr3:49132616|49132868 hsa-miR-5008-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6786-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6835-5p 1 0 0
chr3:49132616|49132868 hsa-miR-939-3p 1 0 0
chr3:49132616|49132868 hsa-miR-7109-5p 1 0 0
chr3:49132616|49132868 hsa-miR-3944-3p 1 0 0
chr3:49132616|49132868 hsa-miR-4640-5p 1 0 0
chr3:49132616|49132868 hsa-miR-296-3p 1 0 0
chr3:49132616|49132868 hsa-miR-6749-5p 1 1 0
chr3:49132616|49132868 hsa-miR-4446-3p 1 0 0
chr3:49132616|49132868 hsa-miR-149-3p 1 1 0
chr3:49132616|49132868 hsa-miR-3189-3p 0 1 0
chr3:49132616|49132868 hsa-miR-4746-3p 1 0 0
chr3:49132616|49132868 hsa-miR-6752-3p 0 1 0
chr3:49132616|49132868 hsa-miR-6857-3p 0 1 0
chr3:49132616|49132868 hsa-miR-4639-5p 0 1 0
chr3:49132616|49132868 hsa-let-7g-3p 1 0 0
chr3:49132616|49132868 hsa-miR-1233-5p 1 0 0
chr3:49132616|49132868 hsa-miR-4763-3p 1 0 0
chr3:49132616|49132868 hsa-miR-6769b-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6778-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6787-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6812-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6816-5p 1 0 0
chr3:49132616|49132868 hsa-miR-5001-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6726-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6737-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6752-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6756-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6769a-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6803-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6813-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6819-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6851-5p 1 0 0
chr3:49132616|49132868 hsa-miR-7107-5p 1 0 0
chr3:49132616|49132868 hsa-miR-7110-5p 1 0 0
chr3:49132616|49132868 hsa-miR-1249-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6751-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6779-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6780a-5p 1 0 0
chr3:49132616|49132868 hsa-miR-7111-5p 1 0 0
chr3:49132616|49132868 hsa-miR-3620-5p 1 0 0
chr3:49132616|49132868 hsa-miR-4728-5p 0 1 0
chr3:49132616|49132868 hsa-miR-5196-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6836-5p 1 0 0
chr3:49132616|49132868 hsa-miR-10392-5p 1 0 0
chr3:49132616|49132868 hsa-miR-1237-5p 1 0 0
chr3:49132616|49132868 hsa-miR-328-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6794-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6846-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6848-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6858-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6883-5p 1 1 0
chr3:49132616|49132868 hsa-miR-3187-5p 1 0 0
chr3:49132616|49132868 hsa-miR-4697-5p 1 0 0
chr3:49132616|49132868 hsa-miR-939-5p 1 0 0
chr3:49132616|49132868 hsa-miR-4758-5p 1 0 0
chr3:49132616|49132868 hsa-miR-4769-5p 1 0 0
chr3:49132616|49132868 hsa-miR-365b-5p 1 0 0
chr3:49132616|49132868 hsa-miR-10396a-3p 1 0 0
chr3:49132616|49132868 hsa-miR-3940-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6731-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6739-5p 0 1 0
chr3:49132616|49132868 hsa-miR-6758-5p 1 0 0
chr3:49132616|49132868 hsa-miR-1271-3p 1 0 0
chr3:49132616|49132868 hsa-miR-6855-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6877-3p 1 1 0
chr3:49132616|49132868 hsa-miR-4472 1 0 0
chr3:49132616|49132868 hsa-miR-6750-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6785-5p 1 1 0
chr3:49132616|49132868 hsa-miR-6724-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6791-5p 1 0 0
chr3:49132616|49132868 hsa-miR-769-3p 1 0 0
chr3:49132616|49132868 hsa-miR-6810-3p 0 1 0
chr3:49132616|49132868 hsa-miR-6718-5p 1 0 0
chr3:49132616|49132868 hsa-miR-6819-3p 0 1 0
chr3:49132616|49132868 hsa-miR-3085-3p 0 1 0
chr3:49132616|49132868 hsa-miR-4756-5p 0 1 0
chr3:49132616|49132868 hsa-miR-3064-3p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49132616|49132868
ORF Type ORF1
Protein Length 44
Nucleotide Length 135
Protein Sequence MGTVAQSVPLSSYPVAPPHVPQGQLPGPTITFHNPQPPPGPLTA
Nucleotide Sequence CTGGGGACAGTAGCTCAGTCAGTTCCGCTGAGTTCCTATCCAGTGGCTCCACCTCATGTGCCCCAAGGGCAACTACCAGGACCTACCATCACATTCCACAACCCCCAGCCCCCACCAGGCCCTCTCACCGCTTAG
CircID chr3:49132616|49132868
ORF Type ORF2
Protein Length 50
Nucleotide Length 150
Protein Sequence MCPKGNYQDLPSHSTTPSPHQALSPLSSRPSRSSQGRGCPLPLSLEVSSI
Nucleotide Sequence ATGTGCCCCAAGGGCAACTACCAGGACCTACCATCACATTCCACAACCCCCAGCCCCCACCAGGCCCTCTCACCGCTTAGCAGTAGGCCCAGTCGAAGTTCCCAGGGCAGAGGCTGTCCCCTCCCTCTTTCCCTTGAGGTCAGCTCCATC
CircID chr3:49132616|49132868
ORF Type ORF3
Protein Length 42
Nucleotide Length 126
Protein Sequence MVVALGAHEVEPLDRNSAELTELLSPVLAATLAQAPAPDVPG
Nucleotide Sequence CTGGTAGTTGCCCTTGGGGCACATGAGGTGGAGCCACTGGATAGGAACTCAGCGGAACTGACTGAGCTACTGTCCCCAGTGCTGGCTGCCACACTGGCACAGGCCCCTGCCCCGGATGTGCCTGGC
CircID chr3:49132616|49132868
ORF Type ORF4
Protein Length 43
Nucleotide Length 132
Protein Sequence MELTSRERGRGQPLPWELRLGLLLSGERAWWGLGVVECDGRSW
Nucleotide Sequence ATGGAGCTGACCTCAAGGGAAAGAGGGAGGGGACAGCCTCTGCCCTGGGAACTTCGACTGGGCCTACTGCTAAGCGGTGAGAGGGCCTGGTGGGGGCTGGGGGTTGTGGAATGTGATGGTAGGTCCTGGTAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab