CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49132618|49132856
Strand +
CircType exon
Host Gene ENSG00000172037.12;
Algorism CIRI2;
Sequence CTCAAGGGAAAGAGGGAGGGGACAGCCTCTGCCCTGGGAACTTCGACTGGGCCTACTGCTAAGCGGTGAGAGGGCCTGGTGGGGGCTGGGGGTTGTGGAATGTGATGGTAGGTCCTGGTAGTTGCCCTTGGGGCACATGAGGTGGAGCCACTGGATAGGAACTCAGCGGAACTGACTGAGCTACTGTCCCCAGTGCTGGCTGCCACACTGGCACAGGCCCCTGCCCCGGATGTGCCTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49132618|49132856 hsa-miR-23a-5p 0 0 1
chr3:49132618|49132856 hsa-miR-23a-3p 0 0 1
chr3:49132618|49132856 hsa-miR-204-5p 0 0 1
chr3:49132618|49132856 hsa-miR-204-3p 0 0 1
chr3:49132618|49132856 hsa-miR-211-5p 0 0 1
chr3:49132618|49132856 hsa-miR-211-3p 0 0 1
chr3:49132618|49132856 hsa-miR-223-5p 0 0 1
chr3:49132618|49132856 hsa-miR-223-3p 0 0 1
chr3:49132618|49132856 hsa-miR-23b-5p 0 0 1
chr3:49132618|49132856 hsa-miR-23b-3p 0 0 1
chr3:49132618|49132856 hsa-miR-572 0 0 1
chr3:49132618|49132856 hsa-miR-623 0 0 1
chr3:49132618|49132856 hsa-miR-1227-5p 0 0 1
chr3:49132618|49132856 hsa-miR-1227-3p 0 0 1
chr3:49132618|49132856 hsa-miR-1229-5p 0 0 1
chr3:49132618|49132856 hsa-miR-1229-3p 0 0 1
chr3:49132618|49132856 hsa-miR-1825 0 0 1
chr3:49132618|49132856 hsa-miR-486-3p 0 1 1
chr3:49132618|49132856 hsa-miR-885-3p 0 0 1
chr3:49132618|49132856 hsa-miR-485-5p 0 0 1
chr3:49132618|49132856 hsa-miR-199a-5p 0 1 1
chr3:49132618|49132856 hsa-miR-361-3p 0 0 1
chr3:49132618|49132856 hsa-miR-455-5p 0 0 1
chr3:49132618|49132856 hsa-miR-199b-5p 0 0 1
chr3:49132618|49132856 hsa-miR-337-3p 0 0 1
chr3:49132618|49132856 hsa-miR-1207-5p 0 1 1
chr3:49132618|49132856 hsa-miR-642 0 0 1
chr3:49132618|49132856 hsa-miR-644 0 0 1
chr3:49132618|49132856 hsa-miR-665 1 0 0
chr3:49132618|49132856 hsa-miR-2861 0 1 0
chr3:49132618|49132856 hsa-miR-4302 0 1 0
chr3:49132618|49132856 hsa-miR-3943 1 1 0
chr3:49132618|49132856 hsa-miR-3972 1 0 0
chr3:49132618|49132856 hsa-miR-4673 0 1 0
chr3:49132618|49132856 hsa-miR-4682 0 1 0
chr3:49132618|49132856 hsa-miR-4688 1 1 0
chr3:49132618|49132856 hsa-miR-5693 0 1 0
chr3:49132618|49132856 hsa-miR-8089 0 1 0
chr3:49132618|49132856 hsa-miR-9898 1 0 0
chr3:49132618|49132856 hsa-miR-12125 0 1 0
chr3:49132618|49132856 hsa-miR-140-5p 0 1 0
chr3:49132618|49132856 hsa-miR-222-5p 0 1 0
chr3:49132618|49132856 hsa-miR-6720-5p 1 0 0
chr3:49132618|49132856 hsa-miR-766-3p 1 0 0
chr3:49132618|49132856 hsa-miR-6892-3p 1 1 0
chr3:49132618|49132856 hsa-miR-6854-5p 0 1 0
chr3:49132618|49132856 hsa-miR-6727-5p 1 1 0
chr3:49132618|49132856 hsa-miR-6721-5p 0 1 0
chr3:49132618|49132856 hsa-miR-3189-5p 1 0 0
chr3:49132618|49132856 hsa-miR-6832-3p 0 1 0
chr3:49132618|49132856 hsa-miR-6845-3p 1 0 0
chr3:49132618|49132856 hsa-miR-185-3p 1 0 0
chr3:49132618|49132856 hsa-miR-6810-5p 0 1 0
chr3:49132618|49132856 hsa-miR-6884-3p 1 1 0
chr3:49132618|49132856 hsa-miR-939-3p 1 0 0
chr3:49132618|49132856 hsa-miR-1228-5p 1 0 0
chr3:49132618|49132856 hsa-miR-4667-3p 0 1 0
chr3:49132618|49132856 hsa-miR-4733-3p 0 1 0
chr3:49132618|49132856 hsa-miR-4640-3p 1 0 0
chr3:49132618|49132856 hsa-miR-339-5p 1 0 0
chr3:49132618|49132856 hsa-miR-4646-3p 1 1 0
chr3:49132618|49132856 hsa-miR-6811-3p 0 1 0
chr3:49132618|49132856 hsa-miR-6867-3p 0 1 0
chr3:49132618|49132856 hsa-miR-6887-3p 0 1 0
chr3:49132618|49132856 hsa-miR-7112-3p 1 0 0
chr3:49132618|49132856 hsa-miR-6752-3p 1 0 0
chr3:49132618|49132856 hsa-miR-6814-5p 0 1 0
chr3:49132618|49132856 hsa-miR-6826-3p 1 1 0
chr3:49132618|49132856 hsa-miR-130b-5p 0 1 0
chr3:49132618|49132856 hsa-miR-4645-3p 0 1 0
chr3:49132618|49132856 hsa-miR-6729-3p 1 0 0
chr3:49132618|49132856 hsa-miR-4763-3p 1 1 0
chr3:49132618|49132856 hsa-miR-6775-5p 0 1 0
chr3:49132618|49132856 hsa-miR-6743-5p 1 0 0
chr3:49132618|49132856 hsa-miR-6722-3p 0 1 0
chr3:49132618|49132856 hsa-miR-1915-3p 0 1 0
chr3:49132618|49132856 hsa-miR-6836-5p 1 0 0
chr3:49132618|49132856 hsa-miR-1909-3p 0 1 0
chr3:49132618|49132856 hsa-miR-4745-3p 0 1 0
chr3:49132618|49132856 hsa-miR-6735-5p 0 1 0
chr3:49132618|49132856 hsa-miR-3085-5p 0 1 0
chr3:49132618|49132856 hsa-miR-7843-5p 0 1 0
chr3:49132618|49132856 hsa-miR-4700-5p 0 1 0
chr3:49132618|49132856 hsa-miR-4667-5p 0 1 0
chr3:49132618|49132856 hsa-miR-4722-3p 1 0 0
chr3:49132618|49132856 hsa-miR-6801-3p 1 0 0
chr3:49132618|49132856 hsa-miR-10392-3p 1 0 0
chr3:49132618|49132856 hsa-miR-4676-5p 0 1 0
chr3:49132618|49132856 hsa-miR-6876-3p 0 1 0
chr3:49132618|49132856 hsa-miR-4769-3p 1 0 0
chr3:49132618|49132856 hsa-miR-6715b-5p 1 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49132618|49132856
ORF Type ORF1
Protein Length 41
Nucleotide Length 123
Protein Sequence MVVALGAHEVEPLDRNSAELTELLSPVLAATLAQAPAPDVP
Nucleotide Sequence CTGGTAGTTGCCCTTGGGGCACATGAGGTGGAGCCACTGGATAGGAACTCAGCGGAACTGACTGAGCTACTGTCCCCAGTGCTGGCTGCCACACTGGCACAGGCCCCTGCCCCGGATGTGCCT
CircID chr3:49132618|49132856
ORF Type ORF2
Protein Length 30
Nucleotide Length 93
Protein Sequence MPWELRLGLLLSGERAWWGLGVVECDGRSW
Nucleotide Sequence CTGCCCTGGGAACTTCGACTGGGCCTACTGCTAAGCGGTGAGAGGGCCTGGTGGGGGCTGGGGGTTGTGGAATGTGATGGTAGGTCCTGGTAG
CircID chr3:49132618|49132856
ORF Type ORF3
Protein Length 44
Nucleotide Length 135
Protein Sequence MGTVAQSVPLSSYPVAPPHVPQGQLPGPTITFHNPQPPPGPLTA
Nucleotide Sequence CTGGGGACAGTAGCTCAGTCAGTTCCGCTGAGTTCCTATCCAGTGGCTCCACCTCATGTGCCCCAAGGGCAACTACCAGGACCTACCATCACATTCCACAACCCCCAGCCCCCACCAGGCCCTCTCACCGCTTAG
CircID chr3:49132618|49132856
ORF Type ORF4
Protein Length 46
Nucleotide Length 138
Protein Sequence MCPKGNYQDLPSHSTTPSPHQALSPLSSRPSRSSQGRGCPLPLSLE
Nucleotide Sequence ATGTGCCCCAAGGGCAACTACCAGGACCTACCATCACATTCCACAACCCCCAGCCCCCACCAGGCCCTCTCACCGCTTAGCAGTAGGCCCAGTCGAAGTTCCCAGGGCAGAGGCTGTCCCCTCCCTCTTTCCCTTGAG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab