CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49277168|49277433
Strand +
CircType exon
Host Gene ENSG00000188315.6;
Algorism CIRI2;
Sequence CCAGATGCTTTCTAGAACGGGTTCTTTCCTCATCCCTGCCAAGACTCTTCCCGGGGCCCCCATTCGAAAGCCCCGTCCCCACTCCCACCGCGGGGCCAGCCGCTGCGTGTGGGCAAGGCCTTAAGGAACCGGACGTATGGGTCCGGGATTTTTTGTCTGACCTTCAACCTAATCCGTGGGGGTTTGGGGCCTGCGCGGGGCACGCGCATGCGATGACCGTTGGATGGGTCGGCGTCACTGCGCTGCGGGTGAGGACAAGGACGTGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49277168|49277433 hsa-miR-493-5p 0 0 1
chr3:49277168|49277433 hsa-miR-493-3p 0 0 1
chr3:49277168|49277433 hsa-miR-551a 0 0 1
chr3:49277168|49277433 hsa-miR-551b-5p 0 0 1
chr3:49277168|49277433 hsa-miR-551b-3p 0 0 1
chr3:49277168|49277433 hsa-miR-605-5p 0 0 1
chr3:49277168|49277433 hsa-miR-605-3p 0 0 1
chr3:49277168|49277433 hsa-miR-924 0 0 1
chr3:49277168|49277433 hsa-miR-1255a 0 1 1
chr3:49277168|49277433 hsa-miR-1324 0 0 1
chr3:49277168|49277433 hsa-miR-296-5p 0 0 1
chr3:49277168|49277433 hsa-miR-491-5p 0 0 1
chr3:49277168|49277433 hsa-miR-671-3p 0 1 1
chr3:49277168|49277433 hsa-miR-1207-5p 1 1 1
chr3:49277168|49277433 hsa-miR-518d-5p 0 0 1
chr3:49277168|49277433 hsa-miR-519b-5p 0 0 1
chr3:49277168|49277433 hsa-miR-519c-5p 0 0 1
chr3:49277168|49277433 hsa-miR-520c-5p 0 0 1
chr3:49277168|49277433 hsa-miR-548b-3p 0 0 1
chr3:49277168|49277433 hsa-miR-548c-3p 0 0 1
chr3:49277168|49277433 hsa-miR-1255b 0 0 1
chr3:49277168|49277433 hsa-miR-526a 0 0 1
chr3:49277168|49277433 hsa-miR-612 1 0 0
chr3:49277168|49277433 hsa-miR-637 1 0 0
chr3:49277168|49277433 hsa-miR-663a 1 0 0
chr3:49277168|49277433 hsa-miR-762 1 0 0
chr3:49277168|49277433 hsa-miR-765 1 0 0
chr3:49277168|49277433 hsa-miR-1182 1 1 0
chr3:49277168|49277433 hsa-miR-1268a 1 0 0
chr3:49277168|49277433 hsa-miR-1539 1 0 0
chr3:49277168|49277433 hsa-miR-3175 1 0 0
chr3:49277168|49277433 hsa-miR-3196 1 0 0
chr3:49277168|49277433 hsa-miR-4294 1 0 0
chr3:49277168|49277433 hsa-miR-4270 1 0 0
chr3:49277168|49277433 hsa-miR-4271 1 0 0
chr3:49277168|49277433 hsa-miR-4281 1 1 0
chr3:49277168|49277433 hsa-miR-1268b 1 0 0
chr3:49277168|49277433 hsa-miR-4488 1 0 0
chr3:49277168|49277433 hsa-miR-3960 1 0 0
chr3:49277168|49277433 hsa-miR-4656 1 0 0
chr3:49277168|49277433 hsa-miR-4706 1 0 0
chr3:49277168|49277433 hsa-miR-4739 1 0 0
chr3:49277168|49277433 hsa-miR-6127 1 0 0
chr3:49277168|49277433 hsa-miR-6132 1 0 0
chr3:49277168|49277433 hsa-miR-6860 1 0 0
chr3:49277168|49277433 hsa-miR-7150 1 1 0
chr3:49277168|49277433 hsa-miR-8078 1 0 0
chr3:49277168|49277433 hsa-miR-8089 1 0 0
chr3:49277168|49277433 hsa-miR-4433b-3p 1 0 0
chr3:49277168|49277433 hsa-miR-1247-3p 0 1 0
chr3:49277168|49277433 hsa-miR-4665-3p 1 0 0
chr3:49277168|49277433 hsa-miR-6747-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4433a-3p 1 0 0
chr3:49277168|49277433 hsa-miR-7106-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6857-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4687-3p 1 0 0
chr3:49277168|49277433 hsa-miR-6799-5p 1 0 0
chr3:49277168|49277433 hsa-miR-5187-5p 1 1 0
chr3:49277168|49277433 hsa-miR-6757-5p 1 1 0
chr3:49277168|49277433 hsa-miR-874-5p 0 1 0
chr3:49277168|49277433 hsa-miR-6806-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6721-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4655-5p 1 0 0
chr3:49277168|49277433 hsa-miR-197-5p 1 0 0
chr3:49277168|49277433 hsa-miR-3189-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6716-5p 1 0 0
chr3:49277168|49277433 hsa-miR-3180-3p 1 1 0
chr3:49277168|49277433 hsa-miR-6782-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6810-5p 1 1 0
chr3:49277168|49277433 hsa-miR-615-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6786-5p 1 1 0
chr3:49277168|49277433 hsa-miR-1229-5p 1 0 0
chr3:49277168|49277433 hsa-miR-1908-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4787-5p 1 0 0
chr3:49277168|49277433 hsa-miR-149-3p 1 0 0
chr3:49277168|49277433 hsa-miR-193a-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6789-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4640-3p 1 0 0
chr3:49277168|49277433 hsa-miR-6825-3p 1 0 0
chr3:49277168|49277433 hsa-miR-3191-3p 1 1 0
chr3:49277168|49277433 hsa-miR-1225-5p 1 0 0
chr3:49277168|49277433 hsa-miR-188-3p 0 1 0
chr3:49277168|49277433 hsa-miR-5587-3p 0 1 0
chr3:49277168|49277433 hsa-miR-5007-5p 0 1 0
chr3:49277168|49277433 hsa-miR-10400-5p 1 0 0
chr3:49277168|49277433 hsa-miR-1233-5p 0 1 0
chr3:49277168|49277433 hsa-miR-4763-3p 1 0 0
chr3:49277168|49277433 hsa-miR-6787-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6812-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6816-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6775-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6737-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6752-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6756-5p 1 1 0
chr3:49277168|49277433 hsa-miR-6769a-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6803-5p 1 1 0
chr3:49277168|49277433 hsa-miR-6722-3p 1 0 0
chr3:49277168|49277433 hsa-miR-6808-5p 1 0 0
chr3:49277168|49277433 hsa-miR-5196-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6780b-5p 1 1 0
chr3:49277168|49277433 hsa-miR-10396b-5p 1 0 0
chr3:49277168|49277433 hsa-miR-1237-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4745-5p 1 1 0
chr3:49277168|49277433 hsa-miR-4749-5p 1 0 0
chr3:49277168|49277433 hsa-miR-675-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6777-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6846-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6848-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6889-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4758-5p 1 0 0
chr3:49277168|49277433 hsa-miR-3940-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6731-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6736-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4646-5p 1 0 0
chr3:49277168|49277433 hsa-miR-4747-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6724-5p 1 1 0
chr3:49277168|49277433 hsa-miR-6791-5p 1 0 0
chr3:49277168|49277433 hsa-miR-6862-3p 0 1 0
chr3:49277168|49277433 hsa-miR-10400-3p 1 0 0
chr3:49277168|49277433 hsa-miR-1255b-5p 0 1 0
chr3:49277168|49277433 hsa-miR-1912-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr3:49277168|49277433
ORF Type ORF1
Protein Length 37
Nucleotide Length 114
Protein Sequence MRVGKALRNRTYGSGIFCLTFNLIRGGLGPARGTRMR
Nucleotide Sequence CTGCGTGTGGGCAAGGCCTTAAGGAACCGGACGTATGGGTCCGGGATTTTTTGTCTGACCTTCAACCTAATCCGTGGGGGTTTGGGGCCTGCGCGGGGCACGCGCATGCGATGA

CircID chr3:49277168|49277433
ORF Type ORF2
Protein Length 39
Nucleotide Length 120
Protein Sequence MLSRTGSFLIPAKTLPGAPIRKPRPHSHRGASRCVWARP
Nucleotide Sequence ATGCTTTCTAGAACGGGTTCTTTCCTCATCCCTGCCAAGACTCTTCCCGGGGCCCCCATTCGAAAGCCCCGTCCCCACTCCCACCGCGGGGCCAGCCGCTGCGTGTGGGCAAGGCCTTAA

CircID chr3:49277168|49277433
ORF Type ORF3
Protein Length 25
Nucleotide Length 75
Protein Sequence MRGARACDDRWMGRRHCAAGEDKDV
Nucleotide Sequence CTGCGCGGGGCACGCGCATGCGATGACCGTTGGATGGGTCGGCGTCACTGCGCTGCGGGTGAGGACAAGGACGTG

CircID chr3:49277168|49277433
ORF Type ORF4
Protein Length 77
Nucleotide Length 231
Protein Sequence MPRLFPGPPFESPVPTPTAGPAAACGQGLKEPDVWVRDFLSDLQPNPWGFGACAGHAHAMTVGWVGVTALRVRTRTW
Nucleotide Sequence CTGCCAAGACTCTTCCCGGGGCCCCCATTCGAAAGCCCCGTCCCCACTCCCACCGCGGGGCCAGCCGCTGCGTGTGGGCAAGGCCTTAAGGAACCGGACGTATGGGTCCGGGATTTTTTGTCTGACCTTCAACCTAATCCGTGGGGGTTTGGGGCCTGCGCGGGGCACGCGCATGCGATGACCGTTGGATGGGTCGGCGTCACTGCGCTGCGGGTGAGGACAAGGACGTGG

CircID chr3:49277168|49277433
ORF Type ORF5
Protein Length 59
Nucleotide Length 180
Protein Sequence MRVPRAGPKPPRIRLKVRQKIPDPYVRFLKALPTRSGWPRGGSGDGAFEWGPREESWQG
Nucleotide Sequence ATGCGCGTGCCCCGCGCAGGCCCCAAACCCCCACGGATTAGGTTGAAGGTCAGACAAAAAATCCCGGACCCATACGTCCGGTTCCTTAAGGCCTTGCCCACACGCAGCGGCTGGCCCCGCGGTGGGAGTGGGGACGGGGCTTTCGAATGGGGGCCCCGGGAAGAGTCTTGGCAGGGATGA

CircID chr3:49277168|49277433
ORF Type ORF6
Protein Length 33
Nucleotide Length 99
Protein Sequence MAPRWEWGRGFRMGAPGRVLAGMRKEPVLESIW
Nucleotide Sequence CTGGCCCCGCGGTGGGAGTGGGGACGGGGCTTTCGAATGGGGGCCCCGGGAAGAGTCTTGGCAGGGATGAGGAAAGAACCCGTTCTAGAAAGCATCTGG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites