CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49702115|49702405
Strand +
CircType exon
Host Gene ENSG00000164068.14;
Algorism CIRI2;
Sequence CCCCCGGCCACTGGCGTTCTCCTGCAGAAACTTGCGAAACTTGGTCAGGAAGATATACCTAGAAGCTTCACCCTTTGAGAGAGGGAAAAGTGAGGCTGTGCTGAGCTGAGAATGCAGGCCCAGACTGGGCTGGCTCAGTGCTGCACCTTCCCCCAGCCCCTGCCATGGGAACCAAACCCAGTTCCCACCCTCTGGGTCTTAAGGCCCAGTGCAGCATCCCTCCCCACAGGGCCCCACCCAGGGCTCCTGGGAGTCACTCACCCCATTGTCATCTTTATTGTCCAGCAGCAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49702115|49702405 hsa-miR-18a-5p 0 0 1
chr3:49702115|49702405 hsa-miR-18a-3p 0 0 1
chr3:49702115|49702405 hsa-miR-107 0 0 1
chr3:49702115|49702405 hsa-miR-208a-5p 0 0 1
chr3:49702115|49702405 hsa-miR-208a-3p 0 0 1
chr3:49702115|49702405 hsa-miR-18b-5p 0 0 1
chr3:49702115|49702405 hsa-miR-18b-3p 0 0 1
chr3:49702115|49702405 hsa-miR-608 0 0 1
chr3:49702115|49702405 hsa-miR-612 1 0 1
chr3:49702115|49702405 hsa-miR-622 0 0 1
chr3:49702115|49702405 hsa-miR-625-5p 0 0 1
chr3:49702115|49702405 hsa-miR-625-3p 0 0 1
chr3:49702115|49702405 hsa-miR-629-5p 0 0 1
chr3:49702115|49702405 hsa-miR-629-3p 0 0 1
chr3:49702115|49702405 hsa-miR-637 1 0 1
chr3:49702115|49702405 hsa-miR-659-5p 0 0 1
chr3:49702115|49702405 hsa-miR-659-3p 0 0 1
chr3:49702115|49702405 hsa-miR-665 0 0 1
chr3:49702115|49702405 hsa-miR-208b-5p 0 0 1
chr3:49702115|49702405 hsa-miR-208b-3p 0 0 1
chr3:49702115|49702405 hsa-miR-939-5p 0 0 1
chr3:49702115|49702405 hsa-miR-939-3p 0 0 1
chr3:49702115|49702405 hsa-miR-1200 0 0 1
chr3:49702115|49702405 hsa-miR-1205 0 0 1
chr3:49702115|49702405 hsa-miR-1286 0 0 1
chr3:49702115|49702405 hsa-miR-1287-5p 0 0 1
chr3:49702115|49702405 hsa-miR-1287-3p 0 0 1
chr3:49702115|49702405 hsa-miR-1291 0 0 1
chr3:49702115|49702405 hsa-miR-1293 0 0 1
chr3:49702115|49702405 hsa-miR-1275 0 0 1
chr3:49702115|49702405 hsa-miR-1292-5p 0 0 1
chr3:49702115|49702405 hsa-miR-1292-3p 0 0 1
chr3:49702115|49702405 hsa-miR-127-5p 0 0 1
chr3:49702115|49702405 hsa-miR-491-5p 0 0 1
chr3:49702115|49702405 hsa-miR-146b-3p 0 0 1
chr3:49702115|49702405 hsa-miR-1184 0 0 1
chr3:49702115|49702405 hsa-miR-331-5p 0 0 1
chr3:49702115|49702405 hsa-miR-1207-5p 1 0 1
chr3:49702115|49702405 hsa-miR-342-5p 0 0 1
chr3:49702115|49702405 hsa-miR-371-5p 0 0 1
chr3:49702115|49702405 hsa-miR-1233 0 0 1
chr3:49702115|49702405 hsa-miR-642 0 0 1
chr3:49702115|49702405 hsa-miR-103 0 0 1
chr3:49702115|49702405 hsa-miR-1285 0 0 1
chr3:49702115|49702405 hsa-miR-544 0 0 1
chr3:49702115|49702405 hsa-miR-499-5p 0 0 1
chr3:49702115|49702405 hsa-miR-663a 1 0 0
chr3:49702115|49702405 hsa-miR-762 1 0 0
chr3:49702115|49702405 hsa-miR-2861 1 0 0
chr3:49702115|49702405 hsa-miR-1268b 1 0 0
chr3:49702115|49702405 hsa-miR-3135b 1 0 0
chr3:49702115|49702405 hsa-miR-4462 1 0 0
chr3:49702115|49702405 hsa-miR-4492 1 0 0
chr3:49702115|49702405 hsa-miR-4498 1 0 0
chr3:49702115|49702405 hsa-miR-4507 1 0 0
chr3:49702115|49702405 hsa-miR-4525 1 0 0
chr3:49702115|49702405 hsa-miR-1587 1 0 0
chr3:49702115|49702405 hsa-miR-4651 1 0 0
chr3:49702115|49702405 hsa-miR-4656 1 0 0
chr3:49702115|49702405 hsa-miR-4706 1 0 0
chr3:49702115|49702405 hsa-miR-4734 1 0 0
chr3:49702115|49702405 hsa-miR-4741 1 0 0
chr3:49702115|49702405 hsa-miR-4767 1 0 0
chr3:49702115|49702405 hsa-miR-5698 1 0 0
chr3:49702115|49702405 hsa-miR-5787 1 0 0
chr3:49702115|49702405 hsa-miR-6085 1 0 0
chr3:49702115|49702405 hsa-miR-6086 1 0 0
chr3:49702115|49702405 hsa-miR-6088 1 0 0
chr3:49702115|49702405 hsa-miR-6131 1 0 0
chr3:49702115|49702405 hsa-miR-6132 1 0 0
chr3:49702115|49702405 hsa-miR-6860 1 0 0
chr3:49702115|49702405 hsa-miR-7150 1 0 0
chr3:49702115|49702405 hsa-miR-8075 1 0 0
chr3:49702115|49702405 hsa-miR-8089 1 0 0
chr3:49702115|49702405 hsa-miR-370-3p 1 0 0
chr3:49702115|49702405 hsa-miR-92a-2-5p 1 0 0
chr3:49702115|49702405 hsa-miR-128-1-5p 1 0 0
chr3:49702115|49702405 hsa-miR-7155-5p 1 0 0
chr3:49702115|49702405 hsa-miR-671-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6825-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6894-5p 1 0 0
chr3:49702115|49702405 hsa-miR-4687-3p 1 0 0
chr3:49702115|49702405 hsa-miR-3692-5p 1 0 0
chr3:49702115|49702405 hsa-miR-7114-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6744-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6746-5p 1 0 0
chr3:49702115|49702405 hsa-miR-4722-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6730-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1301-3p 1 0 0
chr3:49702115|49702405 hsa-miR-6721-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6742-5p 1 0 0
chr3:49702115|49702405 hsa-miR-3151-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6748-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6793-5p 1 0 0
chr3:49702115|49702405 hsa-miR-185-3p 1 0 0
chr3:49702115|49702405 hsa-miR-6829-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6732-5p 1 0 0
chr3:49702115|49702405 hsa-miR-23a-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6798-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6782-5p 1 0 0
chr3:49702115|49702405 hsa-miR-5008-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6786-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1229-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6784-5p 1 0 0
chr3:49702115|49702405 hsa-miR-296-3p 1 0 0
chr3:49702115|49702405 hsa-miR-4638-3p 1 0 0
chr3:49702115|49702405 hsa-miR-4446-3p 1 0 0
chr3:49702115|49702405 hsa-miR-149-3p 1 0 0
chr3:49702115|49702405 hsa-miR-6800-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6878-5p 1 0 0
chr3:49702115|49702405 hsa-miR-7160-3p 1 0 0
chr3:49702115|49702405 hsa-miR-2277-5p 1 0 0
chr3:49702115|49702405 hsa-miR-10400-5p 1 0 0
chr3:49702115|49702405 hsa-miR-4763-3p 1 0 0
chr3:49702115|49702405 hsa-miR-6769b-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6787-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6812-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6816-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1343-5p 1 0 0
chr3:49702115|49702405 hsa-miR-5001-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6726-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6737-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6743-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6752-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6756-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6803-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6813-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6819-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1249-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6722-3p 1 0 0
chr3:49702115|49702405 hsa-miR-6751-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6779-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6808-5p 1 0 0
chr3:49702115|49702405 hsa-miR-7111-5p 1 0 0
chr3:49702115|49702405 hsa-miR-3620-5p 1 0 0
chr3:49702115|49702405 hsa-miR-4728-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6780b-5p 1 0 0
chr3:49702115|49702405 hsa-miR-10396b-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1237-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1909-3p 1 0 0
chr3:49702115|49702405 hsa-miR-4649-5p 1 0 0
chr3:49702115|49702405 hsa-miR-4725-3p 1 0 0
chr3:49702115|49702405 hsa-miR-4745-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6729-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6795-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6846-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6848-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6883-5p 1 0 0
chr3:49702115|49702405 hsa-miR-4758-5p 1 0 0
chr3:49702115|49702405 hsa-miR-3198 1 0 0
chr3:49702115|49702405 hsa-miR-3940-5p 1 0 0
chr3:49702115|49702405 hsa-miR-1914-3p 1 0 0
chr3:49702115|49702405 hsa-miR-4665-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6855-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6762-5p 1 0 0
chr3:49702115|49702405 hsa-miR-6775-3p 1 0 0
chr3:49702115|49702405 hsa-miR-4690-3p 1 0 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49702115|49702405
ORF Type ORF1
Protein Length 62
Nucleotide Length 186
Protein Sequence MRMQAQTGLAQCCTFPQPLPWEPNPVPTLWVLRPSAASLPTGPHPGLLGVTHPIVIFIVQQQ
Nucleotide Sequence CTGAGAATGCAGGCCCAGACTGGGCTGGCTCAGTGCTGCACCTTCCCCCAGCCCCTGCCATGGGAACCAAACCCAGTTCCCACCCTCTGGGTCTTAAGGCCCAGTGCAGCATCCCTCCCCACAGGGCCCCACCCAGGGCTCCTGGGAGTCACTCACCCCATTGTCATCTTTATTGTCCAGCAGCAG
CircID chr3:49702115|49702405
ORF Type ORF2
Protein Length 32
Nucleotide Length 99
Protein Sequence MAFSCRNLRNLVRKIYLEASPFERGKSEAVLS
Nucleotide Sequence CTGGCGTTCTCCTGCAGAAACTTGCGAAACTTGGTCAGGAAGATATACCTAGAAGCTTCACCCTTTGAGAGAGGGAAAAGTGAGGCTGTGCTGAGCTGA
CircID chr3:49702115|49702405
ORF Type ORF3
Protein Length 25
Nucleotide Length 78
Protein Sequence MGWLSAAPSPSPCHGNQTQFPPSGS
Nucleotide Sequence CTGGGCTGGCTCAGTGCTGCACCTTCCCCCAGCCCCTGCCATGGGAACCAAACCCAGTTCCCACCCTCTGGGTCTTAA
CircID chr3:49702115|49702405
ORF Type ORF4
Protein Length 50
Nucleotide Length 150
Protein Sequence MHLPPAPAMGTKPSSHPLGLKAQCSIPPHRAPPRAPGSHSPHCHLYCPAA
Nucleotide Sequence CTGCACCTTCCCCCAGCCCCTGCCATGGGAACCAAACCCAGTTCCCACCCTCTGGGTCTTAAGGCCCAGTGCAGCATCCCTCCCCACAGGGCCCCACCCAGGGCTCCTGGGAGTCACTCACCCCATTGTCATCTTTATTGTCCAGCAGCA
CircID chr3:49702115|49702405
ORF Type ORF5
Protein Length 30
Nucleotide Length 93
Protein Sequence LLLDNKDDNGVSDSQEPWVGPCGEGCCTGP
Nucleotide Sequence CTGCTGCTGGACAATAAAGATGACAATGGGGTGAGTGACTCCCAGGAGCCCTGGGTGGGGCCCTGTGGGGAGGGATGCTGCACTGGGCCTTAA
CircID chr3:49702115|49702405
ORF Type ORF6
Protein Length 52
Nucleotide Length 156
Protein Sequence MGEGAALSQPSLGLHSQLSTASLFPLSKGEASRYIFLTKFRKFLQENASGRG
Nucleotide Sequence CTGGGGGAAGGTGCAGCACTGAGCCAGCCCAGTCTGGGCCTGCATTCTCAGCTCAGCACAGCCTCACTTTTCCCTCTCTCAAAGGGTGAAGCTTCTAGGTATATCTTCCTGACCAAGTTTCGCAAGTTTCTGCAGGAGAACGCCAGTGGCCGGGGG
CircID chr3:49702115|49702405
ORF Type ORF7
Protein Length 57
Nucleotide Length 174
Protein Sequence MGGALWGGMLHWALRPRGWELGLVPMAGAGGRCSTEPAQSGPAFSAQHSLTFPSLKG
Nucleotide Sequence CTGGGTGGGGCCCTGTGGGGAGGGATGCTGCACTGGGCCTTAAGACCCAGAGGGTGGGAACTGGGTTTGGTTCCCATGGCAGGGGCTGGGGGAAGGTGCAGCACTGAGCCAGCCCAGTCTGGGCCTGCATTCTCAGCTCAGCACAGCCTCACTTTTCCCTCTCTCAAAGGGTGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab