CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49721198|49721338
Strand -
CircType exon
Host Gene ENSG00000164068.14;
Algorism CIRI2;
Sequence CAGCACCTGATGAACAACAAGGACTGCTTCTTCTGCAAAACCACCATCGTGTCTGTAGAGGACTGGGAGAAGGGAGCCAATACGAGTACTACCTCCTCAGCTGCCTAGCCCTCACAGCCTGTGCCATCCTGGAACCTCCAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49721198|49721338 hsa-let-7b-5p 0 0 1
chr3:49721198|49721338 hsa-let-7b-3p 0 0 1
chr3:49721198|49721338 hsa-let-7c-5p 0 0 1
chr3:49721198|49721338 hsa-let-7c-3p 0 0 1
chr3:49721198|49721338 hsa-let-7d-5p 0 0 1
chr3:49721198|49721338 hsa-let-7d-3p 0 0 1
chr3:49721198|49721338 hsa-let-7e-5p 0 0 1
chr3:49721198|49721338 hsa-let-7e-3p 0 0 1
chr3:49721198|49721338 hsa-miR-98-5p 0 0 1
chr3:49721198|49721338 hsa-miR-98-3p 0 0 1
chr3:49721198|49721338 hsa-miR-183-5p 0 0 1
chr3:49721198|49721338 hsa-miR-183-3p 0 0 1
chr3:49721198|49721338 hsa-let-7g-5p 0 0 1
chr3:49721198|49721338 hsa-let-7g-3p 0 0 1
chr3:49721198|49721338 hsa-let-7i-5p 0 0 1
chr3:49721198|49721338 hsa-let-7i-3p 0 0 1
chr3:49721198|49721338 hsa-miR-150-5p 0 0 1
chr3:49721198|49721338 hsa-miR-150-3p 0 0 1
chr3:49721198|49721338 hsa-miR-196b-5p 0 0 1
chr3:49721198|49721338 hsa-miR-196b-3p 0 0 1
chr3:49721198|49721338 hsa-miR-507 0 0 1
chr3:49721198|49721338 hsa-miR-557 0 0 1
chr3:49721198|49721338 hsa-miR-298 0 1 1
chr3:49721198|49721338 hsa-miR-665 0 0 1
chr3:49721198|49721338 hsa-miR-940 1 0 1
chr3:49721198|49721338 hsa-miR-1206 0 0 1
chr3:49721198|49721338 hsa-miR-1294 0 0 1
chr3:49721198|49721338 hsa-miR-1278 0 0 1
chr3:49721198|49721338 hsa-miR-139-5p 0 0 1
chr3:49721198|49721338 hsa-miR-125a-3p 0 0 1
chr3:49721198|49721338 hsa-miR-532-3p 0 0 1
chr3:49721198|49721338 hsa-miR-876-3p 0 0 1
chr3:49721198|49721338 hsa-miR-450b-5p 0 0 1
chr3:49721198|49721338 hsa-miR-323-5p 0 0 1
chr3:49721198|49721338 hsa-let-7a 0 0 1
chr3:49721198|49721338 hsa-let-7f 0 0 1
chr3:49721198|49721338 hsa-miR-196a 0 0 1
chr3:49721198|49721338 hsa-miR-612 1 0 0
chr3:49721198|49721338 hsa-miR-638 1 0 0
chr3:49721198|49721338 hsa-miR-3147 0 1 0
chr3:49721198|49721338 hsa-miR-3185 0 1 0
chr3:49721198|49721338 hsa-miR-4298 1 0 0
chr3:49721198|49721338 hsa-miR-3909 0 1 0
chr3:49721198|49721338 hsa-miR-3945 1 0 0
chr3:49721198|49721338 hsa-miR-2392 0 1 0
chr3:49721198|49721338 hsa-miR-1587 1 0 0
chr3:49721198|49721338 hsa-miR-4647 1 0 0
chr3:49721198|49721338 hsa-miR-4710 1 0 0
chr3:49721198|49721338 hsa-miR-4721 1 1 0
chr3:49721198|49721338 hsa-miR-4741 1 0 0
chr3:49721198|49721338 hsa-miR-5787 1 0 0
chr3:49721198|49721338 hsa-miR-7974 0 1 0
chr3:49721198|49721338 hsa-miR-12127 1 1 0
chr3:49721198|49721338 hsa-miR-12128 1 0 0
chr3:49721198|49721338 hsa-miR-125b-1-3p 1 0 0
chr3:49721198|49721338 hsa-miR-6861-5p 1 0 0
chr3:49721198|49721338 hsa-miR-4687-3p 1 0 0
chr3:49721198|49721338 hsa-miR-7847-3p 0 1 0
chr3:49721198|49721338 hsa-miR-4722-5p 1 0 0
chr3:49721198|49721338 hsa-miR-23b-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6829-5p 1 0 0
chr3:49721198|49721338 hsa-miR-1226-5p 1 1 0
chr3:49721198|49721338 hsa-miR-4640-5p 1 0 0
chr3:49721198|49721338 hsa-let-7f-5p 0 1 0
chr3:49721198|49721338 hsa-let-7a-5p 0 1 0
chr3:49721198|49721338 hsa-miR-7106-3p 0 1 0
chr3:49721198|49721338 hsa-miR-5088-3p 0 1 0
chr3:49721198|49721338 hsa-miR-19b-1-5p 0 1 0
chr3:49721198|49721338 hsa-miR-196a-5p 0 1 0
chr3:49721198|49721338 hsa-miR-4763-3p 1 0 0
chr3:49721198|49721338 hsa-miR-5001-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6803-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6851-5p 1 1 0
chr3:49721198|49721338 hsa-miR-6751-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6780a-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6808-5p 1 0 0
chr3:49721198|49721338 hsa-miR-320a-5p 0 1 0
chr3:49721198|49721338 hsa-miR-4685-3p 0 1 0
chr3:49721198|49721338 hsa-miR-6866-3p 0 1 0
chr3:49721198|49721338 hsa-miR-3620-5p 1 0 0
chr3:49721198|49721338 hsa-miR-449c-5p 1 0 0
chr3:49721198|49721338 hsa-miR-4649-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6729-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6846-5p 1 0 0
chr3:49721198|49721338 hsa-miR-6848-5p 1 0 0
chr3:49721198|49721338 hsa-miR-939-5p 1 0 0
chr3:49721198|49721338 hsa-miR-7151-3p 1 0 0
chr3:49721198|49721338 hsa-miR-10398-5p 1 1 0
chr3:49721198|49721338 hsa-miR-6715b-5p 1 1 0
chr3:49721198|49721338 hsa-miR-19b-2-5p 0 1 0
chr3:49721198|49721338 hsa-miR-519a-2-5p 0 1 0
chr3:49721198|49721338 hsa-miR-520b-5p 0 1 0
Target Genes
       

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Target miRNA Expression in different cancers

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circRNA Open Reading Frame (ORF)
CircID chr3:49721198|49721338
ORF Type ORF1
Protein Length 33
Nucleotide Length 102
Protein Sequence MMNNKDCFFCKTTIVSVEDWEKGANTSTTSSAA
Nucleotide Sequence CTGATGAACAACAAGGACTGCTTCTTCTGCAAAACCACCATCGTGTCTGTAGAGGACTGGGAGAAGGGAGCCAATACGAGTACTACCTCCTCAGCTGCCTAG
CircID chr3:49721198|49721338
ORF Type ORF2
Protein Length 39
Nucleotide Length 117
Protein Sequence MLLLQNHHRVCRGLGEGSQYEYYLLSCLALTACAILEPP
Nucleotide Sequence CTGCTTCTTCTGCAAAACCACCATCGTGTCTGTAGAGGACTGGGAGAAGGGAGCCAATACGAGTACTACCTCCTCAGCTGCCTAGCCCTCACAGCCTGTGCCATCCTGGAACCTCCA
CircID chr3:49721198|49721338
ORF Type ORF3
Protein Length 26
Nucleotide Length 78
Protein Sequence MAPFSQSSTDTMVVLQKKQSLLFIRC
Nucleotide Sequence TTGGCTCCCTTCTCCCAGTCCTCTACAGACACGATGGTGGTTTTGCAGAAGAAGCAGTCCTTGTTGTTCATCAGGTGC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab