CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49722706|49723067
Strand +
CircType exon
Host Gene ENSG00000173540.11;
Algorism CIRI2;
Sequence CCTTTCTTCGTCCTCAACAGTGACGTGATCTGCGATTTCCCCTTCCAAGCCATGGTGCAGTTCCACCGGCACCATGGCCAGGAGGGCTCCATCCTGGTAAGGCGCCAGGTCTTCTCTCTCTTGACACTTTCACCCTCCATGCCCAGCCTCCCATGCCCCCTAGCCTTCATCTGCCTTCGGATGTTATGGATACAGAGCTGTGCAGTATGTATCTTTAAGCACTTGGGGCAGAGTCTCTTGAGATCTGGAACGGCATGTGTATCAAGGCTTAGGAACACTGGACTAGGTCCGAGGTCCCCTTCCTTGCATTCAGGTGACCAAGGTGGAGGAACCCTCCAAGTACGGTGTGGTGGTGTGTGAGG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49722706|49723067 hsa-miR-217-5p 0 0 1
chr3:49722706|49723067 hsa-miR-217-3p 0 0 1
chr3:49722706|49723067 hsa-miR-302a-5p 0 0 1
chr3:49722706|49723067 hsa-miR-302a-3p 0 0 1
chr3:49722706|49723067 hsa-miR-302b-5p 0 0 1
chr3:49722706|49723067 hsa-miR-302b-3p 0 0 1
chr3:49722706|49723067 hsa-miR-302c-5p 0 0 1
chr3:49722706|49723067 hsa-miR-302c-3p 0 0 1
chr3:49722706|49723067 hsa-miR-302d-5p 0 0 1
chr3:49722706|49723067 hsa-miR-302d-3p 0 0 1
chr3:49722706|49723067 hsa-miR-372-5p 0 0 1
chr3:49722706|49723067 hsa-miR-372-3p 0 0 1
chr3:49722706|49723067 hsa-miR-373-5p 0 0 1
chr3:49722706|49723067 hsa-miR-373-3p 0 0 1
chr3:49722706|49723067 hsa-miR-377-5p 0 0 1
chr3:49722706|49723067 hsa-miR-377-3p 0 0 1
chr3:49722706|49723067 hsa-miR-135b-5p 0 0 1
chr3:49722706|49723067 hsa-miR-135b-3p 0 0 1
chr3:49722706|49723067 hsa-miR-335-5p 0 0 1
chr3:49722706|49723067 hsa-miR-335-3p 0 0 1
chr3:49722706|49723067 hsa-miR-432-5p 0 0 1
chr3:49722706|49723067 hsa-miR-432-3p 0 0 1
chr3:49722706|49723067 hsa-miR-520e-5p 0 0 1
chr3:49722706|49723067 hsa-miR-520e-3p 0 0 1
chr3:49722706|49723067 hsa-miR-520f-5p 0 0 1
chr3:49722706|49723067 hsa-miR-520f-3p 0 0 1
chr3:49722706|49723067 hsa-miR-520b-5p 0 0 1
chr3:49722706|49723067 hsa-miR-520b-3p 0 0 1
chr3:49722706|49723067 hsa-miR-554 -7 0 1
chr3:49722706|49723067 hsa-miR-612 -18 1 1
chr3:49722706|49723067 hsa-miR-631 -13 1 1
chr3:49722706|49723067 hsa-miR-890 0 0 1
chr3:49722706|49723067 hsa-miR-1208 -10 1 1
chr3:49722706|49723067 hsa-miR-1253 -6 0 1
chr3:49722706|49723067 hsa-miR-1267 0 0 1
chr3:49722706|49723067 hsa-miR-302e 1 0 1
chr3:49722706|49723067 hsa-miR-513c-5p 0 0 1
chr3:49722706|49723067 hsa-miR-513c-3p 0 0 1
chr3:49722706|49723067 hsa-miR-1825 -2 0 1
chr3:49722706|49723067 hsa-miR-1224-5p -11 1 1
chr3:49722706|49723067 hsa-miR-767-5p -7 1 1
chr3:49722706|49723067 hsa-miR-485-5p -19 1 1
chr3:49722706|49723067 hsa-miR-199a-5p -7 1 1
chr3:49722706|49723067 hsa-miR-525-5p -3 0 1
chr3:49722706|49723067 hsa-miR-566 0 0 1
chr3:49722706|49723067 hsa-miR-199b-5p -7 0 1
chr3:49722706|49723067 hsa-miR-324-3p 0 0 1
chr3:49722706|49723067 hsa-miR-520a-5p -2 0 1
chr3:49722706|49723067 hsa-miR-520d-3p 2 0 1
chr3:49722706|49723067 hsa-miR-509-3-5p -6 0 1
chr3:49722706|49723067 hsa-miR-509-5p -6 0 1
chr3:49722706|49723067 hsa-miR-342-3p -14 1 1
chr3:49722706|49723067 hsa-miR-520a-3p 0 0 1
chr3:49722706|49723067 hsa-miR-520c-3p 2 0 1
chr3:49722706|49723067 hsa-miR-362-3p -2 0 1
chr3:49722706|49723067 hsa-miR-220b 0 0 1
chr3:49722706|49723067 hsa-miR-1233 0 0 1
chr3:49722706|49723067 hsa-miR-1285 0 0 1
chr3:49722706|49723067 hsa-miR-135a 0 0 1
chr3:49722706|49723067 hsa-miR-768-5p 0 0 1
chr3:49722706|49723067 hsa-miR-329 0 0 1
chr3:49722706|49723067 hsa-miR-220a 0 0 1
chr3:49722706|49723067 hsa-miR-3147 -26 1 0
chr3:49722706|49723067 hsa-miR-3154 -12 1 0
chr3:49722706|49723067 hsa-miR-4253 -16 1 0
chr3:49722706|49723067 hsa-miR-3917 -10 1 0
chr3:49722706|49723067 hsa-miR-1268b -27 1 0
chr3:49722706|49723067 hsa-miR-4476 -3 1 0
chr3:49722706|49723067 hsa-miR-3689c -18 1 0
chr3:49722706|49723067 hsa-miR-4505 -22 1 0
chr3:49722706|49723067 hsa-miR-4522 -8 1 0
chr3:49722706|49723067 hsa-miR-4648 -9 1 0
chr3:49722706|49723067 hsa-miR-5787 -29 1 0
chr3:49722706|49723067 hsa-miR-6126 -13 1 0
chr3:49722706|49723067 hsa-miR-6860 -18 1 0
chr3:49722706|49723067 hsa-miR-9-5p -4 1 0
chr3:49722706|49723067 hsa-miR-18a-3p -16 1 0
chr3:49722706|49723067 hsa-miR-6804-5p -9 1 0
chr3:49722706|49723067 hsa-miR-6515-5p -15 1 0
chr3:49722706|49723067 hsa-miR-3622b-5p -22 1 0
chr3:49722706|49723067 hsa-miR-3187-3p -13 1 0
chr3:49722706|49723067 hsa-miR-23b-5p -9 1 0
chr3:49722706|49723067 hsa-miR-6783-5p -12 1 0
chr3:49722706|49723067 hsa-miR-6871-5p -15 1 0
chr3:49722706|49723067 hsa-miR-6732-5p -23 1 0
chr3:49722706|49723067 hsa-miR-3130-3p -3 1 0
chr3:49722706|49723067 hsa-miR-4793-3p -6 1 0
chr3:49722706|49723067 hsa-miR-30b-3p -16 1 0
chr3:49722706|49723067 hsa-miR-3667-3p 0 1 0
chr3:49722706|49723067 hsa-miR-3202 -9 1 0
chr3:49722706|49723067 hsa-miR-6830-5p -11 1 0
chr3:49722706|49723067 hsa-miR-660-3p 1 1 0
chr3:49722706|49723067 hsa-miR-4687-5p 1 1 0
chr3:49722706|49723067 hsa-miR-3180-5p -12 1 0
chr3:49722706|49723067 hsa-miR-1288-5p -8 1 0
chr3:49722706|49723067 hsa-miR-605-3p -9 1 0
chr3:49722706|49723067 hsa-miR-1207-5p -16 1 0
chr3:49722706|49723067 hsa-miR-1233-5p -25 1 0
chr3:49722706|49723067 hsa-miR-3689b-3p -18 1 0
chr3:49722706|49723067 hsa-miR-6893-5p -15 1 0
chr3:49722706|49723067 hsa-miR-6779-5p -25 1 0
chr3:49722706|49723067 hsa-miR-6780a-5p -19 1 0
chr3:49722706|49723067 hsa-miR-6879-5p -18 1 0
chr3:49722706|49723067 hsa-miR-5189-5p -15 1 0
chr3:49722706|49723067 hsa-miR-6862-5p -18 1 0
chr3:49722706|49723067 hsa-miR-328-5p -28 1 0
chr3:49722706|49723067 hsa-miR-3689a-3p -18 1 0
chr3:49722706|49723067 hsa-miR-4685-5p -13 1 0
chr3:49722706|49723067 hsa-miR-6848-5p -30 1 0
chr3:49722706|49723067 hsa-miR-3187-5p -16 1 0
chr3:49722706|49723067 hsa-miR-1910-3p -7 1 0
chr3:49722706|49723067 hsa-miR-6511a-5p -16 1 0
chr3:49722706|49723067 hsa-miR-6856-5p -14 1 0
chr3:49722706|49723067 hsa-miR-1285-3p -14 1 0
chr3:49722706|49723067 hsa-miR-6876-5p -8 1 0
chr3:49722706|49723067 hsa-miR-370-5p -13 1 0
chr3:49722706|49723067 hsa-miR-514b-5p -12 1 0
chr3:49722706|49723067 hsa-miR-10395-3p -4 1 0
Target Genes
       

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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49722706|49723067
ORF Type ORF1
Protein Length 102
Nucleotide Length 309
Protein Sequence MVQFHRHHGQEGSILVRRQVFSLLTLSPSMPSLPCPLAFICLRMLWIQSCAVCIFKHLGQSLLRSGTACVSRLRNTGLGPRSPSLHSGDQGGGTLQVRCGGV
Nucleotide Sequence ATGGTGCAGTTCCACCGGCACCATGGCCAGGAGGGCTCCATCCTGGTAAGGCGCCAGGTCTTCTCTCTCTTGACACTTTCACCCTCCATGCCCAGCCTCCCATGCCCCCTAGCCTTCATCTGCCTTCGGATGTTATGGATACAGAGCTGTGCAGTATGTATCTTTAAGCACTTGGGGCAGAGTCTCTTGAGATCTGGAACGGCATGTGTATCAAGGCTTAGGAACACTGGACTAGGTCCGAGGTCCCCTTCCTTGCATTCAGGTGACCAAGGTGGAGGAACCCTCCAAGTACGGTGTGGTGGTGTGTGA
CircID chr3:49722706|49723067
ORF Type ORF2
Protein Length 62
Nucleotide Length 189
Protein Sequence MRFPLPSHGAVPPAPWPGGLHPGKAPGLLSLDTFTLHAQPPMPPSLHLPSDVMDTELCSMYL
Nucleotide Sequence CTGCGATTTCCCCTTCCAAGCCATGGTGCAGTTCCACCGGCACCATGGCCAGGAGGGCTCCATCCTGGTAAGGCGCCAGGTCTTCTCTCTCTTGACACTTTCACCCTCCATGCCCAGCCTCCCATGCCCCCTAGCCTTCATCTGCCTTCGGATGTTATGGATACAGAGCTGTGCAGTATGTATCTTTAA
CircID chr3:49722706|49723067
ORF Type ORF3
Protein Length 56
Nucleotide Length 168
Protein Sequence MKARGHGRLGMEGESVKREKTWRLTRMEPSWPWCRWNCTMAWKGKSQITSLLRTKK
Nucleotide Sequence ATGAAGGCTAGGGGGCATGGGAGGCTGGGCATGGAGGGTGAAAGTGTCAAGAGAGAGAAGACCTGGCGCCTTACCAGGATGGAGCCCTCCTGGCCATGGTGCCGGTGGAACTGCACCATGGCTTGGAAGGGGAAATCGCAGATCACGTCACTGTTGAGGACGAAGAAA
CircID chr3:49722706|49723067
ORF Type ORF4
Protein Length 46
Nucleotide Length 141
Protein Sequence MGGWAWRVKVSRERRPGALPGWSPPGHGAGGTAPWLGRGNRRSRHC
Nucleotide Sequence ATGGGAGGCTGGGCATGGAGGGTGAAAGTGTCAAGAGAGAGAAGACCTGGCGCCTTACCAGGATGGAGCCCTCCTGGCCATGGTGCCGGTGGAACTGCACCATGGCTTGGAAGGGGAAATCGCAGATCACGTCACTGTTGA
CircID chr3:49722706|49723067
ORF Type ORF5
Protein Length 36
Nucleotide Length 108
Protein Sequence MAPYQDGALLAMVPVELHHGLEGEIADHVTVEDEER
Nucleotide Sequence CTGGCGCCTTACCAGGATGGAGCCCTCCTGGCCATGGTGCCGGTGGAACTGCACCATGGCTTGGAAGGGGAAATCGCAGATCACGTCACTGTTGAGGACGAAGAAAGG
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab