CircRNA Information

General Information
circRNA Basic Information
CircID chr3:49804271|49804423
Strand +
CircType exon
Host Gene ENSG00000185614.4;
Algorism CIRI2;
Sequence CTCCGAGAAGCCAGAGTCCCAGTCCAGGGCATGCTCCCTGGGGCCTCCCAAGGCTGCATCCCTGTCTTCTGTCACCACTGCTTCCTCCTCCTCCTCTTCCTCCTCCTCCACACAGCAGACTGAGTCCTCTTCCAAGGCACCCGAGGCCCTAAG
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:49804271|49804423 hsa-miR-149-5p 0 0 1
chr3:49804271|49804423 hsa-miR-149-3p 0 0 1
chr3:49804271|49804423 hsa-miR-422a 0 0 1
chr3:49804271|49804423 hsa-miR-622 1 1 1
chr3:49804271|49804423 hsa-miR-1296-5p 0 0 1
chr3:49804271|49804423 hsa-miR-1296-3p 0 0 1
chr3:49804271|49804423 hsa-miR-765 1 1 1
chr3:49804271|49804423 hsa-miR-874-5p 0 0 1
chr3:49804271|49804423 hsa-miR-874-3p 0 0 1
chr3:49804271|49804423 hsa-miR-1288-5p 0 0 1
chr3:49804271|49804423 hsa-miR-1288-3p 0 0 1
chr3:49804271|49804423 hsa-miR-146b-3p 0 0 1
chr3:49804271|49804423 hsa-miR-542-3p 0 0 1
chr3:49804271|49804423 hsa-miR-7 0 0 1
chr3:49804271|49804423 hsa-miR-378 0 0 1
chr3:49804271|49804423 hsa-miR-644 0 0 1
chr3:49804271|49804423 hsa-miR-1269 0 0 1
chr3:49804271|49804423 hsa-miR-147 0 0 1
chr3:49804271|49804423 hsa-miR-608 1 0 0
chr3:49804271|49804423 hsa-miR-632 1 0 0
chr3:49804271|49804423 hsa-miR-890 0 1 0
chr3:49804271|49804423 hsa-miR-1182 1 0 0
chr3:49804271|49804423 hsa-miR-1269a 0 1 0
chr3:49804271|49804423 hsa-miR-1275 1 0 0
chr3:49804271|49804423 hsa-miR-3125 1 1 0
chr3:49804271|49804423 hsa-miR-3131 1 0 0
chr3:49804271|49804423 hsa-miR-3132 1 0 0
chr3:49804271|49804423 hsa-miR-378b 0 1 0
chr3:49804271|49804423 hsa-miR-3154 1 0 0
chr3:49804271|49804423 hsa-miR-378c 0 1 0
chr3:49804271|49804423 hsa-miR-4298 1 0 0
chr3:49804271|49804423 hsa-miR-4271 1 1 0
chr3:49804271|49804423 hsa-miR-3911 1 1 0
chr3:49804271|49804423 hsa-miR-3916 1 0 0
chr3:49804271|49804423 hsa-miR-378e 0 1 0
chr3:49804271|49804423 hsa-miR-378h 0 1 0
chr3:49804271|49804423 hsa-miR-4476 1 0 0
chr3:49804271|49804423 hsa-miR-2392 1 0 0
chr3:49804271|49804423 hsa-miR-4510 1 0 0
chr3:49804271|49804423 hsa-miR-4515 0 1 0
chr3:49804271|49804423 hsa-miR-4516 1 0 0
chr3:49804271|49804423 hsa-miR-1269b 0 1 0
chr3:49804271|49804423 hsa-miR-378i 0 1 0
chr3:49804271|49804423 hsa-miR-4644 1 0 0
chr3:49804271|49804423 hsa-miR-4656 1 0 0
chr3:49804271|49804423 hsa-miR-4688 1 0 0
chr3:49804271|49804423 hsa-miR-4721 1 0 0
chr3:49804271|49804423 hsa-miR-4739 1 1 0
chr3:49804271|49804423 hsa-miR-4779 1 0 0
chr3:49804271|49804423 hsa-miR-5698 1 0 0
chr3:49804271|49804423 hsa-miR-6124 1 0 0
chr3:49804271|49804423 hsa-miR-6127 1 0 0
chr3:49804271|49804423 hsa-miR-6133 1 0 0
chr3:49804271|49804423 hsa-miR-6165 1 0 0
chr3:49804271|49804423 hsa-miR-6745 1 0 0
chr3:49804271|49804423 hsa-miR-8085 1 0 0
chr3:49804271|49804423 hsa-miR-9500 1 0 0
chr3:49804271|49804423 hsa-miR-12114 1 0 0
chr3:49804271|49804423 hsa-miR-12118 1 0 0
chr3:49804271|49804423 hsa-miR-135a-3p 0 1 0
chr3:49804271|49804423 hsa-miR-4433b-3p 1 0 0
chr3:49804271|49804423 hsa-miR-7106-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6825-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6894-5p 1 0 0
chr3:49804271|49804423 hsa-miR-4687-3p 1 0 0
chr3:49804271|49804423 hsa-miR-6799-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6510-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3692-5p 1 0 0
chr3:49804271|49804423 hsa-miR-766-5p 1 1 0
chr3:49804271|49804423 hsa-miR-6833-5p 1 0 0
chr3:49804271|49804423 hsa-miR-5187-5p 1 0 0
chr3:49804271|49804423 hsa-miR-7114-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6515-5p 1 1 0
chr3:49804271|49804423 hsa-miR-6880-5p 1 0 0
chr3:49804271|49804423 hsa-miR-7847-3p 1 1 0
chr3:49804271|49804423 hsa-miR-4695-5p 1 1 0
chr3:49804271|49804423 hsa-miR-6867-5p 0 1 0
chr3:49804271|49804423 hsa-miR-4709-3p 1 1 0
chr3:49804271|49804423 hsa-miR-7154-3p 1 0 0
chr3:49804271|49804423 hsa-miR-6741-5p 1 0 0
chr3:49804271|49804423 hsa-miR-197-5p 1 0 0
chr3:49804271|49804423 hsa-miR-7845-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3151-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3180-3p 1 0 0
chr3:49804271|49804423 hsa-miR-6796-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6732-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6805-5p 1 0 0
chr3:49804271|49804423 hsa-miR-23a-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6798-5p 1 0 0
chr3:49804271|49804423 hsa-miR-1224-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6760-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6881-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6782-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3150b-3p 1 0 0
chr3:49804271|49804423 hsa-miR-5008-5p 0 1 0
chr3:49804271|49804423 hsa-miR-6835-5p 1 0 0
chr3:49804271|49804423 hsa-miR-5088-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3691-5p 1 0 0
chr3:49804271|49804423 hsa-miR-877-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6847-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6824-5p 1 0 0
chr3:49804271|49804423 hsa-miR-7156-3p 0 1 0
chr3:49804271|49804423 hsa-miR-5010-5p 1 0 0
chr3:49804271|49804423 hsa-miR-423-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3158-3p 1 0 0
chr3:49804271|49804423 hsa-miR-532-5p 0 1 0
chr3:49804271|49804423 hsa-miR-668-5p 1 0 0
chr3:49804271|49804423 hsa-miR-4524b-3p 0 1 0
chr3:49804271|49804423 hsa-miR-1207-5p 1 0 0
chr3:49804271|49804423 hsa-miR-1233-5p 1 0 0
chr3:49804271|49804423 hsa-miR-1273h-5p 0 1 0
chr3:49804271|49804423 hsa-miR-4763-3p 1 0 0
chr3:49804271|49804423 hsa-miR-6778-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6787-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6870-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3180 1 0 0
chr3:49804271|49804423 hsa-miR-6743-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6754-5p 0 1 0
chr3:49804271|49804423 hsa-miR-6756-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6803-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6851-5p 1 0 0
chr3:49804271|49804423 hsa-miR-10401-5p 1 0 0
chr3:49804271|49804423 hsa-miR-11181-3p 1 1 0
chr3:49804271|49804423 hsa-miR-1249-5p 1 1 0
chr3:49804271|49804423 hsa-miR-6751-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6779-5p 0 1 0
chr3:49804271|49804423 hsa-miR-6797-5p 1 0 0
chr3:49804271|49804423 hsa-miR-7111-5p 1 1 0
chr3:49804271|49804423 hsa-miR-4728-5p 1 0 0
chr3:49804271|49804423 hsa-miR-5196-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6780b-5p 1 0 0
chr3:49804271|49804423 hsa-miR-1237-5p 1 0 0
chr3:49804271|49804423 hsa-miR-4649-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6729-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6738-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6777-5p 0 1 0
chr3:49804271|49804423 hsa-miR-6794-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6858-5p 1 0 0
chr3:49804271|49804423 hsa-miR-4723-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6831-5p 1 1 0
chr3:49804271|49804423 hsa-miR-3085-5p 1 0 0
chr3:49804271|49804423 hsa-miR-30c-1-3p 0 1 0
chr3:49804271|49804423 hsa-miR-6731-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6856-5p 1 0 0
chr3:49804271|49804423 hsa-miR-4665-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6736-5p 1 0 0
chr3:49804271|49804423 hsa-miR-3173-3p 1 0 0
chr3:49804271|49804423 hsa-miR-4646-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6876-5p 1 0 0
chr3:49804271|49804423 hsa-miR-6891-5p 0 1 0
chr3:49804271|49804423 hsa-miR-378a-3p 0 1 0
chr3:49804271|49804423 hsa-miR-4716-3p 1 0 0
chr3:49804271|49804423 hsa-miR-378d 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

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    by mir_boxplot.py

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:49804271|49804423
ORF Type ORF1
Protein Length 30
Nucleotide Length 93
Protein Sequence MLPGASQGCIPVFCHHCFLLLLFLLLHTAD
Nucleotide Sequence ATGCTCCCTGGGGCCTCCCAAGGCTGCATCCCTGTCTTCTGTCACCACTGCTTCCTCCTCCTCCTCTTCCTCCTCCTCCACACAGCAGACTGA
CircID chr3:49804271|49804423
ORF Type ORF2
Protein Length 38
Nucleotide Length 114
Protein Sequence MGPPKAASLSSVTTASSSSSSSSSTQQTESSSKAPEAL
Nucleotide Sequence CTGGGGCCTCCCAAGGCTGCATCCCTGTCTTCTGTCACCACTGCTTCCTCCTCCTCCTCTTCCTCCTCCTCCACACAGCAGACTGAGTCCTCTTCCAAGGCACCCGAGGCCCTA
CircID chr3:49804271|49804423
ORF Type ORF3
Protein Length 32
Nucleotide Length 99
Protein Sequence MHPCLLSPLLPPPPLPPPPHSRLSPLPRHPRP
Nucleotide Sequence CTGCATCCCTGTCTTCTGTCACCACTGCTTCCTCCTCCTCCTCTTCCTCCTCCTCCACACAGCAGACTGAGTCCTCTTCCAAGGCACCCGAGGCCCTAA
CircID chr3:49804271|49804423
ORF Type ORF4
Protein Length 45
Nucleotide Length 135
Protein Sequence MEEDSVCCVEEEEEEEEEAVVTEDRDAALGGPREHALDWDSGFSE
Nucleotide Sequence TTGGAAGAGGACTCAGTCTGCTGTGTGGAGGAGGAGGAAGAGGAGGAGGAGGAAGCAGTGGTGACAGAAGACAGGGATGCAGCCTTGGGAGGCCCCAGGGAGCATGCCCTGGACTGGGACTCTGGCTTCTCGGAG
CircID chr3:49804271|49804423
ORF Type ORF5
Protein Length 39
Nucleotide Length 117
Protein Sequence MLCGGGGRGGGGSSGDRRQGCSLGRPQGACPGLGLWLLG
Nucleotide Sequence CTGCTGTGTGGAGGAGGAGGAAGAGGAGGAGGAGGAAGCAGTGGTGACAGAAGACAGGGATGCAGCCTTGGGAGGCCCCAGGGAGCATGCCCTGGACTGGGACTCTGGCTTCTCGGA
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab