CircRNA Information

General Information
circRNA Basic Information
CircID chr3:4984249|4984431
Strand +
CircType exon
Host Gene ENSG00000134107.4;
Algorism CIRI2;
Sequence TCCTCCCTCCCTCCGGGGCAGCTCAGCTTGTACAAGGGGCCCATTTTCAGTTCCTTAGTAAGCTAATCACTACGAAAGCCTGAGTAGGGAACTACATTCTCTTTATTCTTCCGAGGCAGGGGTGGGGAGCAGACCTGCGGAAACCTCCCCAAACCACTACCGTGCTATGCCAGTGCCTGCTAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:4984249|4984431 hsa-miR-21-5p 0 0 1
chr3:4984249|4984431 hsa-miR-21-3p 0 0 1
chr3:4984249|4984431 hsa-miR-22-5p 0 0 1
chr3:4984249|4984431 hsa-miR-22-3p 0 0 1
chr3:4984249|4984431 hsa-miR-484 0 0 1
chr3:4984249|4984431 hsa-miR-510-5p 0 0 1
chr3:4984249|4984431 hsa-miR-510-3p 0 0 1
chr3:4984249|4984431 hsa-miR-558 0 0 1
chr3:4984249|4984431 hsa-miR-583 0 0 1
chr3:4984249|4984431 hsa-miR-939-5p 0 0 1
chr3:4984249|4984431 hsa-miR-939-3p 0 0 1
chr3:4984249|4984431 hsa-miR-1276 0 0 1
chr3:4984249|4984431 hsa-miR-1321 0 0 1
chr3:4984249|4984431 hsa-miR-140-5p 0 0 1
chr3:4984249|4984431 hsa-miR-512-5p 0 0 1
chr3:4984249|4984431 hsa-miR-296-5p 0 0 1
chr3:4984249|4984431 hsa-miR-767-3p 0 0 1
chr3:4984249|4984431 hsa-miR-324-3p 0 0 1
chr3:4984249|4984431 hsa-miR-590-5p 0 0 1
chr3:4984249|4984431 hsa-miR-1245 0 0 1
chr3:4984249|4984431 hsa-miR-1260a 0 1 0
chr3:4984249|4984431 hsa-miR-4269 0 1 0
chr3:4984249|4984431 hsa-miR-4476 1 0 0
chr3:4984249|4984431 hsa-miR-4663 0 1 0
chr3:4984249|4984431 hsa-miR-4739 0 1 0
chr3:4984249|4984431 hsa-miR-4748 1 1 0
chr3:4984249|4984431 hsa-miR-6133 0 1 0
chr3:4984249|4984431 hsa-miR-8052 1 0 0
chr3:4984249|4984431 hsa-miR-12120 1 1 0
chr3:4984249|4984431 hsa-miR-3150a-3p 0 1 0
chr3:4984249|4984431 hsa-miR-6825-5p 0 1 0
chr3:4984249|4984431 hsa-miR-6799-5p 0 1 0
chr3:4984249|4984431 hsa-miR-1225-3p 1 0 0
chr3:4984249|4984431 hsa-miR-4695-5p 1 0 0
chr3:4984249|4984431 hsa-miR-6806-5p 1 0 0
chr3:4984249|4984431 hsa-miR-874-3p 0 1 0
chr3:4984249|4984431 hsa-miR-1915-5p 1 0 0
chr3:4984249|4984431 hsa-miR-615-5p 1 0 0
chr3:4984249|4984431 hsa-miR-3925-5p 1 0 0
chr3:4984249|4984431 hsa-miR-450a-2-3p 0 1 0
chr3:4984249|4984431 hsa-miR-7106-3p 0 1 0
chr3:4984249|4984431 hsa-miR-6828-3p 0 1 0
chr3:4984249|4984431 hsa-miR-214-3p 0 1 0
chr3:4984249|4984431 hsa-miR-3124-5p 1 0 0
chr3:4984249|4984431 hsa-miR-1207-5p 1 0 0
chr3:4984249|4984431 hsa-miR-1249-5p 0 1 0
chr3:4984249|4984431 hsa-miR-6797-5p 0 1 0
chr3:4984249|4984431 hsa-miR-10398-3p 0 1 0
chr3:4984249|4984431 hsa-miR-6750-5p 1 0 0
chr3:4984249|4984431 hsa-miR-6724-5p 1 0 0
chr3:4984249|4984431 hsa-miR-6753-3p 0 1 0
chr3:4984249|4984431 hsa-miR-7107-3p 0 1 0
chr3:4984249|4984431 hsa-miR-10400-3p 1 0 0
chr3:4984249|4984431 hsa-miR-6775-3p 1 0 0
chr3:4984249|4984431 hsa-miR-3619-5p 1 0 0
chr3:4984249|4984431 hsa-miR-6503-5p 0 1 0
chr3:4984249|4984431 hsa-miR-10522-5p 1 0 0
chr3:4984249|4984431 hsa-miR-4720-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py


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circRNA Open Reading Frame (ORF)
CircID chr3:4984249|4984431
ORF Type ORF1
Protein Length 34
Nucleotide Length 102
Protein Sequence MSRELHSLYSSEAGVGSRPAETSPNHYRAMPVPA
Nucleotide Sequence CTGAGTAGGGAACTACATTCTCTTTATTCTTCCGAGGCAGGGGTGGGGAGCAGACCTGCGGAAACCTCCCCAAACCACTACCGTGCTATGCCAGTGCCTGCT

CircID chr3:4984249|4984431
ORF Type ORF2
Protein Length 29
Nucleotide Length 90
Protein Sequence MGRFPQVCSPPLPRKNKENVVPYSGFRSD
Nucleotide Sequence TTGGGGAGGTTTCCGCAGGTCTGCTCCCCACCCCTGCCTCGGAAGAATAAAGAGAATGTAGTTCCCTACTCAGGCTTTCGTAGTGATTAG

RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites