CircRNA Information

General Information
circRNA Basic Information
CircID chr3:50102606|50102738
Strand +
CircType exon
Host Gene ENSG00000003756.15;
Algorism CIRI2;
Sequence AATTCTCTCAGTTCTGAGACTGTCTCTTACTTTTGCCCTTAGCATGGTGTCCTTGGGCTTCGCTTCACCTTTTTCCCCAGTCCCCCATCCTTATGCAAAGTAAAAGCCTTTACATTTCTCCTTCCCCCCACAC
circRNA Expression in different cancers

by boxplot.py
circRNA-miRNA-gene regulatory network
Target miRNAs
CircID miRNA PITA miRanda targetScan
chr3:50102606|50102738 hsa-miR-448 0 0 1
chr3:50102606|50102738 hsa-miR-539-5p 0 0 1
chr3:50102606|50102738 hsa-miR-539-3p 0 0 1
chr3:50102606|50102738 hsa-miR-559 0 0 1
chr3:50102606|50102738 hsa-miR-625-5p 0 0 1
chr3:50102606|50102738 hsa-miR-625-3p 0 0 1
chr3:50102606|50102738 hsa-miR-548j-5p 0 0 1
chr3:50102606|50102738 hsa-miR-548j-3p 0 0 1
chr3:50102606|50102738 hsa-miR-548n 0 0 1
chr3:50102606|50102738 hsa-miR-1275 1 1 1
chr3:50102606|50102738 hsa-miR-1197 0 0 1
chr3:50102606|50102738 hsa-miR-491-5p 0 0 1
chr3:50102606|50102738 hsa-miR-548b-5p 0 0 1
chr3:50102606|50102738 hsa-miR-548d-5p 0 0 1
chr3:50102606|50102738 hsa-miR-548c-5p 0 0 1
chr3:50102606|50102738 hsa-miR-548a-5p 0 0 1
chr3:50102606|50102738 hsa-miR-548i 0 0 1
chr3:50102606|50102738 hsa-miR-153 0 0 1
chr3:50102606|50102738 hsa-miR-548h 0 0 1
chr3:50102606|50102738 hsa-miR-184 1 0 0
chr3:50102606|50102738 hsa-miR-637 1 0 0
chr3:50102606|50102738 hsa-miR-762 1 0 0
chr3:50102606|50102738 hsa-miR-765 1 0 0
chr3:50102606|50102738 hsa-miR-3153 1 0 0
chr3:50102606|50102738 hsa-miR-1193 1 0 0
chr3:50102606|50102738 hsa-miR-3188 1 0 0
chr3:50102606|50102738 hsa-miR-4271 1 1 0
chr3:50102606|50102738 hsa-miR-4450 1 1 0
chr3:50102606|50102738 hsa-miR-4463 1 0 0
chr3:50102606|50102738 hsa-miR-4495 0 1 0
chr3:50102606|50102738 hsa-miR-4498 1 0 0
chr3:50102606|50102738 hsa-miR-2392 1 1 0
chr3:50102606|50102738 hsa-miR-4510 1 0 0
chr3:50102606|50102738 hsa-miR-4525 1 0 0
chr3:50102606|50102738 hsa-miR-4533 1 0 0
chr3:50102606|50102738 hsa-miR-4651 1 0 0
chr3:50102606|50102738 hsa-miR-4656 1 0 0
chr3:50102606|50102738 hsa-miR-4689 1 0 0
chr3:50102606|50102738 hsa-miR-4706 1 0 0
chr3:50102606|50102738 hsa-miR-4739 1 0 0
chr3:50102606|50102738 hsa-miR-4784 1 0 0
chr3:50102606|50102738 hsa-miR-5698 1 0 0
chr3:50102606|50102738 hsa-miR-5787 1 0 0
chr3:50102606|50102738 hsa-miR-6085 1 0 0
chr3:50102606|50102738 hsa-miR-6090 1 0 0
chr3:50102606|50102738 hsa-miR-6127 1 0 0
chr3:50102606|50102738 hsa-miR-6133 1 0 0
chr3:50102606|50102738 hsa-miR-6745 1 0 0
chr3:50102606|50102738 hsa-miR-8052 1 0 0
chr3:50102606|50102738 hsa-miR-8080 0 1 0
chr3:50102606|50102738 hsa-miR-8085 1 0 0
chr3:50102606|50102738 hsa-miR-8089 1 1 0
chr3:50102606|50102738 hsa-miR-6734-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6765-5p 1 1 0
chr3:50102606|50102738 hsa-miR-7106-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6825-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6894-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6857-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6799-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6728-5p 1 0 0
chr3:50102606|50102738 hsa-miR-8071 1 0 0
chr3:50102606|50102738 hsa-miR-5187-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6757-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6746-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6716-5p 1 0 0
chr3:50102606|50102738 hsa-miR-3151-5p 1 0 0
chr3:50102606|50102738 hsa-miR-3180-3p 1 0 0
chr3:50102606|50102738 hsa-miR-6748-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6796-5p 1 1 0
chr3:50102606|50102738 hsa-miR-6798-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6760-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6881-5p 1 0 0
chr3:50102606|50102738 hsa-miR-3150b-3p 1 0 0
chr3:50102606|50102738 hsa-miR-7109-5p 1 1 0
chr3:50102606|50102738 hsa-miR-3202 1 0 0
chr3:50102606|50102738 hsa-miR-6834-5p 1 0 0
chr3:50102606|50102738 hsa-miR-149-3p 1 0 0
chr3:50102606|50102738 hsa-miR-6800-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6878-5p 1 1 0
chr3:50102606|50102738 hsa-miR-5010-5p 1 0 0
chr3:50102606|50102738 hsa-miR-3191-3p 1 0 0
chr3:50102606|50102738 hsa-miR-4652-5p 0 1 0
chr3:50102606|50102738 hsa-miR-6814-5p 0 1 0
chr3:50102606|50102738 hsa-miR-4524a-3p 0 1 0
chr3:50102606|50102738 hsa-miR-3680-3p 0 1 0
chr3:50102606|50102738 hsa-miR-1207-5p 1 0 0
chr3:50102606|50102738 hsa-miR-1233-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4763-3p 1 0 0
chr3:50102606|50102738 hsa-miR-6769b-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6778-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6812-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6870-5p 1 0 0
chr3:50102606|50102738 hsa-miR-1343-5p 1 0 0
chr3:50102606|50102738 hsa-miR-5001-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6726-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6756-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6803-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6813-5p 1 0 0
chr3:50102606|50102738 hsa-miR-11181-3p 1 0 0
chr3:50102606|50102738 hsa-miR-1249-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6751-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6779-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6780a-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6797-5p 1 0 0
chr3:50102606|50102738 hsa-miR-7111-5p 1 0 0
chr3:50102606|50102738 hsa-miR-3620-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4728-5p 1 0 0
chr3:50102606|50102738 hsa-miR-5196-5p 1 1 0
chr3:50102606|50102738 hsa-miR-6780b-5p 1 0 0
chr3:50102606|50102738 hsa-miR-1237-5p 1 0 0
chr3:50102606|50102738 hsa-miR-328-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4649-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4725-3p 1 1 0
chr3:50102606|50102738 hsa-miR-4745-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6729-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6735-5p 0 1 0
chr3:50102606|50102738 hsa-miR-6794-5p 1 1 0
chr3:50102606|50102738 hsa-miR-6795-5p 1 1 0
chr3:50102606|50102738 hsa-miR-6846-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6848-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6858-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6883-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6887-5p 1 1 0
chr3:50102606|50102738 hsa-miR-4723-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6885-5p 1 0 0
chr3:50102606|50102738 hsa-miR-939-5p 1 0 0
chr3:50102606|50102738 hsa-miR-3199 0 1 0
chr3:50102606|50102738 hsa-miR-34b-5p 0 1 0
chr3:50102606|50102738 hsa-miR-365b-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4665-5p 1 1 0
chr3:50102606|50102738 hsa-miR-4700-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4747-5p 1 1 0
chr3:50102606|50102738 hsa-miR-6876-5p 1 0 0
chr3:50102606|50102738 hsa-miR-6891-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4472 1 0 0
chr3:50102606|50102738 hsa-miR-4716-3p 1 1 0
chr3:50102606|50102738 hsa-miR-6785-5p 1 0 0
chr3:50102606|50102738 hsa-miR-4667-5p 1 1 0
chr3:50102606|50102738 hsa-miR-548aj-5p 0 1 0
chr3:50102606|50102738 hsa-miR-548g-5p 0 1 0
chr3:50102606|50102738 hsa-miR-548x-5p 0 1 0
chr3:50102606|50102738 hsa-miR-548f-5p 0 1 0
Target Genes
       

Note about Function Analysis:
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Target miRNA Expression in different cancers

    by mir_boxplot.py

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circRNA Open Reading Frame (ORF)
CircID chr3:50102606|50102738
ORF Type ORF1
Protein Length 29
Nucleotide Length 90
Protein Sequence MRLSLTFALSMVSLGFASPFSPVPHPYAK
Nucleotide Sequence CTGAGACTGTCTCTTACTTTTGCCCTTAGCATGGTGTCCTTGGGCTTCGCTTCACCTTTTTCCCCAGTCCCCCATCCTTATGCAAAGTAA
CircID chr3:50102606|50102738
ORF Type ORF2
Protein Length 33
Nucleotide Length 99
Protein Sequence MPLAWCPWASLHLFPQSPILMQSKSLYISPSPH
Nucleotide Sequence TTGCCCTTAGCATGGTGTCCTTGGGCTTCGCTTCACCTTTTTCCCCAGTCCCCCATCCTTATGCAAAGTAAAAGCCTTTACATTTCTCCTTCCCCCCAC
RNA Binding Protein (RBP) of circRNA
CircID RBP Number of Upstream Sites Number of Downstream Sites Number of Circ Exons Sites
© 2021 Arieh Warshel Institute of Computational Biology, CUHK(SZ) | Designed by : Biomics Lab